Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCTCAATTATAGCCTTACTCAAAAGAAAACGTTTAACTGGCGAAAACTATACTACGTGGAAGTCCAACCTAAATACGATTCTTGTTGTTGACGACTTTCGGTTTGTACTAACTGAGGAATGTCCTCAGGTCCCTACTCGAAACGCTTTTCAACCTGTTAAGGATGCATACGACCGCTGGATCAAGGCCAATAATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAACATGTTTGGACAACCGTCTGGACAGCTTCGACACGAATCCCTCAAGTACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTCGATCTGATGGTCCACTTCAACGTGGCTGAAATGAATGGCGCGGTCATAGACGAGCAAAGTCAGGTGTCGTTCATCCTGGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAGGAATGCGATGATGAACAAGATAGAGTACAACCTGACTACTCTCCTTAATGAACTGCAGACTTTCCAGTCTCTTATGAAAAATTAG
mRNA sequence
ATGTCGTCCTCAATTATAGCCTTACTCAAAAGAAAACGTTTAACTGGCGAAAACTATACTACGTGGAAGTCCAACCTAAATACGATTCTTGTTGTTGACGACTTTCGGTTTGTACTAACTGAGGAATGTCCTCAGGTCCCTACTCGAAACGCTTTTCAACCTGTTAAGGATGCATACGACCGCTGGATCAAGGCCAATAATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAACATGTTTGGACAACCGTCTGGACAGCTTCGACACGAATCCCTCAAGTACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTCGATCTGATGGTCCACTTCAACGTGGCTGAAATGAATGGCGCGGTCATAGACGAGCAAAGTCAGGTGTCGTTCATCCTGGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAGGAATGCGATGATGAACAAGATAGAGTACAACCTGACTACTCTCCTTAATGAACTGCAGACTTTCCAGTCTCTTATGAAAAATTAG
Coding sequence (CDS)
ATGTCGTCCTCAATTATAGCCTTACTCAAAAGAAAACGTTTAACTGGCGAAAACTATACTACGTGGAAGTCCAACCTAAATACGATTCTTGTTGTTGACGACTTTCGGTTTGTACTAACTGAGGAATGTCCTCAGGTCCCTACTCGAAACGCTTTTCAACCTGTTAAGGATGCATACGACCGCTGGATCAAGGCCAATAATAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTGAAGTTCTGGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAACATGTTTGGACAACCGTCTGGACAGCTTCGACACGAATCCCTCAAGTACGTTTATAACTCCCGTATGAAGGAGGGGTCATCGGTGAGAGAACACGTTCTCGATCTGATGGTCCACTTCAACGTGGCTGAAATGAATGGCGCGGTCATAGACGAGCAAAGTCAGGTGTCGTTCATCCTGGAATCTCTTCCGAAGAGTTTTCTGCAATTCCGCAGGAATGCGATGATGAACAAGATAGAGTACAACCTGACTACTCTCCTTAATGAACTGCAGACTTTCCAGTCTCTTATGAAAAATTAG
Protein sequence
MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYDRWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNSRMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEYNLTTLLNELQTFQSLMKN
Homology
BLAST of Tan0003185 vs. NCBI nr
Match:
KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 285.0 bits (728), Expect = 4.8e-73
Identity = 138/197 (70.05%), Postives = 167/197 (84.77%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY WK+ +NT+L++DD RFVL EECPQVP NA Q V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYAAWKNTINTVLIIDDLRFVLVEECPQVPAANATQTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. NCBI nr
Match:
KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 283.9 bits (725), Expect = 1.1e-72
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. NCBI nr
Match:
TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 283.9 bits (725), Expect = 1.1e-72
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. NCBI nr
Match:
KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 283.9 bits (725), Expect = 1.1e-72
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. NCBI nr
Match:
KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])
HSP 1 Score: 283.9 bits (725), Expect = 1.1e-72
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. ExPASy TrEMBL
Match:
A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)
HSP 1 Score: 285.0 bits (728), Expect = 2.3e-73
Identity = 138/197 (70.05%), Postives = 167/197 (84.77%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY WK+ +NT+L++DD RFVL EECPQVP NA Q V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYAAWKNTINTVLIIDDLRFVLVEECPQVPAANATQTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. ExPASy TrEMBL
Match:
A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)
HSP 1 Score: 283.9 bits (725), Expect = 5.2e-73
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. ExPASy TrEMBL
Match:
A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)
HSP 1 Score: 283.9 bits (725), Expect = 5.2e-73
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. ExPASy TrEMBL
Match:
A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)
HSP 1 Score: 283.9 bits (725), Expect = 5.2e-73
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
BLAST of Tan0003185 vs. ExPASy TrEMBL
Match:
A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)
HSP 1 Score: 283.9 bits (725), Expect = 5.2e-73
Identity = 137/197 (69.54%), Postives = 168/197 (85.28%), Query Frame = 0
Query: 1 MSSSIIALLKRKRLTGENYTTWKSNLNTILVVDDFRFVLTEECPQVPTRNAFQPVKDAYD 60
M+S+ + +L +L G NY +WK+ +NT+L++DD RFVL EECPQVP NA + V++ Y+
Sbjct: 1 MTSATLNMLAADKLNGNNYASWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYE 60
Query: 61 RWIKANNKAKVYILASVSEVLAKKHEGMVSAREIMSSLQNMFGQPSGQLRHESLKYVYNS 120
RW KAN KA+ YILAS+SEVLAKKHE M++AREIM SLQ MFGQ S Q++H++LKY+YN+
Sbjct: 61 RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120
Query: 121 RMKEGSSVREHVLDLMVHFNVAEMNGAVIDEQSQVSFILESLPKSFLQFRRNAMMNKIEY 180
RM EG+SVREHVL++MVHFNVAEMNGAVIDE SQVSFILESLP+SFLQFR NA+MNKI Y
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAY 180
Query: 181 NLTTLLNELQTFQSLMK 198
LTTLLNELQTF+SLMK
Sbjct: 181 TLTTLLNELQTFESLMK 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V6N0 | 2.3e-73 | 70.05 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016... | [more] |
A0A5A7SMH8 | 5.2e-73 | 69.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025... | [more] |
A0A5D3CPJ6 | 5.2e-73 | 69.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004... | [more] |
A0A5A7TU93 | 5.2e-73 | 69.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259... | [more] |
A0A5A7TWB9 | 5.2e-73 | 69.54 | Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031... | [more] |
Match Name | E-value | Identity | Description | |