Tan0003190 (gene) Snake gourd v1

Overview


Name	Tan0003190
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Protein no-on-transient A-like
Location	LG09: 67582814 .. 67583715 (-)
RNA-Seq Expression	Tan0003190
Synteny	Tan0003190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACCACCAAACGAAGCTTCGAAGAACCAAGAAAAAAAACTTTCGATTTTCCGGGAAAATGTTTGTGAAAGGAAAATCAAGAGGAAAATTCTGTCGATTTCAACAGTCAAAAAACGCGCCCAAATTAAAAACCATATCATCTTCATTCTTCATCAGTCTGATCTGAAACTATATAAATTTATGCGATTACAAACTATACCTCCATTCTCTGATTCTCTTCGCTCAACGACAGAAGCTCGAATTAGATTTGCCCTACACGAATGGCTTCAATTAATCGCTTCGTTCCGATAGCCCTAATAGCTCTTCTCTTGTTTTCTGAATCTCTCTCTGTTTCGTCTGCTGATCATGGCCAGGATTCGAGATCTTTCACCGGAATTATTCGCCGGAATATGCTTAATCGATCGGAGAATCGGCGGGCGGATAACGATACCGACTCCTCTTTGAATATCAGTATCAAAAGAGGAGCTCGGTCCGCCGTAATTGGAGGTCATTCCAGTAGATCGTCGTCGAGCCGAGTGCCGCCCGTTAATGTGGGATCTGTGATTTGTTTCTTCTTCGCTTTTGCGTTTGCTTTGTTGTTGTGAAAATTTGAAGTGAAGCAATTCATTTCTGTTGAATTTATTTGATTACTGTAAGGTAATTGGGAGATTGATTATACTCATAAATCAATAAACTAGATATTGTGATTTGAAATTTTAATATATACGATTTGAAAGAAAGAAATGAAGAGAAACTAAACACAATGTAGCCAACAACATAACTCAACTGAAATTAAATATAATTTATGATAAAGAATCCCCATTTTCATATATTAAAAAAAATACAATTTCAAAAAATTAAATAATTATCCAGTTTTAGATTTAAATTTTTTTAGGCAAAATTATAAGAAATGAGTCCGAC

mRNA sequence

AGAAACCACCAAACGAAGCTTCGAAGAACCAAGAAAAAAAACTTTCGATTTTCCGGGAAAATGTTTGTGAAAGGAAAATCAAGAGGAAAATTCTGTCGATTTCAACAGTCAAAAAACGCGCCCAAATTAAAAACCATATCATCTTCATTCTTCATCAGTCTGATCTGAAACTATATAAATTTATGCGATTACAAACTATACCTCCATTCTCTGATTCTCTTCGCTCAACGACAGAAGCTCGAATTAGATTTGCCCTACACGAATGGCTTCAATTAATCGCTTCGTTCCGATAGCCCTAATAGCTCTTCTCTTGTTTTCTGAATCTCTCTCTGTTTCGTCTGCTGATCATGGCCAGGATTCGAGATCTTTCACCGGAATTATTCGCCGGAATATGCTTAATCGATCGGAGAATCGGCGGGCGGATAACGATACCGACTCCTCTTTGAATATCAGTATCAAAAGAGGAGCTCGGTCCGCCGTAATTGGAGGTCATTCCAGTAGATCGTCGTCGAGCCGAGTGCCGCCCGTTAATGTGGGATCTGTGATTTGTTTCTTCTTCGCTTTTGCGTTTGCTTTGTTGTTGTGAAAATTTGAAGTGAAGCAATTCATTTCTGTTGAATTTATTTGATTACTGTAAGGTAATTGGGAGATTGATTATACTCATAAATCAATAAACTAGATATTGTGATTTGAAATTTTAATATATACGATTTGAAAGAAAGAAATGAAGAGAAACTAAACACAATGTAGCCAACAACATAACTCAACTGAAATTAAATATAATTTATGATAAAGAATCCCCATTTTCATATATTAAAAAAAATACAATTTCAAAAAATTAAATAATTATCCAGTTTTAGATTTAAATTTTTTTAGGCAAAATTATAAGAAATGAGTCCGAC

Coding sequence (CDS)

ATGGCTTCAATTAATCGCTTCGTTCCGATAGCCCTAATAGCTCTTCTCTTGTTTTCTGAATCTCTCTCTGTTTCGTCTGCTGATCATGGCCAGGATTCGAGATCTTTCACCGGAATTATTCGCCGGAATATGCTTAATCGATCGGAGAATCGGCGGGCGGATAACGATACCGACTCCTCTTTGAATATCAGTATCAAAAGAGGAGCTCGGTCCGCCGTAATTGGAGGTCATTCCAGTAGATCGTCGTCGAGCCGAGTGCCGCCCGTTAATGTGGGATCTGTGATTTGTTTCTTCTTCGCTTTTGCGTTTGCTTTGTTGTTGTGA

Protein sequence

MASINRFVPIALIALLLFSESLSVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDSSLNISIKRGARSAVIGGHSSRSSSSRVPPVNVGSVICFFFAFAFALLL

Homology

[Close]

BLAST of Tan0003190 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.1 bits (318), Expect = 9.1e-26
Identity = 75/108 (69.44%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MASINRFVPIALIALLLFSESLSVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDSS 60
           MA I R  PI LI LLL SES  VSSAD+ QD +S TGI+ RN+L+  E++R D DT SS
Sbjct: 1   MAPIKRLFPITLICLLLLSESFPVSSADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGSS 60

