Tan0003033 (gene) Snake gourd v1

Overview
NameTan0003033
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTransmembrane protein
LocationLG06: 65635479 .. 65635928 (-)
RNA-Seq ExpressionTan0003033
SyntenyTan0003033
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATATCAGCCTCAAAACGAGTCAAAAACTCACTTTCAAACTCGCCCGATTTCGACTCAGCCTGCGATTCAACCTTCTCCCACTGCCTAGCCCTAACACAACACGCATACGGTGGCGTTTTCCCCTACCAACTCTGCGCCGCCGCCGAGCACCTGCACCACCACCTCACCGGCGTCCGACCCCATCCACTCATCGCCAAGTGGCTTCCCTCTCCTCCGACTCTGCTCCAGGTCGACTCAGCCCTCCGAGCCGTCAATCGCGAGGACACGGATCATGAAGACGAAACCCTAGGCCCGATCCGCTTCAAGCGTTGGGCAATCGAGCTATTCGCAGAGGCTGTGGCGAGGAACGTCGGAAAAGAGGTGATGTTTCGAGTTCCGGTCGGAATTGCGCGAATCGGTGCCGTGACTCGGTCCGGAAAGGACCTGGTCGGGATTGATGAGTAG

mRNA sequence

ATGGGAATATCAGCCTCAAAACGAGTCAAAAACTCACTTTCAAACTCGCCCGATTTCGACTCAGCCTGCGATTCAACCTTCTCCCACTGCCTAGCCCTAACACAACACGCATACGGTGGCGTTTTCCCCTACCAACTCTGCGCCGCCGCCGAGCACCTGCACCACCACCTCACCGGCGTCGACTCAGCCCTCCGAGCCGTCAATCGCGAGGACACGGATCATGAAGACGAAACCCTAGGCCCGATCCGCTTCAAGCGTTGGGCAATCGAGCTATTCGCAGAGGCTGTGGCGAGGAACGTCGGAAAAGAGGTGATGTTTCGAGTTCCGGTCGGAATTGCGCGAATCGGTGCCGTGACTCGGTCCGGAAAGGACCTGGTCGGGATTGATGAGTAG

Coding sequence (CDS)

ATGGGAATATCAGCCTCAAAACGAGTCAAAAACTCACTTTCAAACTCGCCCGATTTCGACTCAGCCTGCGATTCAACCTTCTCCCACTGCCTAGCCCTAACACAACACGCATACGGTGGCGTTTTCCCCTACCAACTCTGCGCCGCCGCCGAGCACCTGCACCACCACCTCACCGGCGTCGACTCAGCCCTCCGAGCCGTCAATCGCGAGGACACGGATCATGAAGACGAAACCCTAGGCCCGATCCGCTTCAAGCGTTGGGCAATCGAGCTATTCGCAGAGGCTGTGGCGAGGAACGTCGGAAAAGAGGTGATGTTTCGAGTTCCGGTCGGAATTGCGCGAATCGGTGCCGTGACTCGGTCCGGAAAGGACCTGGTCGGGATTGATGAGTAG

Protein sequence

MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTGVDSALRAVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVGKEVMFRVPVGIARIGAVTRSGKDLVGIDE
Homology
BLAST of Tan0003033 vs. NCBI nr
Match: XP_023539875.1 (uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 1.9e-49
Identity = 114/150 (76.00%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT  
Sbjct: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  -----------------GVDSALRAVNREDTDHED-ETLGPIRFKRWAIELFAEAVARNV 120
                             VDSALRAVNRED D ED ETLGPIRFKRWAIELFAEAV +NV
Sbjct: 61  RPHPLISKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAIELFAEAVVKNV 120

Query: 121 GKEVMFRVPV---GIARIGAVTRSGKDLVG 128
            KEVMFRVPV   GIA IGAVTRSGKDLVG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG 150

BLAST of Tan0003033 vs. NCBI nr
Match: KAG7029126.1 (hypothetical protein SDJN02_10311, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.9 bits (520), Expect = 4.2e-49
Identity = 113/150 (75.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT  
Sbjct: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  -----------------GVDSALRAVNREDTDHED-ETLGPIRFKRWAIELFAEAVARNV 120
                             VDSALRAVNRED D ED ETLGPIRFKRWA+ELFAEAV +NV
Sbjct: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120

Query: 121 GKEVMFRVPV---GIARIGAVTRSGKDLVG 128
            KEVMFRVPV   GIA IGAVTRSGKDLVG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG 150

BLAST of Tan0003033 vs. NCBI nr
Match: KAG6597681.1 (DNA-directed RNA polymerases II and V subunit 8A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.9 bits (520), Expect = 4.2e-49
Identity = 113/150 (75.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT  
Sbjct: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  -----------------GVDSALRAVNREDTDHED-ETLGPIRFKRWAIELFAEAVARNV 120
                             VDSALRAVNRED D ED ETLGPIRFKRWA+ELFAEAV +NV
Sbjct: 61  RPHPLIAKWLPSPLTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120

