Tan0003157 (gene) Snake gourd v1

Overview


Name	Tan0003157
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	nuclear pore complex protein NUP54
Location	LG04: 513349 .. 518039 (+)
RNA-Seq Expression	Tan0003157
Synteny	Tan0003157

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAACAATTCCCAAATAACTCGCGGCAAAAGGGCTCAGTGCCCTAGACTCCCTCGTCCTCACTTAAACCTCAACTCTGAAAATCTGAGAGAGGCATTTCGTCGAGCACAACTTTCGACTCTCAAATGGCGCTTTCGATTTGAGACGTTAGGGTTTCTCTTTGACAGTCATTGCAAGTACAATGTTCGGAGCTCAACCGTCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCCTCGCCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTCGGAACTCCATCAACGTCGACTTTTGCCACTGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTCCACAACAGCAACAGCAGCAGCAGCAGTCGCCGTTGTTTCCGCAACCAGCCGCCACCGGATTCGGTTTCCAGACTCCGTTTGCAACGCCTCAGTCTAGTCCATTTCCAAATGCTCAATTGACCACTCAGATGGCGCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGTACGTTTCTGAAAGTTATCGGCAAGAACTAGCAATTTCTCCGTTCTCCTTCTGCATCCGCGCCTATTTATTTTGTTTTTATTGTCTGCATCAGGCAATTGTTGAGGCTTACAAGGACGACGCTGGAAACTCTAAGTATGCTTTCAAGGTTCGTCTCCCTGTTCTCGACTGGAAACCGGAATGCCTTGTGTTTTTACCGTCACTTACACTTGAAAGTTGATAATCGCGAGGAAGAATATGATAAACTTTCGTAGAAGTTCTAGGAAGTACTTCCTGTATCCATCATTTCCAGTTGCTACGAAGTTGATGCTTGTGTTTATTTTGCAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATGTGAGTTGAATACATTGTGTTTTTACGTCTGAAGAATTTTCATCTCTTTGTATGTCTTTTTTTTTTTGTCGGATTCTACACTAAGTACGGAGAATAGTTTGCATTGCCAGATAATGTGGGCTGAGGCTATGGCAAAGCTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGGTATTTCAATTTACTGCAAAATGTGTTGTGAAATTCTTTGATTATATTTTAAGATATTTATCTCAGCAAGTGAACTTTGTGTGTGGCCTCCATGTTTATGCATGTTTCATCATGTTCTATGAGTTCTAGCATATCGTTTGTTATAGCTTCAAAATTCTCCATCAGCGGTGGTGAATTTGCAGGCGTGTTCTTAAGCAATGTTAACCATATACTTATAAATTTTGGACTGCTTTTTTACATCATGGATCTGATTTGATACTTTGAGTTCATATAAGTGGCTGATCCAAAGTTTCGTTCGAGAGATTGTACTGATGAATACAAAATTATATGTTTAGTTCACCTGTTTCACTGCATTAAGAATTAGTCTTATTTCTAACTCAATTATTATATTAGTTGTATTCTATATTAATTTCAATTTTATTAAATTTTAAGTGAAGAAGCATTTGTCTATTTACACAATATTCTAATGATTAATAAATAAAAATTACACGTTTGAAATAAATATTTAGTTTGATGATTATAGTTTCCCTTAAAAAATTATGTAAATAACCTTTAACATAAATAATACTTATAAAATAAAATAAGAATAATCGTGTCAGGACTAACTGGATGGTTAAACTAGACTTAAAATCTTATAGTTTATTTAAATATACAATATTTCATTTTTTTAATTAAATTATACTTTCAGTTGTTATGGTGAAGAAAAATTAAATTCATGAAAACTATACACATTATAGAGTAAGAATTATTAGAAAATAAAATTCTATCAACAAGAAAGACTGTTGTAAATGTGCTTATAGTATATGTTTTTTCTCATAAATATTGGTAAACTTCAAAATGTCTCGTGGGCATTGCCTCCGTGCCTGGACTATATCCACCCCTTCTGAATGTTAATTATTGTGACAAATTCTATGCATGGCAAACAGTTAATTCTTTTTCACTTCCAAATAGTAATAATGCAGGATGTGCCAGCCTTTGGACGATATGTTATTGTTATTGACATTCAAAACTATGGGAAAACACAAGTTATGTATGATAGGATGCCAATTGTGTTTTATTAATGTTGGTGAAACAAATGCAATAACCTAATTATTGGCTTTATGTTTCCATTTAAGATTATTAATTAATATGTTTTGGATAAGTATGATATCTTTACGTTCAAGTTGTAGGGAGTATGTAAATTGAAAATATTCATGATGTATCAATATCGCATATGCTGAAAGTTATAATCTGCCAATTTTGCATGTGCTTCCAGCATTCCTTGCGAAAGTCTGTGATTCCAATTGTTCTTTGAAGTTGCCAAATAGTGAATCTGTTTTGTTTCTGTTGCTGTTTCTGAAAATATTTTTAACATCTAAAAATATCTTAAAAGGTTAAGGACATCAGCTCAGCTTTTGAACCTATTACTTTTTTGTGCATACTTCTCAACCCATCTTAAGCATATTCTCCTTTTTTCACACGTCCTTGTGTTTGCTGAATGAAGTAGCCTGGTTTGTTGCACTGACGCTCCAGTGGGGTTAATACAGATTCAAGATGAAGTCATTCTCTCTGATGCTGAGAGACTGCGGATGACCCAAAGCAATGTCAAAATGGTAATCTTATGCTTCCTTAACGATAAATCTTAAATTTCCTTTTTTAATTGATGCTTGCTTGATGCCAGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGGTCCAAAGATTGAAACAGAAGGAGCAAGGTCTGCAAAGGCGTCTGTTGAGAGTATGTATTATTTTTTCTAATCAGTGGGCTAATATGCAAAAAAAAAAGTGCTATGAATGTGATCTTCATTTTCCTTCCCTCCCGCCCCGCTAAAAAAAAGTTCATAATGCTATTGATGTCAAACTGCTTCTATATTAAATTTGACATTTTCTTCAATTAAAGGTTATGAGAATTGTGGAGGCCCTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGGGAGGCTGAATTGGCTGAGAAGTTAGCCTTGATATCGAGGCAGGTAGGTATCCTTCATCTCTTTTCCTTTAATTTCAAAAAGTGATACTGAAAAATCTCCACGCAGGGAGTTCGTAGGGCATTTCCATCTAGTTCAATCAAATCAACTTCATCCTAATAGTCGAACATGTAAATTATTTCAAGGCCTTTATTTTCTTTCTAAAGAACATCGCATAAAGATGATCTTTCACTCTTTTTTTTTCAATGTTTACTTTAATATGATATTATTGTCGTTTTACTTGTAACAAAATTTGAAAGATGTTACTGAAATGTTTGCAAGGCATGTGTCTACCATTATAATATAAATTTAAAATGAGTTTAGTTTCCATGTAGGAGGGTAAATTTTCCTTTTCTTTATCAAGTCGGCGGGGGAGCATAAACTTGAATTATAATTATAACTAGGGGAAAATATGTTACTTATCCCAAAAAGTTGCATCAAAATGATATTCTTGGGCACATTTCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAATTTGCTTACAACTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGCAATTCCATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTGCGAATATATTTATGTTTTGAGTCTGCTTTTTCCTTTGTAGTTTTTTCTGAAAATAAACATCATGAGGCCATTGCTAGACTTGGAAATGTTTTAAAGCGTAAATGATAATTCTAGTAAATGCAGCTATGTTATTGTCAAATTTATCAACCAACTTCATCTGCATTGTTGTGTGCCAGGTTTTGCAGCAGCAGACCGAGGCCATTGCTAGACTTGGAAATGTTTTAAAGCGTGATGTTAGAGACATGGAAATCATAATGGCCGAAGACAAAGAGATGACAGATGCTGCGAGTTAAAAGAAATTGAGTTCACATTTCTAGCCGTTTGTTTCGTTTTTGTTATAGATATACTTGGCTTGATTTTTCTAAAAGGAAAAATTAAAATCCGTTTTTAAAAAAATTTATATACTGCCCAATTAATTCGTCAAGTGCTGGCCGACATCTCTTATGAGAGACCTGCGTTAGTATTTCGTTAACATAGAGTCAATTTGAACTGCTTAATACCTATTCGATTTTGATTTGATGCAGTGTTAAAGTAATGGGGTCATATTCATAAGGCAACATGAACAGTTGCTATGTTGGTTGATTAACGTAGTCGGCATCAGCCAGCAGGGCATTTGATTCATCTTTTCCTTATCAGGTGAGGTGACTATCCATCCTACTCATGAGAAAACCCTTTAAAATCTTGGCATTTGGATGTTTATGCCTCTTTATTATAAAACCTTATGCTAGGAAGAGTAGTAGAGTGAAACTGGAGGGGTCATGCTAGAGAAACAAATGTTATATAGAAACGGAAAGAAGACTGACTACCGTAAACCGATAGAAATTCTAGAGTTGGGGTCTTGAGAAGTTAGAAATCTTATAAAGAAAAGGACAGTTTTGAG