Query: 61  L--NISIKRGARSAVIGGHSSRSSSSRVPPVNVGSVICFFFAFAFALL 107
           L   ISIKRGARSAVIGGHSS SSSSRVPP N+ SVICF FAFAFALL
Sbjct: 61  LAEKISIKRGARSAVIGGHSSISSSSRVPPFNIASVICFVFAFAFALL 108

[Close]

BLAST of Tan0003190 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 1  MASINRFVPIALIALLLFSESLSVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDSS 60
          MA++   V +AL+ALLLFSESL+ S+ D   DS S TG++RRN+L  + ++ ADN  +SS
Sbjct: 1  MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60

Query: 61 ----LNISIKRGARSAVIGGHSSRSSSSRVPPVNVGSVI 96
              +N+ IKR  R    G  SS ++ SR+  + VGSV+
Sbjct: 61 PERKMNVHIKRRMRPVATGTRSSAANRSRIASIGVGSVL 99

[Close]

BLAST of Tan0003190 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.4e-10
Identity = 59/113 (52.21%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 2   ASINRF-VPIALIALLLFSESL-SVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDS 61
           A+I+RF +PIALI+LLLFSESL ++SS+DH QDS                NR  D D+ +
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDS----------------NRPGDKDSGT 62

Query: 62  SL--NISIKRGARSAVIGGHSSRSSSSRVPP---VNVGSVICFFFAFAFALLL 108
           SL   ISIKRG RS VI G S+ SSS+RV      NVGSVICF  AF  A+ L
Sbjct: 63  SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

[Close]

BLAST of Tan0003190 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 1   MASINRF-VPIALIALLLFSESL-SVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTD 60
           MA+I+RF +P+ALI+LLLFSESL ++SS DHGQ+S                NRR D  +D
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNS----------------NRRGDKGSD 60

Query: 61  SSL--NISIKRGARSAVIGGHSSRSSSSRVPP--VNVGSVICFFFAFAFALLL 108
           +SL   I  KRG RS V  G S+ SSS+++     NVGS+ICF  AF FA+ L
Sbjct: 61  TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

[Close]

BLAST of Tan0003190 vs. NCBI nr
Match: KAA0068047.1 (protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no-on-transient A-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-04
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 1   MASINRFVPIALIALLLFSESLSVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDSS 60
           MA+I   + I+L+ALL FSESLS S+AD    S S TG++RRN+L  + +  A  D++  
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIA--DSEGK 60

Query: 61  LNISIKRG---------ARSAVIGGHSSRSSSSRVPPVNVGSVICF 98
           +N+ IKRG         A +   G   S +S S+V    +G ++ F
Sbjct: 61  MNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFF 104

[Close]

BLAST of Tan0003190 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 59/113 (52.21%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 2   ASINRF-VPIALIALLLFSESL-SVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDS 61
           A+I+RF +PIALI+LLLFSESL ++SS+DH QDS                NR  D D+ +
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDS----------------NRPGDKDSGT 62

Query: 62  SL--NISIKRGARSAVIGGHSSRSSSSRVPP---VNVGSVICFFFAFAFALLL 108
           SL   ISIKRG RS VI G S+ SSS+RV      NVGSVICF  AF  A+ L
Sbjct: 63  SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

[Close]

BLAST of Tan0003190 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 55/113 (48.67%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 1   MASINRF-VPIALIALLLFSESL-SVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTD 60
           MA+I+RF +P+ALI+LLLFSESL ++SS DHGQ+S                NRR D  +D
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNS----------------NRRGDKGSD 60

Query: 61  SSL--NISIKRGARSAVIGGHSSRSSSSRVPP--VNVGSVICFFFAFAFALLL 108
           +SL   I  KRG RS V  G S+ SSS+++     NVGS+ICF  AF FA+ L
Sbjct: 61  TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

[Close]

BLAST of Tan0003190 vs. ExPASy TrEMBL
Match: A0A5A7VLE5 (Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00010 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 40/106 (37.74%), Postives = 60/106 (56.60%), Query Frame = 0


Query: 1   MASINRFVPIALIALLLFSESLSVSSADHGQDSRSFTGIIRRNMLNRSENRRADNDTDSS 60
           MA+I   + I+L+ALL FSESLS S+AD    S S TG++RRN+L  + +  A  D++  
Sbjct: 1   MAAIKSLLFISLLALLFFSESLSTSAADCRGASNSVTGMLRRNVLQTATHEIA--DSEGK 60

Query: 61  LNISIKRG---------ARSAVIGGHSSRSSSSRVPPVNVGSVICF 98
           +N+ IKRG         A +   G   S +S S+V    +G ++ F
Sbjct: 61  MNVHIKRGGGGRIRPVAAGTGFTGNRKSAASRSQVASFGLGFLLFF 104

The following BLAST results are available for this feature:

BLAST of Tan0003190 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587814.1	9.1e-26	69.44	hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575859.1	1.4e-10	44.44	hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN65176.1	2.4e-10	52.21	hypothetical protein Csa_019975 [Cucumis sativus]	[more]
KAA0035100.1	1.6e-09	48.67	hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597...	[more]
KAA0068047.1	4.4e-04	37.74	protein no-on-transient A-like [Cucumis melo var. makuwa] >TYK18081.1 protein no...	[more]

BLAST of Tan0003190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYV9	1.2e-10	52.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1	[more]
A0A5D3BCG4	7.6e-10	48.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VLE5	2.1e-04	37.74	Protein no-on-transient A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of Tan0003190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003190.1	Tan0003190.1	mRNA