Query: 121 GKEVMFRVPV---GIARIGAVTRSGKDLVG 128
            KEVMFRVPV   GIA IGAVTRSGKDLVG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG 150

BLAST of Tan0003033 vs. NCBI nr
Match: XP_022932745.1 (uncharacterized protein LOC111439202 [Cucurbita moschata])

HSP 1 Score: 203.8 bits (517), Expect = 9.3e-49
Identity = 112/150 (74.67%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRV+NSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT  
Sbjct: 1   MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  -----------------GVDSALRAVNREDTDHED-ETLGPIRFKRWAIELFAEAVARNV 120
                             VDSALRAVNRED D ED ETLGPIRFKRWA+ELFAEAV +NV
Sbjct: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120

Query: 121 GKEVMFRVPV---GIARIGAVTRSGKDLVG 128
            KEVMFRVPV   GIA IGAVTRSGKDLVG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG 150

BLAST of Tan0003033 vs. NCBI nr
Match: XP_038878178.1 (uncharacterized protein LOC120070324 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 5.1e-47
Identity = 106/149 (71.14%), Postives = 117/149 (78.52%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRV+NSL+NS +FD AC+STFSHCLALTQHAY GVFPYQLCAAA+HLHH +T  
Sbjct: 1   MGISASKRVRNSLTNSLEFDLACNSTFSHCLALTQHAYDGVFPYQLCAAADHLHHLITVV 60

Query: 61  -----------------GVDSALRAVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVG 120
                             VDSALRAVNR+D+D E ETLGPIRFK WAIELFAEAVA+NVG
Sbjct: 61  RPHPLIANWLPSPPTRLQVDSALRAVNRDDSDREGETLGPIRFKHWAIELFAEAVAKNVG 120

Query: 121 KEVMFRVPV---GIARIGAVTRSGKDLVG 128
           K+VM RVPV   GIA IGAVTRSGKD+VG
Sbjct: 121 KKVMLRVPVGIAGIAGIGAVTRSGKDVVG 149

BLAST of Tan0003033 vs. ExPASy TrEMBL
Match: A0A6J1F2Z4 (uncharacterized protein LOC111439202 OS=Cucurbita moschata OX=3662 GN=LOC111439202 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.5e-49
Identity = 112/150 (74.67%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRV+NSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT  
Sbjct: 1   MGISASKRVRNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  -----------------GVDSALRAVNREDTDHED-ETLGPIRFKRWAIELFAEAVARNV 120
                             VDSALRAVNRED D ED ETLGPIRFKRWA+ELFAEAV +NV
Sbjct: 61  RPHPLIAKWLPSPPTRQQVDSALRAVNREDADREDEETLGPIRFKRWAMELFAEAVVKNV 120

Query: 121 GKEVMFRVPV---GIARIGAVTRSGKDLVG 128
            KEVMFRVPV   GIA IGAVTRSGKDLVG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG 150

BLAST of Tan0003033 vs. ExPASy TrEMBL
Match: A0A6J1I3X0 (uncharacterized protein LOC111470752 OS=Cucurbita maxima OX=3661 GN=LOC111470752 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 110/150 (73.33%), Postives = 113/150 (75.33%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MGISASKRVKNSLSNSPDFDSACDSTFSHCL LTQHAY GVFPYQLC AA+HLH  LT  
Sbjct: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 60

Query: 61  -----------------GVDSALRAVNREDTDHED-ETLGPIRFKRWAIELFAEAVARNV 120
                             VDSAL+AVNR D   ED ETLGPIRFK WAIELFAEAV +NV
Sbjct: 61  RPHPLISKWLPSPPTRLQVDSALQAVNRGDAGREDEETLGPIRFKHWAIELFAEAVVKNV 120

Query: 121 GKEVMFRVPV---GIARIGAVTRSGKDLVG 128
            KEVMFRVPV   GIA IGAVTRSGKDLVG
Sbjct: 121 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVG 150

BLAST of Tan0003033 vs. ExPASy TrEMBL
Match: A0A5D3D2N6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001950 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.6e-46
Identity = 104/149 (69.80%), Postives = 117/149 (78.52%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MG+SASKRV+NSL+NSP+FDSAC+STFSHCLALTQHAY GVFPYQLC AA+HLHH LT  
Sbjct: 1   MGLSASKRVRNSLTNSPEFDSACNSTFSHCLALTQHAYNGVFPYQLCTAADHLHHLLTVV 60

Query: 61  -----------------GVDSALRAVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVG 120
                             VDSALRAVNR+D+D E ETLG IRF+RWAIELFAEAV +NVG
Sbjct: 61  QPHPLITNWLPSPPTRLQVDSALRAVNRDDSDCEGETLGLIRFQRWAIELFAEAVVKNVG 120

Query: 121 KEVMFRVPV---GIARIGAVTRSGKDLVG 128
           K+VM RVP+   GIA IGAVTRSGKD+VG
Sbjct: 121 KKVMVRVPMGIAGIAGIGAVTRSGKDVVG 149

