Tan0003250 (gene) Snake gourd v1

Overview


Name	Tan0003250
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG09: 66899163 .. 66899504 (+)
RNA-Seq Expression	Tan0003250
Synteny	Tan0003250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAAAAGTACTCAATGAATGGATCAGCAATAATGAAGTTAGCAGTTGTATTCCTTGTTTGTGTAGCCATTTTAGCACCAATGGTGAAGGCCAACACAGAGGCGCCTAGTCCGACGGCAACAGATGGTTTCTCTTTGATGGGTTGCACTTCTTTTATTTCAGAGGCGGCAGAATGTGTGGCAGACGTGTTCAATAAAACAGTTGCTCCTCATCCTTCTTGTTGCAAAGCTATTTTGAAGCTCAATGATTGTTCTTCTGAGTTTCTCAAAAACATTCCTCCTACTGATATGGTTTTGATTAAGAAGATTTGTGCTTTGTGGGGTGTTTCAATCCCTTAA

mRNA sequence

ATGACGAAAAAGTACTCAATGAATGGATCAGCAATAATGAAGTTAGCAGTTGTATTCCTTGTTTGTGTAGCCATTTTAGCACCAATGGTGAAGGCCAACACAGAGGCGCCTAGTCCGACGGCAACAGATGGTTTCTCTTTGATGGGTTGCACTTCTTTTATTTCAGAGGCGGCAGAATGTGTGGCAGACGTGTTCAATAAAACAGTTGCTCCTCATCCTTCTTGTTGCAAAGCTATTTTGAAGCTCAATGATTGTTCTTCTGAGTTTCTCAAAAACATTCCTCCTACTGATATGGTTTTGATTAAGAAGATTTGTGCTTTGTGGGGTGTTTCAATCCCTTAA

Coding sequence (CDS)

ATGACGAAAAAGTACTCAATGAATGGATCAGCAATAATGAAGTTAGCAGTTGTATTCCTTGTTTGTGTAGCCATTTTAGCACCAATGGTGAAGGCCAACACAGAGGCGCCTAGTCCGACGGCAACAGATGGTTTCTCTTTGATGGGTTGCACTTCTTTTATTTCAGAGGCGGCAGAATGTGTGGCAGACGTGTTCAATAAAACAGTTGCTCCTCATCCTTCTTGTTGCAAAGCTATTTTGAAGCTCAATGATTGTTCTTCTGAGTTTCTCAAAAACATTCCTCCTACTGATATGGTTTTGATTAAGAAGATTTGTGCTTTGTGGGGTGTTTCAATCCCTTAA

Protein sequence

MTKKYSMNGSAIMKLAVVFLVCVAILAPMVKANTEAPSPTATDGFSLMGCTSFISEAAECVADVFNKTVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGVSIP

Homology

[Close]

BLAST of Tan0003250 vs. NCBI nr
Match: KAE8653021.1 (hypothetical protein Csa_004567 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-26
Identity = 67/103 (65.05%), Postives = 75/103 (72.82%), Query Frame = 0


Query: 11  AIMKLAVVFLVCVAILAPMVKANTEAPSPT---ATDGFSLMGCTSFISEAAECVADVFNK 70
           A MKL +VFLVC+AILA    A+T A +P      + FSL+GCTSFISEA  C+ DV   
Sbjct: 2   ASMKLPLVFLVCIAILAVSGMAHTGALAPADPFTAEEFSLLGCTSFISEATNCMVDVMKN 61

Query: 71  TVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGV 111
            VAPHPSCCKA  KLNDCSSEFLK IP  DM+LIK ICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSSEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0003250 vs. NCBI nr
Match: TYK10330.1 (hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 11  AIMKLAVVFLVCVAILAPMVKANTEAPSPT---ATDGFSLMGCTSFISEAAECVADVFNK 70
           A +KL +VF VC+AILA    A+T A +P+     +  SL+GCTSFISEA +CV DV   
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61

Query: 71  TVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGV 111
            VAPHPSCCKA  KLNDCS EFLK IP  DM+LIK ICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0003250 vs. NCBI nr
Match: KAA0050078.1 (hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 11  AIMKLAVVFLVCVAILAPMVKANTEAPSPT---ATDGFSLMGCTSFISEAAECVADVFNK 70
           A +KL +VF VC+AILA    A+T A +P+     +  SL+GCTSFISEA +CV DV   
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKN 61

Query: 71  TVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGV 111
            VAPHPSCCKA  KLNDCS EFLK IP  DM+LIK ICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0003250 vs. NCBI nr
Match: KAG6589812.1 (hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-24
Identity = 60/100 (60.00%), Postives = 71/100 (71.00%), Query Frame = 0


Query: 13  MKLAVVFLVCVAILAPMVKANTEAPSPTATDGFSLMGCTSFISEAAECVADVFNKTVAPH 72
           MKLA   LVC+AILA    +   AP P A +GFSL GCTS +SE  +CV DV  + VAPH
Sbjct: 1   MKLAAACLVCIAILA----SPAMAPDPFAAEGFSLFGCTSAVSEMTKCVVDVMKQAVAPH 60

Query: 73  PSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGVSI 113
           PSCC+AI KLN CSS FLK++P  DM LIK +CALWGV +
Sbjct: 61  PSCCRAISKLNRCSSVFLKDVPSADMFLIKTVCALWGVPV 96

[Close]

BLAST of Tan0003250 vs. NCBI nr
Match: TYK10345.1 (hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 7   MNGSAIMKLAVVFLVCVAILAPMVKAN---TEAPSPTATDGFSLMGCTSFISEAAECVAD 66
           M  SAI KL +V LVC+AILA  V A      A +PT+ D FSL  C SF+ +A +CV D
Sbjct: 1   MATSAITKLPLVLLVCIAILASSVTARPTIVAAATPTSED-FSLFPCISFVPKATKCVID 60

Query: 67  VFNKTVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGVSI 113
           V    VAPHPSCC+AI +L+DCSS+FLK+IP +DM+L+K ICA WGVSI
Sbjct: 61  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

[Close]

BLAST of Tan0003250 vs. ExPASy TrEMBL
Match: A0A5A7U483 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00620 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.2e-25
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 11  AIMKLAVVFLVCVAILAPMVKANTEAPSPT---ATDGFSLMGCTSFISEAAECVADVFNK 70
           A +KL +VF VC+AILA    A+T A +P+     +  SL+GCTSFISEA +CV DV   
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEKLSLLGCTSFISEATKCVIDVMKN 61

Query: 71  TVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGV 111
            VAPHPSCCKA  KLNDCS EFLK IP  DM+LIK ICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0003250 vs. ExPASy TrEMBL
Match: A0A5D3CG41 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00010 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.2e-25
Identity = 64/103 (62.14%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 11  AIMKLAVVFLVCVAILAPMVKANTEAPSPT---ATDGFSLMGCTSFISEAAECVADVFNK 70
           A +KL +VF VC+AILA    A+T A +P+     +  SL+GCTSFISEA +CV DV   
Sbjct: 2   ASIKLPLVFFVCMAILAVSGIAHTGAAAPSDPFTAEELSLLGCTSFISEATKCVIDVMKN 61

Query: 71  TVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGV 111
            VAPHPSCCKA  KLNDCS EFLK IP  DM+LIK ICALWGV
Sbjct: 62  AVAPHPSCCKAFSKLNDCSPEFLKGIPSADMILIKGICALWGV 104

[Close]

BLAST of Tan0003250 vs. ExPASy TrEMBL
Match: A0A5D3CFS6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold367G00210 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.7e-24
Identity = 63/109 (57.80%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 7   MNGSAIMKLAVVFLVCVAILAPMVKAN---TEAPSPTATDGFSLMGCTSFISEAAECVAD 66
           M  SAI KL +V LVC+AILA  V A      A +PT+ D FSL  C SF+ +A +CV D
Sbjct: 1   MATSAITKLPLVLLVCIAILASSVTARPTIVAAATPTSED-FSLFPCISFVPKATKCVID 60

Query: 67  VFNKTVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGVSI 113
           V    VAPHPSCC+AI +L+DCSS+FLK+IP +DM+L+K ICA WGVSI
Sbjct: 61  VLKNAVAPHPSCCEAISQLHDCSSQFLKDIPSSDMILVKSICASWGVSI 108

[Close]

BLAST of Tan0003250 vs. ExPASy TrEMBL
Match: A0A5A7U9B0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00630 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 62/109 (56.88%), Postives = 76/109 (69.72%), Query Frame = 0


Query: 7   MNGSAIMKLAVVFLVCVAILAPMVKA---NTEAPSPTATDGFSLMGCTSFISEAAECVAD 66
           M  SAI KL +V  VC+AILA  V A      A +PT+ D FSL  C SF+ +A +CV D
Sbjct: 1   MATSAITKLPLVLRVCIAILASSVTACPTIVAAATPTSED-FSLFPCISFVPKATKCVID 60

Query: 67  VFNKTVAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGVSI 113
           V    VAPHPSCC+AI +L+DCSS+FLK+IP  DM+L+K ICA WGVSI
Sbjct: 61  VLKNVVAPHPSCCEAITQLHDCSSQFLKDIPSGDMILVKSICASWGVSI 108

[Close]

BLAST of Tan0003250 vs. ExPASy TrEMBL
Match: A0A5A7U8Y3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00460 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.5e-21
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 10  SAIMKLAVVFLVCVAILAPMVKANTEAPSPTATDG-FSLMGCTSFISEAAECVADVFNKT 69
           ++  KL +  L C+ ILA  V A     +  A +G  SL  C SF+ +A ECV DV    
Sbjct: 3   ASFTKLPLALLFCIFILASSVMARPVTVAAAAPEGDISLFPCKSFVPKATECVIDVLKNA 62

Query: 70  VAPHPSCCKAILKLNDCSSEFLKNIPPTDMVLIKKICALWGVSI 113
           VAPHPSCC+AI +L+DCSS+FLK+IP  DM+L+K ICALWGVSI
Sbjct: 63  VAPHPSCCQAISELHDCSSQFLKDIPSVDMILVKSICALWGVSI 106

The following BLAST results are available for this feature:

BLAST of Tan0003250 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653021.1	1.1e-26	65.05	hypothetical protein Csa_004567 [Cucumis sativus]	[more]
TYK10330.1	1.1e-24	62.14	hypothetical protein E5676_scaffold367G00010 [Cucumis melo var. makuwa]	[more]
KAA0050078.1	1.1e-24	62.14	hypothetical protein E6C27_scaffold675G00620 [Cucumis melo var. makuwa]	[more]
KAG6589812.1	3.1e-24	60.00	hypothetical protein SDJN03_15235, partial [Cucurbita argyrosperma subsp. sorori...	[more]
TYK10345.1	1.2e-23	57.80	hypothetical protein E5676_scaffold367G00210 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U483	5.2e-25	62.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CG41	5.2e-25	62.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CFS6	5.7e-24	57.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9B0	1.1e-22	56.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U8Y3	3.5e-21	52.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Tan0003250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 48..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003250.1	Tan0003250.1	mRNA