mRNA sequence

CTCAAAACAATTCCCAAATAACTCGCGGCAAAAGGGCTCAGTGCCCTAGACTCCCTCGTCCTCACTTAAACCTCAACTCTGAAAATCTGAGAGAGGCATTTCGTCGAGCACAACTTTCGACTCTCAAATGGCGCTTTCGATTTGAGACGTTAGGGTTTCTCTTTGACAGTCATTGCAAGTACAATGTTCGGAGCTCAACCGTCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCCTCGCCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTCGGAACTCCATCAACGTCGACTTTTGCCACTGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTCCACAACAGCAACAGCAGCAGCAGCAGTCGCCGTTGTTTCCGCAACCAGCCGCCACCGGATTCGGTTTCCAGACTCCGTTTGCAACGCCTCAGTCTAGTCCATTTCCAAATGCTCAATTGACCACTCAGATGGCGCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAAGGACGACGCTGGAAACTCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGGCTATGGCAAAGCTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATGCTGAGAGACTGCGGATGACCCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGGTCCAAAGATTGAAACAGAAGGAGCAAGGTCTGCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCCCTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGGGAGGCTGAATTGGCTGAGAAGTTAGCCTTGATATCGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAATTTGCTTACAACTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGCAATTCCATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAGCAGACCGAGGCCATTGCTAGACTTGGAAATGTTTTAAAGCGTGATGTTAGAGACATGGAAATCATAATGGCCGAAGACAAAGAGATGACAGATGCTGCGAGTTAAAAGAAATTGAGTTCACATTTCTAGCCGTTTGTTTCGTTTTTGTTATAGATATACTTGGCTTGATTTTTCTAAAAGGAAAAATTAAAATCCGTTTTTAAAAAAATTTATATACTGCCCAATTAATTCGTCAAGTGCTGGCCGACATCTCTTATGAGAGACCTGCGTTAGTATTTCGTTAACATAGAGTCAATTTGAACTGCTTAATACCTATTCGATTTTGATTTGATGCAGTGTTAAAGTAATGGGGTCATATTCATAAGGCAACATGAACAGTTGCTATGTTGGTTGATTAACGTAGTCGGCATCAGCCAGCAGGGCATTTGATTCATCTTTTCCTTATCAGGTGAGGTGACTATCCATCCTACTCATGAGAAAACCCTTTAAAATCTTGGCATTTGGATGTTTATGCCTCTTTATTATAAAACCTTATGCTAGGAAGAGTAGTAGAGTGAAACTGGAGGGGTCATGCTAGAGAAACAAATGTTATATAGAAACGGAAAGAAGACTGACTACCGTAAACCGATAGAAATTCTAGAGTTGGGGTCTTGAGAAGTTAGAAATCTTATAAAGAAAAGGACAGTTTTGAG

Coding sequence (CDS)

ATGTTCGGAGCTCAACCGTCCTCCTCCGCCTTCGGCACTCCACAATCAACTCCGGCCTTTGGCACGCCGGCGTCCACTCCTGCCTTCGGAACTCCCTCGCCGTCTCCTGCATTTGGAAACCTTTCCTCAACTCCTGCCTTCGGAACTCCATCAACGTCGACTTTTGCCACTGGCTTCGGCTCGTCTCTCTTCTCCACTCCATTCTCTTCTCAGCCTCCACAACAGCAACAGCAGCAGCAGCAGTCGCCGTTGTTTCCGCAACCAGCCGCCACCGGATTCGGTTTCCAGACTCCGTTTGCAACGCCTCAGTCTAGTCCATTTCCAAATGCTCAATTGACCACTCAGATGGCGCCGGTGGCACCGCTTCCTTTCTCCCTGGCAGATCGAGATATTCAAGCAATTGTTGAGGCTTACAAGGACGACGCTGGAAACTCTAAGTATGCTTTCAAGCATTTGTTGTTCAGTGTAACTGATCCTCAATATAGGGCGAAGCCTGCTGGTGTATCGGATATAATGTGGGCTGAGGCTATGGCAAAGCTTGAAGGCATGGAAAGTGCTGATAGAGAGCGATTGTGGCCACAGCTTGTTCAAGGTTTTAAGGATTTATCTCAGCGCTTGAAGATTCAAGATGAAGTCATTCTCTCTGATGCTGAGAGACTGCGGATGACCCAAAGCAATGTCAAAATGCTTCAGAGGCATTTTCTAGCTGATACTCTACCTTGGGTCCAAAGATTGAAACAGAAGGAGCAAGGTCTGCAAAGGCGTCTGTTGAGAGTTATGAGAATTGTGGAGGCCCTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGGGAGGCTGAATTGGCTGAGAAGTTAGCCTTGATATCGAGGCAGTTGAAAGGATCTGGGGCAGAGCTTTCAAGGAGGGTGCAAAATTTGCTTACAACTACTCGTGGTCAAGCAAATGGCTCCGGTGCTGGCAATTCCATCTATCTTCAAGGATCGGCAAAAATACACGAACAGAGTCTTGCTGATATGCAGGAGGTTTTGCAGCAGCAGACCGAGGCCATTGCTAGACTTGGAAATGTTTTAAAGCGTGATGTTAGAGACATGGAAATCATAATGGCCGAAGACAAAGAGATGACAGATGCTGCGAGTTAA

Protein sequence

MFGAQPSSSAFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQLTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRDVRDMEIIMAEDKEMTDAAS

Homology

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BLAST of Tan0003157 vs. ExPASy Swiss-Prot
Match: Q8GYF7 (Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 7.7e-139
Identity = 268/374 (71.66%), Postives = 314/374 (83.96%), Query Frame = 0


Query: 11  FGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFAT-GFGSSLFSTPFS 70
           FGTP S+P+FGTP+STPAFGT   SPAFG  S+TPAFGTPS  +F++ GFGSSLFS+PFS
Sbjct: 2   FGTPSSSPSFGTPSSTPAFGT--SSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFS 61

Query: 71  SQPPQQQQQQQQ----SPLFPQPAATGFGFQTPF----ATPQSSPFPNAQLTTQMAPVAP 130
           SQ PQQQQQQQQ    S LF Q  ++ FGFQ+PF       Q +PFPNAQLTTQMAPVAP
Sbjct: 62  SQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAP 121

Query: 131 LPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 190
           +P+SLADRD+QAI+EAYK+D  N KYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLE
Sbjct: 122 IPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLE 181

Query: 191 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLPW 250
           GM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P 
Sbjct: 182 GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPS 241

Query: 251 VQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAELS 310
           ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  I+RQ+KG GAELS
Sbjct: 242 IERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELS 301

Query: 311 RRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRD 370
           RRVQ+L T +R QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD
Sbjct: 302 RRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRD 361

Query: 371 VRDMEIIMAEDKEM 376
           +RDMEI++AED EM
Sbjct: 362 MRDMEIMVAEDTEM 373

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BLAST of Tan0003157 vs. ExPASy Swiss-Prot
Match: Q8BTS4 (Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-08
Identity = 56/204 (27.45%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 165 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQ 224
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 363

Query: 225 SNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAE 284
            ++  LQ++    T+  + + K+K   L  R L+V+   E     G    +   E +L  
Sbjct: 364 EDISELQKN-QTTTMAKIAQYKRKLMELSHRTLQVLIKQEIQRKSG--YAIQADEEQLRV 423

Query: 285 KLALISRQLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVL 344
           +L  I  +L  +  +   R+  L++  R Q N  GA  S   +    I    L ++++ L
Sbjct: 424 QLDTIQGEL-NAPTQFKGRLNELMSQIRMQ-NHFGAVKS---EEKYYIDADLLREIKQHL 483

Query: 345 QQQTEAIARLGNVLKRDVRDMEII 369
           +QQ E ++ L +++K D+ D++++
Sbjct: 484 KQQQEGLSHLISIIKDDLEDIKLV 494

[Close]

BLAST of Tan0003157 vs. ExPASy Swiss-Prot
Match: P70582 (Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-08
Identity = 56/204 (27.45%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 165 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQ 224
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 304 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 363

Query: 225 SNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAE 284
            ++  LQ++    T+  + + K+K   L  R L+V+   E     G    +   E +L  
Sbjct: 364 EDISELQKN-QTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSG--YAIQAEEEQLRV 423

Query: 285 KLALISRQLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVL 344
           +L  I  +L  +  +   R+  L++  R Q N  GA  S   +    I    L ++++ L
Sbjct: 424 QLDTIQGEL-NAPTQFKGRLNELMSQIRMQ-NHFGAVKS---EEKYYIDADLLREIKQHL 483

Query: 345 QQQTEAIARLGNVLKRDVRDMEII 369
           +QQ E ++ L +++K D+ D++++
Sbjct: 484 KQQQEGLSHLISIIKDDLEDIKLV 494

[Close]

BLAST of Tan0003157 vs. ExPASy Swiss-Prot
Match: Q7Z3B4 (Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-07
Identity = 55/204 (26.96%), Postives = 104/204 (50.98%), Query Frame = 0


Query: 165 PAGVSDIMWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQ 224
           PAGV  I+W +A      +++ D E+L P  + GFK+L +RLK+QD++      RL +  
Sbjct: 301 PAGVDPIIWEQAK-----VDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS 360

Query: 225 SNVKMLQRHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAE 284
            ++  LQ++    ++  + + K+K   L  R L+V+   E     G    +   E +L  
Sbjct: 361 EDISELQKN-QTTSVAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSG--YAIQADEEQLRV 420

Query: 285 KLALISRQLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVL 344
           +L  I  +L  +  +   R+  L++  R Q N  GA  S   +    I    L ++++ L
Sbjct: 421 QLDTIQGEL-NAPTQFKGRLNELMSQIRMQ-NHFGAVRS---EERYYIDADLLREIKQHL 480

Query: 345 QQQTEAIARLGNVLKRDVRDMEII 369
           +QQ E ++ L +++K D+ D++++
Sbjct: 481 KQQQEGLSHLISIIKDDLEDIKLV 491

[Close]

BLAST of Tan0003157 vs. ExPASy Swiss-Prot
Match: Q9VDV3 (Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-06
Identity = 50/134 (37.31%), Postives = 68/134 (50.75%), Query Frame = 0


Query: 2   FGAQPSSSAFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTP-STSTFATGFG 61
           FG   ++ AFG P +T AFG PA+TPAFG  + +PAFG  ++TPAFG P +TS F     
Sbjct: 92  FGTAAATPAFGIPAATSAFGAPAATPAFGAAAATPAFGAPAATPAFGAPAATSAFGAPAA 151

Query: 62  SSLFSTPFSSQPPQQQQQQQQSPLFPQPA------ATGFGFQTP-FATPQSSPFPNAQLT 121
           ++ F  P S+          Q+  F  PA      A  F F TP  + P ++P      T
Sbjct: 152 TTAFGAPAST----------QASAFGAPAPAVGTVAPTFSFATPATSAPTTAPPAFGFGT 211

Query: 122 TQMAPVAPLPFSLA 128
           T     A +P SL+
Sbjct: 212 TATTAAAAMPASLS 215

[Close]

BLAST of Tan0003157 vs. NCBI nr
Match: XP_038893426.1 (nuclear pore complex protein NUP54 [Benincasa hispida])

HSP 1 Score: 674.9 bits (1740), Expect = 4.2e-190
Identity = 364/389 (93.57%), Postives = 370/389 (95.12%), Query Frame = 0


Query: 1   MFGAQPSSS---------AFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPS 60
           MFGAQPSSS         AFGTPQSTPAFGTPASTPAFGTPS SPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQ 120
           TS+FATGFGSSLFSTPFSSQP Q QQQ QQSPLFPQPAATGFGFQTPFA PQS+PFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQPQQQLQQSPLFPQPAATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGN KYAFKHLLFSVTDPQYR KPAGVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRVKPAGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD++RLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSDRLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALI+R
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLT TRGQANGS AGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTITRGQANGSSAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDAAS 381
           ARLGNVLKRDVRDMEIIMAED+EMTD AS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDREMTDDAS 389

[Close]

BLAST of Tan0003157 vs. NCBI nr
Match: XP_022151739.1 (nuclear pore complex protein NUP54 [Momordica charantia])

HSP 1 Score: 672.5 bits (1734), Expect = 2.1e-189
Identity = 359/380 (94.47%), Postives = 367/380 (96.58%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFATGFG 60
           MFGAQPSSSAFGTPQSTPAFGTP+STPAFGTPS SPAFGNLSSTPAFGTPSTSTF TGFG
Sbjct: 1   MFGAQPSSSAFGTPQSTPAFGTPSSTPAFGTPSASPAFGNLSSTPAFGTPSTSTFGTGFG 60

Query: 61  SSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQLTTQMAPVA 120
           SSLFSTPFSSQP QQ QQQQQSPLF QP ATGFGFQTPFA PQS+PFPNAQLTTQMAPVA
Sbjct: 61  SSLFSTPFSSQPSQQPQQQQQSPLFQQPPATGFGFQTPFAAPQSTPFPNAQLTTQMAPVA 120

Query: 121 PLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKL 180
           PLPFS+ADRDIQAIVEAYKD+AGN KYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KL
Sbjct: 121 PLPFSMADRDIQAIVEAYKDEAGNPKYAFKHLLFSVTDPQFRAKPAGVSDIMWAEAMTKL 180

Query: 181 EGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLP 240
           EGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLP
Sbjct: 181 EGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLP 240

Query: 241 WVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAEL 300
           WVQRL+QKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALI+RQLKGSGAEL
Sbjct: 241 WVQRLRQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAEL 300

Query: 301 SRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKR 360
           SRRVQNLLT TRGQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKR
Sbjct: 301 SRRVQNLLTFTRGQANGSNSGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGIVLKR 360

Query: 361 DVRDMEIIMAEDKEMTDAAS 381
           DVRDMEIIMAEDKEMTD AS
Sbjct: 361 DVRDMEIIMAEDKEMTDDAS 380

[Close]

BLAST of Tan0003157 vs. NCBI nr
Match: XP_004135312.1 (nuclear pore complex protein NUP54 [Cucumis sativus] >KGN51680.1 hypothetical protein Csa_009114 [Cucumis sativus])

HSP 1 Score: 666.4 bits (1718), Expect = 1.5e-187
Identity = 359/389 (92.29%), Postives = 365/389 (93.83%), Query Frame = 0


Query: 1   MFGAQPSSS---------AFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPS 60
           MFGAQPSSS         AFGTPQSTPAFGTPASTPAFGTPS SPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQ 120
           TS+FATGFGSSLFSTPFSSQP QQQQQ QQSP+FPQ +ATGFGFQTPF  PQS+PFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATGFGFQTPFTAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGN KYAFKHLLFSVTDPQYR KP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISR 300
           RHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCRVPVMKGEAELAEKLALI+R
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLT TRGQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDAAS 381
           ARLGNVLKRDVRDMEIIMAEDKEM D AS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Tan0003157 vs. NCBI nr
Match: XP_008446043.1 (PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo] >KAA0034202.1 nuclear pore complex protein NUP54 [Cucumis melo var. makuwa] >TYK15718.1 nuclear pore complex protein NUP54 [Cucumis melo var. makuwa])

HSP 1 Score: 664.5 bits (1713), Expect = 5.6e-187
Identity = 360/389 (92.54%), Postives = 367/389 (94.34%), Query Frame = 0


Query: 1   MFGAQPSSS---------AFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPS 60
           MFGAQ SSS         AFGTPQSTPAFGTPASTPAFGTPS SPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQ 120
           TS+FATGFGSSLFSTPFSSQP QQQQQ QQS LFPQ +ATGFGFQTPFA PQS+PFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGN KYAFKHLLFSVTDPQYRAKP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV+KGEAELAEKLALI+R
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELS+RVQNLLT TRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDAAS 381
           ARLGNVLKRDVRDMEIIMAEDKEM D AS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Tan0003157 vs. NCBI nr
Match: KAG6573649.1 (Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 647.1 bits (1668), Expect = 9.3e-182
Identity = 345/379 (91.03%), Postives = 357/379 (94.20%), Query Frame = 0


Query: 2   FGAQPSSSAFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFATGFGS 61
           FG   S+ AFGTPQSTPAFGTPASTPAFGTPS SPAFGN SSTPAFGTPS+S+FATGFGS
Sbjct: 28  FGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNFSSTPAFGTPSSSSFATGFGS 87

Query: 62  SLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQLTTQMAPVAP 121
           SLFSTPFSSQP Q QQQQQQSPLF  PAATGFGFQTPFA PQSSPFPNAQLTTQMAPVAP
Sbjct: 88  SLFSTPFSSQPSQPQQQQQQSPLFQLPAATGFGFQTPFAAPQSSPFPNAQLTTQMAPVAP 147

Query: 122 LPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 181
           LPFS+ADRDIQAIVEAYKDDAGN KYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLE
Sbjct: 148 LPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 207

Query: 182 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLPW 241
           GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVK LQRHFLADTLPW
Sbjct: 208 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQRHFLADTLPW 267

Query: 242 VQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAELS 301
           +QRLKQKEQGLQRRLLR+MR+VEALESKGCRVP+M GEAELAE+LALI+RQL+GSGAELS
Sbjct: 268 IQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQLRGSGAELS 327

Query: 302 RRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRD 361
           RRV+NLLT T GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRD
Sbjct: 328 RRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIARLGTVLKRD 387

Query: 362 VRDMEIIMAEDKEMTDAAS 381
           VRDMEIIMAEDKEM D  S
Sbjct: 388 VRDMEIIMAEDKEMIDDLS 406

[Close]

BLAST of Tan0003157 vs. ExPASy TrEMBL
Match: A0A6J1DDY9 (nuclear pore complex protein NUP54 OS=Momordica charantia OX=3673 GN=LOC111019650 PE=4 SV=1)

HSP 1 Score: 672.5 bits (1734), Expect = 1.0e-189
Identity = 359/380 (94.47%), Postives = 367/380 (96.58%), Query Frame = 0


Query: 1   MFGAQPSSSAFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFATGFG 60
           MFGAQPSSSAFGTPQSTPAFGTP+STPAFGTPS SPAFGNLSSTPAFGTPSTSTF TGFG
Sbjct: 1   MFGAQPSSSAFGTPQSTPAFGTPSSTPAFGTPSASPAFGNLSSTPAFGTPSTSTFGTGFG 60

Query: 61  SSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQLTTQMAPVA 120
           SSLFSTPFSSQP QQ QQQQQSPLF QP ATGFGFQTPFA PQS+PFPNAQLTTQMAPVA
Sbjct: 61  SSLFSTPFSSQPSQQPQQQQQSPLFQQPPATGFGFQTPFAAPQSTPFPNAQLTTQMAPVA 120

Query: 121 PLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKL 180
           PLPFS+ADRDIQAIVEAYKD+AGN KYAFKHLLFSVTDPQ+RAKPAGVSDIMWAEAM KL
Sbjct: 121 PLPFSMADRDIQAIVEAYKDEAGNPKYAFKHLLFSVTDPQFRAKPAGVSDIMWAEAMTKL 180

Query: 181 EGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLP 240
           EGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLP
Sbjct: 181 EGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLP 240

Query: 241 WVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAEL 300
           WVQRL+QKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALI+RQLKGSGAEL
Sbjct: 241 WVQRLRQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITRQLKGSGAEL 300

Query: 301 SRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKR 360
           SRRVQNLLT TRGQANGS +GNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLG VLKR
Sbjct: 301 SRRVQNLLTFTRGQANGSNSGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGIVLKR 360

Query: 361 DVRDMEIIMAEDKEMTDAAS 381
           DVRDMEIIMAEDKEMTD AS
Sbjct: 361 DVRDMEIIMAEDKEMTDDAS 380

[Close]

BLAST of Tan0003157 vs. ExPASy TrEMBL
Match: A0A0A0KPW8 (Nup54 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589970 PE=4 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 7.2e-188
Identity = 359/389 (92.29%), Postives = 365/389 (93.83%), Query Frame = 0


Query: 1   MFGAQPSSS---------AFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPS 60
           MFGAQPSSS         AFGTPQSTPAFGTPASTPAFGTPS SPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQPSSSAFGTPQSSPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQ 120
           TS+FATGFGSSLFSTPFSSQP QQQQQ QQSP+FPQ +ATGFGFQTPF  PQS+PFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSPMFPQSSATGFGFQTPFTAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGN KYAFKHLLFSVTDPQYR KP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRTKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISR 300
           RHFLADTLPWVQRLKQKEQGLQR LLRVMRIVEALESKGCRVPVMKGEAELAEKLALI+R
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRHLLRVMRIVEALESKGCRVPVMKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELSRRVQNLLT TRGQANGSG GNSIY QGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSRRVQNLLTVTRGQANGSGPGNSIYFQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDAAS 381
           ARLGNVLKRDVRDMEIIMAEDKEM D AS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Tan0003157 vs. ExPASy TrEMBL
Match: A0A5A7SSX4 (Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002170 PE=4 SV=1)

HSP 1 Score: 664.5 bits (1713), Expect = 2.7e-187
Identity = 360/389 (92.54%), Postives = 367/389 (94.34%), Query Frame = 0


Query: 1   MFGAQPSSS---------AFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPS 60
           MFGAQ SSS         AFGTPQSTPAFGTPASTPAFGTPS SPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQ 120
           TS+FATGFGSSLFSTPFSSQP QQQQQ QQS LFPQ +ATGFGFQTPFA PQS+PFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGN KYAFKHLLFSVTDPQYRAKP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV+KGEAELAEKLALI+R
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELS+RVQNLLT TRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDAAS 381
           ARLGNVLKRDVRDMEIIMAEDKEM D AS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Tan0003157 vs. ExPASy TrEMBL
Match: A0A1S3BE47 (nuclear pore complex protein NUP54 OS=Cucumis melo OX=3656 GN=LOC103488894 PE=4 SV=1)

HSP 1 Score: 664.5 bits (1713), Expect = 2.7e-187
Identity = 360/389 (92.54%), Postives = 367/389 (94.34%), Query Frame = 0


Query: 1   MFGAQPSSS---------AFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPS 60
           MFGAQ SSS         AFGTPQSTPAFGTPASTPAFGTPS SPAFGNLSSTPAFGTPS
Sbjct: 1   MFGAQTSSSAFGTPQSTPAFGTPQSTPAFGTPASTPAFGTPSASPAFGNLSSTPAFGTPS 60

Query: 61  TSTFATGFGSSLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQ 120
           TS+FATGFGSSLFSTPFSSQP QQQQQ QQS LFPQ +ATGFGFQTPFA PQS+PFPNAQ
Sbjct: 61  TSSFATGFGSSLFSTPFSSQPSQQQQQLQQSTLFPQSSATGFGFQTPFAAPQSTPFPNAQ 120

Query: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDI 180
           LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGN KYAFKHLLFSVTDPQYRAKP GVSDI
Sbjct: 121 LTTQMAPVAPLPFSLADRDIQAIVEAYKDDAGNPKYAFKHLLFSVTDPQYRAKPPGVSDI 180

Query: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQ 240
           MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSD+ERLRMTQSNVKMLQ
Sbjct: 181 MWAEAMAKLEGMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDSERLRMTQSNVKMLQ 240

Query: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISR 300
           RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPV+KGEAELAEKLALI+R
Sbjct: 241 RHFLADTLPWVQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVVKGEAELAEKLALITR 300

Query: 301 QLKGSGAELSRRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360
           QLKGSGAELS+RVQNLLT TRGQANGSG GNSIYLQGSAKIHEQSLADMQEVLQQQTEAI
Sbjct: 301 QLKGSGAELSKRVQNLLTITRGQANGSGPGNSIYLQGSAKIHEQSLADMQEVLQQQTEAI 360

Query: 361 ARLGNVLKRDVRDMEIIMAEDKEMTDAAS 381
           ARLGNVLKRDVRDMEIIMAEDKEM D AS
Sbjct: 361 ARLGNVLKRDVRDMEIIMAEDKEMADDAS 389

[Close]

BLAST of Tan0003157 vs. ExPASy TrEMBL
Match: A0A6J1G105 (nuclear pore complex protein NUP54 OS=Cucurbita moschata OX=3662 GN=LOC111449684 PE=4 SV=1)

HSP 1 Score: 639.4 bits (1648), Expect = 9.4e-180
Identity = 343/379 (90.50%), Postives = 355/379 (93.67%), Query Frame = 0


Query: 2   FGAQPSSSAFGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFATGFGS 61
           FG   S+ AFGTPQSTPAFGTP STPAFGTPS SPAFGN SSTPAFGTPS+S+FATGFGS
Sbjct: 29  FGTPQSTPAFGTPQSTPAFGTPQSTPAFGTPSASPAFGNFSSTPAFGTPSSSSFATGFGS 88

Query: 62  SLFSTPFSSQPPQQQQQQQQSPLFPQPAATGFGFQTPFATPQSSPFPNAQLTTQMAPVAP 121
           SLFSTPFSSQP   QQQQQQSPLF  PAATGFGFQTPFA PQSSPFPNAQLTTQMAPVAP
Sbjct: 89  SLFSTPFSSQP--SQQQQQQSPLFQLPAATGFGFQTPFAAPQSSPFPNAQLTTQMAPVAP 148

Query: 122 LPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 181
           LPFS+ADRDIQAIVEAYKDDAGN KYAFK LLFSVTDPQYRAKPAGVSDIMWAEAMAKLE
Sbjct: 149 LPFSMADRDIQAIVEAYKDDAGNPKYAFKRLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 208

Query: 182 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLPW 241
           GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVK LQRHFLADTLPW
Sbjct: 209 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKTLQRHFLADTLPW 268

Query: 242 VQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAELS 301
           +QRLKQKEQGLQRRLLR+MR+VEALESKGCRVP+M GEAELAE+LALI+RQL+GSGAELS
Sbjct: 269 IQRLKQKEQGLQRRLLRMMRVVEALESKGCRVPIMTGEAELAERLALITRQLRGSGAELS 328

Query: 302 RRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRD 361
           RRV+NLLT T GQANGSGAGNSIYLQGS KIHEQSLADMQEVLQQQTEAIARLG VLKRD
Sbjct: 329 RRVKNLLTITCGQANGSGAGNSIYLQGSTKIHEQSLADMQEVLQQQTEAIARLGTVLKRD 388

Query: 362 VRDMEIIMAEDKEMTDAAS 381
           VRDMEIIMAEDKEM D  S
Sbjct: 389 VRDMEIIMAEDKEMIDDLS 405

[Close]

BLAST of Tan0003157 vs. TAIR 10
Match: AT1G24310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). )

HSP 1 Score: 495.0 bits (1273), Expect = 5.5e-140
Identity = 268/374 (71.66%), Postives = 314/374 (83.96%), Query Frame = 0


Query: 11  FGTPQSTPAFGTPASTPAFGTPSPSPAFGNLSSTPAFGTPSTSTFAT-GFGSSLFSTPFS 70
           FGTP S+P+FGTP+STPAFGT   SPAFG  S+TPAFGTPS  +F++ GFGSSLFS+PFS
Sbjct: 2   FGTPSSSPSFGTPSSTPAFGT--SSPAFGTPSATPAFGTPSNPSFSSGGFGSSLFSSPFS 61

Query: 71  SQPPQQQQQQQQ----SPLFPQPAATGFGFQTPF----ATPQSSPFPNAQLTTQMAPVAP 130
           SQ PQQQQQQQQ    S LF Q  ++ FGFQ+PF       Q +PFPNAQLTTQMAPVAP
Sbjct: 62  SQQPQQQQQQQQQQQPSSLFQQQPSSNFGFQSPFNNTAQQQQQTPFPNAQLTTQMAPVAP 121

Query: 131 LPFSLADRDIQAIVEAYKDDAGNSKYAFKHLLFSVTDPQYRAKPAGVSDIMWAEAMAKLE 190
           +P+SLADRD+QAI+EAYK+D  N KYAF+HLLFSVT+PQYR KPA VSDIMWAEAM+KLE
Sbjct: 122 IPYSLADRDVQAIIEAYKEDPTNPKYAFQHLLFSVTEPQYRVKPAAVSDIMWAEAMSKLE 181

Query: 191 GMESADRERLWPQLVQGFKDLSQRLKIQDEVILSDAERLRMTQSNVKMLQRHFLADTLPW 250
           GM+S +RERLWPQLVQGFKDLSQRLK+QDEV++SD +R++ TQSNVKMLQRH  A T P 
Sbjct: 182 GMDSTERERLWPQLVQGFKDLSQRLKLQDEVLVSDRDRIKTTQSNVKMLQRHLQASTFPS 241

Query: 251 VQRLKQKEQGLQRRLLRVMRIVEALESKGCRVPVMKGEAELAEKLALISRQLKGSGAELS 310
           ++RL+QKEQ LQRR+LRVMRI+E LE KG R+P+ KGEAEL+EKL  I+RQ+KG GAELS
Sbjct: 242 IERLRQKEQSLQRRMLRVMRIIEGLEGKGFRLPLTKGEAELSEKLTAITRQVKGPGAELS 301

Query: 311 RRVQNLLTTTRGQANGSGAGNSIYLQGSAKIHEQSLADMQEVLQQQTEAIARLGNVLKRD 370
           RRVQ+L T +R QAN   AG+S+YL GS KI EQSL DMQEVLQQ+TEAI RLGNVLKRD
Sbjct: 302 RRVQSLQTISRAQANSIAAGSSLYLPGSTKIDEQSLIDMQEVLQQETEAIGRLGNVLKRD 361

Query: 371 VRDMEIIMAEDKEM 376
           +RDMEI++AED EM
Sbjct: 362 MRDMEIMVAEDTEM 373

The following BLAST results are available for this feature:

BLAST of Tan0003157 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYF7	7.7e-139	71.66	Nuclear pore complex protein NUP54 OS=Arabidopsis thaliana OX=3702 GN=NUP54 PE=1...	[more]
Q8BTS4	4.9e-08	27.45	Nuclear pore complex protein Nup54 OS=Mus musculus OX=10090 GN=Nup54 PE=1 SV=1	[more]
P70582	4.9e-08	27.45	Nuclear pore complex protein Nup54 OS=Rattus norvegicus OX=10116 GN=Nup54 PE=1 S...	[more]
Q7Z3B4	1.9e-07	26.96	Nucleoporin p54 OS=Homo sapiens OX=9606 GN=NUP54 PE=1 SV=2	[more]
Q9VDV3	1.6e-06	37.31	Nuclear pore complex protein Nup58 OS=Drosophila melanogaster OX=7227 GN=Nup58 P...	[more]

BLAST of Tan0003157 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893426.1	4.2e-190	93.57	nuclear pore complex protein NUP54 [Benincasa hispida]	[more]
XP_022151739.1	2.1e-189	94.47	nuclear pore complex protein NUP54 [Momordica charantia]	[more]
XP_004135312.1	1.5e-187	92.29	nuclear pore complex protein NUP54 [Cucumis sativus] >KGN51680.1 hypothetical pr...	[more]
XP_008446043.1	5.6e-187	92.54	PREDICTED: nuclear pore complex protein NUP54 [Cucumis melo] >KAA0034202.1 nucle...	[more]
KAG6573649.1	9.3e-182	91.03	Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of Tan0003157 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDY9	1.0e-189	94.47	nuclear pore complex protein NUP54 OS=Momordica charantia OX=3673 GN=LOC11101965...	[more]
A0A0A0KPW8	7.2e-188	92.29	Nup54 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G589970 PE=4 ...	[more]
A0A5A7SSX4	2.7e-187	92.54	Nuclear pore complex protein NUP54 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BE47	2.7e-187	92.54	nuclear pore complex protein NUP54 OS=Cucumis melo OX=3656 GN=LOC103488894 PE=4 ...	[more]
A0A6J1G105	9.4e-180	90.50	nuclear pore complex protein NUP54 OS=Cucurbita moschata OX=3662 GN=LOC111449684...	[more]

BLAST of Tan0003157 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G24310.1	5.5e-140	71.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 330..350
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..110
None	No IPR available	PANTHER	PTHR13000:SF0	NUCLEOPORIN P54	coord: 2..374
IPR025712	Nucleoporin Nup54, alpha-helical domain	PFAM	PF13874	Nup54	coord: 164..308 e-value: 3.0E-29 score: 101.9
IPR024864	Nucleoporin Nup54/Nup57/Nup44	PANTHER	PTHR13000	NUCLEOPORIN P54	coord: 2..374

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003157.1	Tan0003157.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006607	NLS-bearing protein import into nucleus
biological_process	GO:0006999	nuclear pore organization
biological_process	GO:0036228	protein localization to nuclear inner membrane
cellular_component	GO:0044613	nuclear pore central transport channel
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0017056	structural constituent of nuclear pore