BLAST of Tan0003033 vs. ExPASy TrEMBL
Match: A0A1S3BXX1 (uncharacterized protein LOC103494601 OS=Cucumis melo OX=3656 GN=LOC103494601 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.6e-46
Identity = 104/149 (69.80%), Postives = 117/149 (78.52%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLT-- 60
           MG+SASKRV+NSL+NSP+FDSAC+STFSHCLALTQHAY GVFPYQLC AA+HLHH LT  
Sbjct: 1   MGLSASKRVRNSLTNSPEFDSACNSTFSHCLALTQHAYNGVFPYQLCTAADHLHHLLTVV 60

Query: 61  -----------------GVDSALRAVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVG 120
                             VDSALRAVNR+D+D E ETLG IRF+RWAIELFAEAV +NVG
Sbjct: 61  QPHPLITNWLPSPPTRLQVDSALRAVNRDDSDCEGETLGLIRFQRWAIELFAEAVVKNVG 120

Query: 121 KEVMFRVPV---GIARIGAVTRSGKDLVG 128
           K+VM RVP+   GIA IGAVTRSGKD+VG
Sbjct: 121 KKVMVRVPMGIAGIAGIGAVTRSGKDVVG 149

BLAST of Tan0003033 vs. ExPASy TrEMBL
Match: A0A6J1CX41 (uncharacterized protein LOC111015217 OS=Momordica charantia OX=3673 GN=LOC111015217 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.7e-46
Identity = 102/149 (68.46%), Postives = 114/149 (76.51%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTG- 60
           MGIS SKRV+NSLSNSP+FDSACDSTFSHCL+ TQHAY GVFPYQLCAAA HLH  LT  
Sbjct: 1   MGISPSKRVQNSLSNSPEFDSACDSTFSHCLSQTQHAYDGVFPYQLCAAAAHLHRLLTAV 60

Query: 61  ------------------VDSALRAVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVG 120
                             VDSALR + R D+D +DETLGPIRFKRWAIELFAEAVA NVG
Sbjct: 61  RPHPLILKWLPSPPTRLQVDSALRVIKRADSDRDDETLGPIRFKRWAIELFAEAVAENVG 120

Query: 121 KEVMFRVPV---GIARIGAVTRSGKDLVG 128
           +EV+FR+PV   GIA +GAVTR+GK+LVG
Sbjct: 121 REVLFRIPVGAAGIAGLGAVTRAGKNLVG 149

BLAST of Tan0003033 vs. TAIR 10
Match: AT2G43540.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 130.2 bits (326), Expect = 1.2e-30
Identity = 75/149 (50.34%), Postives = 93/149 (62.42%), Query Frame = 0

Query: 1   MGISASKRVKNSLSNSPDFDSACDSTFSHCLALTQHAYGGVFPYQLCAAAEHLHHHLTG- 60
           MGIS SKRV   LSNSP+FDSACDS +   L+L QHA+ GV PYQL +AA H+H +L+  
Sbjct: 1   MGISGSKRVTTILSNSPEFDSACDSAYDESLSLAQHAFAGVRPYQLVSAAAHIHRNLSAL 60

Query: 61  -----------------VDSALR-AVNREDTDHEDETLGPIRFKRWAIELFAEAVARNVG 120
                            VDSALR  V+R     E+E LG   FK+WA+E+FAEAV  N  
Sbjct: 61  RFPLITRWLSSPPSQSQVDSALRVTVSRVTAADEEEILGQEEFKKWAVEVFAEAVVGNAR 120

Query: 121 KEVMFRVP---VGIARIGAVTRSGKDLVG 128
           K +  R+P   VGI  IGAVTRSG++L+G
Sbjct: 121 KTIASRIPLGIVGIGGIGAVTRSGQNLIG 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023539875.11.9e-4976.00uncharacterized protein LOC111800422 [Cucurbita pepo subsp. pepo][more]
KAG7029126.14.2e-4975.33hypothetical protein SDJN02_10311, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6597681.14.2e-4975.33DNA-directed RNA polymerases II and V subunit 8A, partial [Cucurbita argyrosperm... [more]
XP_022932745.19.3e-4974.67uncharacterized protein LOC111439202 [Cucurbita moschata][more]
XP_038878178.15.1e-4771.14uncharacterized protein LOC120070324 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1F2Z44.5e-4974.67uncharacterized protein LOC111439202 OS=Cucurbita moschata OX=3662 GN=LOC1114392... [more]
A0A6J1I3X04.2e-4773.33uncharacterized protein LOC111470752 OS=Cucurbita maxima OX=3661 GN=LOC111470752... [more]
A0A5D3D2N61.6e-4669.80Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BXX11.6e-4669.80uncharacterized protein LOC103494601 OS=Cucumis melo OX=3656 GN=LOC103494601 PE=... [more]
A0A6J1CX412.7e-4668.46uncharacterized protein LOC111015217 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
AT2G43540.11.2e-3050.34unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36743OS04G0495300 PROTEINcoord: 1..58
coord: 59..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003033.1Tan0003033.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane