Tan0003270 (gene) Snake gourd v1

Overview


Name	Tan0003270
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG08: 37048730 .. 37050635 (-)
RNA-Seq Expression	Tan0003270
Synteny	Tan0003270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATTCCATGGCACGTCGCCTTTTGGATCACCGATATGGTTTGGGTAGCCTTGAGCGGTTGTATTTCTTCTTGCTTGGCCATCGCCGACGAGATCGCCGACTCCATCAGAACTGGCGATATTGGCCCTTTTCATATTGGCTGATCGGAGATTCTTCTATTCATCATTTCATAACGAGCTCTGGTTTGTATTGTGACTTGAATTCTTCTGATTGCTAATCAAAAGCTTTATCACAATCTTCCGGATTATACCTCGTTTTCCTTTTCTTCATCCTTACAATTCTATAAACTTCTTTTTTTTCGGTCAAAAGAATGTATATTGATTGGATATGGACCAAACCTTTCATTCCTTCTTTAATTTTGGTTCGGTTAAATAGCCAAATCATGATCCTTGTTTTTCCCCTGCCCTTCCCTTCGTACAAATCAATCCTACTTTTTCTTTCCTCATATTTGGGTTCCCGCGAGTTTGAGTCTTCTGCCTTTTCTCCTTCTACTGTAAATCCTCAAGCTCCTTCAGTTTTTCCTTTTGCCTCGCGTGGTCTTGTTCACCATCCAATGCTTCCTTCCACCCCTTATTTTCTCCGACCTTACCTTTAAATTCATTTCCATTCAAATCATAACAATTCTAGCCCATCACCTTCATTTCACCTTCACAACCCATTATCATCCAAATCCCATCTCTGTGCTTACCACAATGGATTGAATATTGATTGGCATGTTAATTATATATCAATATCTGATATTTCCTACTGCTTTATAAAAAGTGAAAGTTATCTTAAAAGAATGTATGTTTGGGATCTCTGTAAGTAGGAGTCAGTCAAGATATTCTTTAGTCTTATGAAATTCCAATTGTCAAACATATCAAAGGACACTGTCAATTGTGAAAAAAAAAAAGATTGTTGATTCTGATTTGTTTGTATAGATCTGTTAAGAATAGTACTTGGGAAGTTAGTAGATAAATATTAGGGATACTATTAGGATTTTTTTGATAGGAAGGGATATTATTTGGATATTTGAAGAGCCTATTTTTCATTATTAACAATAAGTTAGGTAAGAGAGGTTCAAAATAAGGTGAGTTAGAGGGTTTGCGGAATTGCTAAAATTGGAGGGTAGTTTTTCTGGGAGAATCCAAGCCGCTTGAAGTTCGTGGGGTTGGGCATGGTAATTTTTACTTTTATATCTTGTAATATAATTCCAATGTTATTTTTATTATCAAGAACTTATCTTCTTAATTAGTGAAGCTTTGAAAGTGCAAATTTACATGTAAGTTGAAGCTTATTAGTCTCATATCAAGAGCTCAATATGAGCATAACTCAATTGATTACAACATGTACCTTCGACTAAATAGTTAGAAGCTTCAATCCCTCTTCCCCAAATGTTGTTGAACTCAAAATAACTAGTCTATGTTATGGGTGGAGTTTTTAACCAGATGGGTGGAGTTTTTAACCAATTATGTGACACCAATTGGTAAGGCCATGTATGTAGATTGCGTTACACATGCTCCAAAAGCATGATGATGATCATAGCTTAGAGCAAGGTTGAACGAGGATACCTGTAAAGCTACAAGTTCAAGGTAGGATGGATGAACAGTTGAGCACATAAACCTAACTAGGTAAGTGAGAGTACATCTTGGTCTTGCAACCTACAAGCCAGGCAAAGAGATCAGTGAAACATCCTGTGGCTTGGCTACGTGTTCAGACAATCTTGAGGTTGAATCGCCAGGGGTTATTCATCTCCAACTCCAACTATCTCGAATATATGACACACATCTCGAAAGGTTAGGTCATTGTTCTGGGAAAAATGGGCGTGAGAGAGTTCATTCTCGCGTGACGCGATGCGATCTCCATGTCCAGGAAAAGGAGTCGATGAAACTTTCCGGAGATAGTGGCTGGCTTGGTGCTTAG

mRNA sequence

ATGGCTATTCCATGGCACGTCGCCTTTTGGATCACCGATATGGTTTGGGTAGCCTTGAGCGGTTGTATTTCTTCTTGCTTGGCCATCGCCGACGAGATCGCCGACTCCATCAGAACTGGCGATATTGGCCCTTTTCATATTGATAGTGGCTGGCTTGGTGCTTAG

Coding sequence (CDS)

ATGGCTATTCCATGGCACGTCGCCTTTTGGATCACCGATATGGTTTGGGTAGCCTTGAGCGGTTGTATTTCTTCTTGCTTGGCCATCGCCGACGAGATCGCCGACTCCATCAGAACTGGCGATATTGGCCCTTTTCATATTGATAGTGGCTGGCTTGGTGCTTAG

Protein sequence

MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHIDSGWLGA

Homology

[Close]

BLAST of Tan0003270 vs. NCBI nr
Match: XP_022935086.1 (uncharacterized protein LOC111442062 [Cucurbita moschata] >XP_022935088.1 uncharacterized protein LOC111442062 [Cucurbita moschata] >XP_022935089.1 uncharacterized protein LOC111442062 [Cucurbita moschata] >XP_022983889.1 uncharacterized protein LOC111482369 [Cucurbita maxima] >XP_022983890.1 uncharacterized protein LOC111482369 [Cucurbita maxima] >XP_022983891.1 uncharacterized protein LOC111482369 [Cucurbita maxima] >XP_023527854.1 uncharacterized protein LOC111790952 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+ WH+AFWI +MVWVALS C+SSCLAIADE+A SIRTGDIGPFHI
Sbjct: 1  MAMTWHMAFWIANMVWVALSDCVSSCLAIADEVAGSIRTGDIGPFHI 47

[Close]

BLAST of Tan0003270 vs. NCBI nr
Match: XP_022158544.1 (uncharacterized protein LOC111025007 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 9.0e-14
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+PWH+AFW+ +MVW+ALSG ISSCLA ADE+A SIRTGDIGPFHI
Sbjct: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHI 47

[Close]

BLAST of Tan0003270 vs. NCBI nr
Match: XP_011655752.1 (uncharacterized protein LOC105435581 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+P H+AFWI DMVW A SGCISSCLA ADE+A SIRTGDIG FHI
Sbjct: 1  MALPLHLAFWIADMVWGAFSGCISSCLAFADEVASSIRTGDIGTFHI 47

[Close]

BLAST of Tan0003270 vs. NCBI nr
Match: XP_038903622.1 (uncharacterized protein LOC120090170 [Benincasa hispida] >XP_038903623.1 uncharacterized protein LOC120090170 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          M +P H+AFWI DMVWVA SGCI+SCLA+ADE+A SIRTGDIG FHI
Sbjct: 1  MPLPLHLAFWIADMVWVAFSGCITSCLALADEVAGSIRTGDIGAFHI 47

[Close]

BLAST of Tan0003270 vs. NCBI nr
Match: XP_008443282.1 (PREDICTED: uncharacterized protein LOC103486902 [Cucumis melo] >XP_008443283.1 PREDICTED: uncharacterized protein LOC103486902 [Cucumis melo] >XP_016899717.1 PREDICTED: uncharacterized protein LOC103486902 [Cucumis melo] >XP_016899718.1 PREDICTED: uncharacterized protein LOC103486902 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+P H+AFWI DMVW A SGCISSCLA ADE+A SIRTGDIG FHI
Sbjct: 1  MALPLHLAFWIADMVWGAFSGCISSCLAFADEVASSIRTGDIGAFHI 47

[Close]

BLAST of Tan0003270 vs. ExPASy TrEMBL
Match: A0A6J1J8T0 (uncharacterized protein LOC111482369 OS=Cucurbita maxima OX=3661 GN=LOC111482369 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+ WH+AFWI +MVWVALS C+SSCLAIADE+A SIRTGDIGPFHI
Sbjct: 1  MAMTWHMAFWIANMVWVALSDCVSSCLAIADEVAGSIRTGDIGPFHI 47

[Close]

BLAST of Tan0003270 vs. ExPASy TrEMBL
Match: A0A6J1F4E7 (uncharacterized protein LOC111442062 OS=Cucurbita moschata OX=3662 GN=LOC111442062 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+ WH+AFWI +MVWVALS C+SSCLAIADE+A SIRTGDIGPFHI
Sbjct: 1  MAMTWHMAFWIANMVWVALSDCVSSCLAIADEVAGSIRTGDIGPFHI 47

[Close]

BLAST of Tan0003270 vs. ExPASy TrEMBL
Match: A0A6J1DZQ4 (uncharacterized protein LOC111025007 OS=Momordica charantia OX=3673 GN=LOC111025007 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.4e-14
Identity = 37/47 (78.72%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+PWH+AFW+ +MVW+ALSG ISSCLA ADE+A SIRTGDIGPFHI
Sbjct: 1  MAMPWHMAFWMAEMVWIALSGWISSCLAFADEVAGSIRTGDIGPFHI 47

[Close]

BLAST of Tan0003270 vs. ExPASy TrEMBL
Match: A0A1S4DUQ1 (uncharacterized protein LOC103486902 OS=Cucumis melo OX=3656 GN=LOC103486902 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+P H+AFWI DMVW A SGCISSCLA ADE+A SIRTGDIG FHI
Sbjct: 1  MALPLHLAFWIADMVWGAFSGCISSCLAFADEVASSIRTGDIGAFHI 47

[Close]

BLAST of Tan0003270 vs. ExPASy TrEMBL
Match: A0A0A0LEY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822160 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 8.2e-13
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHIDSGWLG 54
          MA+P H+AFWI DMVW A SGCISSCLA A E+A SIRTGDIG FHI  GW G
Sbjct: 1  MALPLHLAFWIADMVWGAFSGCISSCLAFAHEVASSIRTGDIGAFHI--GWPG 51

[Close]

BLAST of Tan0003270 vs. TAIR 10
Match: AT3G57062.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-10
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+P  +A ++  MVW +LSG + +C+AIADEIA S+R GDIGPFH+
Sbjct: 1  MAMPLGMAMYLMRMVWFSLSGWVFTCVAIADEIAGSLRNGDIGPFHV 47

[Close]

BLAST of Tan0003270 vs. TAIR 10
Match: AT3G57062.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system. )

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-10
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 1  MAIPWHVAFWITDMVWVALSGCISSCLAIADEIADSIRTGDIGPFHI 48
          MA+P  +A ++  MVW +LSG + +C+AIADEIA S+R GDIGPFH+
Sbjct: 1  MAMPLGMAMYLMRMVWFSLSGWVFTCVAIADEIAGSLRNGDIGPFHV 47

The following BLAST results are available for this feature:

BLAST of Tan0003270 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022935086.1	5.3e-14	80.85	uncharacterized protein LOC111442062 [Cucurbita moschata] >XP_022935088.1 unchar...	[more]
XP_022158544.1	9.0e-14	78.72	uncharacterized protein LOC111025007 [Momordica charantia]	[more]
XP_011655752.1	1.7e-12	78.72	uncharacterized protein LOC105435581 [Cucumis sativus]	[more]
XP_038903622.1	1.7e-12	76.60	uncharacterized protein LOC120090170 [Benincasa hispida] >XP_038903623.1 unchara...	[more]
XP_008443282.1	1.7e-12	78.72	PREDICTED: uncharacterized protein LOC103486902 [Cucumis melo] >XP_008443283.1 P...	[more]

BLAST of Tan0003270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J8T0	2.6e-14	80.85	uncharacterized protein LOC111482369 OS=Cucurbita maxima OX=3661 GN=LOC111482369...	[more]
A0A6J1F4E7	2.6e-14	80.85	uncharacterized protein LOC111442062 OS=Cucurbita moschata OX=3662 GN=LOC1114420...	[more]
A0A6J1DZQ4	4.4e-14	78.72	uncharacterized protein LOC111025007 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A1S4DUQ1	8.2e-13	78.72	uncharacterized protein LOC103486902 OS=Cucumis melo OX=3656 GN=LOC103486902 PE=...	[more]
A0A0A0LEY0	8.2e-13	73.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822160 PE=4 SV=1	[more]

BLAST of Tan0003270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57062.1	2.9e-10	57.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G57062.2	2.9e-10	57.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48156	TRANSMEMBRANE PROTEIN	coord: 1..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003270.1	Tan0003270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane