Tan0003010 (gene) Snake gourd v1

Overview


Name	Tan0003010
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S11, chloroplastic
Location	LG01: 45287376 .. 45287792 (-)
RNA-Seq Expression	Tan0003010
Synteny	Tan0003010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACCCCATACAAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGTGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGAGACTGTTACAGATGTACGGGGTTGGGTAATTTCTTGGTCCTCTACCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCTCTCAAACCGCAACAGGAAATGTTATTCGGACAATAATGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTAGTCTCCGAAGAGATGCAACATTAAGAGCTATTCGTAGAAGCGGTATACTCTTAAGTTTCATACGGGATATAACCCCTATGCCACATAATAGCTGTAGGCCCCCTAAAAAATGGTGTGTGTAA

mRNA sequence

ATGGCAAACCCCATACAAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGTGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGAGACTGTTACAGATGTACGGGGTTGGGTAATTTCTTGGTCCTCTACCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCTCTCAAACCGCAACAGGAAATGTTATTCGGACAATAATGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTAGTCTCCGAAGAGATGCAACATTAAGAGCTATTCGTAGAAGCGGTATACTCTTAAGTTTCATACGGGATATAACCCCTATGCCACATAATAGCTGTAGGCCCCCTAAAAAATGGTGTGTGTAA

Coding sequence (CDS)

ATGGCAAACCCCATACAAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGTGTTATTCATGTTCAAGCAAGTTTCAACAATACAATTGAGACTGTTACAGATGTACGGGGTTGGGTAATTTCTTGGTCCTCTACCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGGACACCATTTGCCTCTCAAACCGCAACAGGAAATGTTATTCGGACAATAATGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTAGTCTCCGAAGAGATGCAACATTAAGAGCTATTCGTAGAAGCGGTATACTCTTAAGTTTCATACGGGATATAACCCCTATGCCACATAATAGCTGTAGGCCCCCTAAAAAATGGTGTGTGTAA

Protein sequence

MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCGFKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIRDITPMPHNSCRPPKKWCV

Homology

[Close]

BLAST of Tan0003010 vs. ExPASy Swiss-Prot
Match: Q4VZK2 (30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=3 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.7e-62
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy Swiss-Prot
Match: Q0ZIY6 (30S ribosomal protein S11, chloroplastic OS=Vitis vinifera OX=29760 GN=rps11 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 3.1e-61
Identity = 115/135 (85.19%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRI SRKS RRIPKGVIHVQASFNNTI TVTDVRG V+SWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRIGSRKSARRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           F+GTRRGTPFA+QTA GN IRT++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSF+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy Swiss-Prot
Match: A6MM69 (30S ribosomal protein S11, chloroplastic OS=Buxus microphylla OX=153571 GN=rps11 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 6.9e-61
Identity = 114/135 (84.44%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSR+NGRI SRKS RRIPKGVIHVQASFNNTI TVTDVRG V+SWSS GTCG
Sbjct: 1   MAKPIPRIGSRKNGRIGSRKSGRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           F+GTRRGTPFA+QTA GN IRT+MDQGMQRAEVMIKGP L RDA LRAIRRSG+LLSF+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRTVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGLLLSFVR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy Swiss-Prot
Match: Q0G9S9 (30S ribosomal protein S11, chloroplastic OS=Daucus carota OX=4039 GN=rps11 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.4e-60
Identity = 113/135 (83.70%), Postives = 122/135 (90.37%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA  I RIGSR+NGRI SRK+TRRIPKGVIHVQASFNNTI TVTDVRG V+SWSS GTCG
Sbjct: 1   MAKTIPRIGSRKNGRIGSRKNTRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IRT++DQGMQRAEVMIKGP L RDA LRAIRRSGILL+F+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-60
Identity = 113/135 (83.70%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI ++GSRRNGR S+RKS RRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPKVGSRRNGRSSARKSARRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSF+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. NCBI nr
Match: YP_009753907.1 (ribosomal protein S11 [Trichosanthes lobata] >QIT05855.1 ribosomal protein S11 [Trichosanthes lobata])

HSP 1 Score: 240.7 bits (613), Expect = 7.3e-60
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR +MDQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. NCBI nr
Match: YP_004841816.1 (ribosomal protein S11 [Cucumis melo subsp. melo] >YP_009317419.1 ribosomal protein S11 [Coccinia grandis] >YP_009326022.1 ribosomal protein S11 [Citrullus lanatus] >YP_009348064.1 ribosomal protein S11 [Citrullus mucosospermus] >YP_009420827.1 ribosomal protein S11 [Citrullus colocynthis] >YP_009431589.1 ribosomal protein S11 [Citrullus amarus] >YP_009431675.1 ribosomal protein S11 [Citrullus rehmii] >YP_009456094.1 ribosomal protein S11 [Momordica charantia] >YP_009456179.1 ribosomal protein S11 [Lagenaria siceraria] >YP_009525219.1 ribosomal protein S11 [Hodgsonia macrocarpa] >YP_009560868.1 ribosomal protein S11 [Trichosanthes kirilowii] >YP_009674424.1 ribosomal protein S11 [Siraitia grosvenorii] >YP_009738234.1 ribosomal protein S11 [Siraitia siamensis] >YP_009751686.1 ribosomal protein S11 [Hodgsonia heteroclita] >YP_009751939.1 ribosomal protein S11 [Cyclanthera pedata] >YP_009752108.1 ribosomal protein S11 [Dendrosicyos socotranus] >YP_009752360.1 ribosomal protein S11 [Bryonia marmorata] >YP_009752445.1 ribosomal protein S11 [Trichosanthes tricuspidata] >YP_009752529.1 ribosomal protein S11 [Trichosanthes tubiflora] >YP_009752614.1 ribosomal protein S11 [Trichosanthes homophylla] >YP_009752699.1 ribosomal protein S11 [Ampelosycios humblotii] >YP_009752953.1 ribosomal protein S11 [Momordica sessilifolia] >YP_009753207.1 ribosomal protein S11 [Trichosanthes truncata] >YP_009753291.1 ribosomal protein S11 [Nothoalsomitra suberosa] >YP_009753653.1 ribosomal protein S11 [Trichosanthes wallichiana] >YP_009753738.1 ribosomal protein S11 [Trichosanthes nervifolia] >YP_009860106.1 ribosomal protein S11 [Cucumis melo subsp. agrestis] >YP_010131127.1 ribosomal protein S11 [Benincasa hispida] >APW82495.1 ribosomal protein S11 [Citrullus lanatus subsp. vulgaris] >ASY96591.1 ribosomal protein S11 [Cucumis melo var. conomon] >ASY96678.1 ribosomal protein S11 [Cucumis melo var. makuwa] >ASY96765.1 ribosomal protein S11 [Cucumis melo var. momordica] >ASY96852.1 ribosomal protein S11 [Cucumis melo var. dudaim] >ASY96939.1 ribosomal protein S11 [Cucumis melo var. cantalupo] >ASY97113.1 ribosomal protein S11 [Cucumis melo var. inodorus] >ASY97287.1 ribosomal protein S11 [Cucumis melo var. flexuosus] >QIT04083.1 ribosomal protein S11 [Luffa aegyptiaca] >QJD26503.1 ribosomal protein S11 [Trichosanthes kirilowii var. japonica] >QJD26677.1 ribosomal protein S11 [Trichosanthes rosthornii] >QJF46417.1 ribosomal protein S11 [Cucumis melo] >QKX48507.1 ribosomal protein S11 [Luffa acutangula] >QNM38564.1 ribosomal protein S11 [Lagenaria siceraria var. microcarpa] >QZL38714.1 ribosomal protein S11 [Citrullus ecirrhosus])

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. NCBI nr
Match: AHM89651.1 (ribosomal protein S11 [Lagenaria siceraria] >AHM89828.1 ribosomal protein S11 [Lagenaria siceraria] >AHM90123.1 ribosomal protein S11 [Lagenaria siceraria] >AHM90477.1 ribosomal protein S11 [Lagenaria siceraria] >AHM90713.1 ribosomal protein S11 [Lagenaria siceraria])

HSP 1 Score: 239.2 bits (609), Expect = 2.1e-59
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. NCBI nr
Match: YP_009752276.1 (ribosomal protein S11 [Trichosanthes baviensis] >YP_009753822.1 ribosomal protein S11 [Trichosanthes pilosa] >QIT04250.1 ribosomal protein S11 [Trichosanthes baviensis] >QIT05686.1 ribosomal protein S11 [Trichosanthes pilosa])

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-59
Identity = 118/135 (87.41%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKG+IHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. NCBI nr
Match: YP_009751771.1 (ribosomal protein S11 [Herpetospermum pedunculosum] >QHB75997.1 ribosomal protein S11 [Cucumis melo subsp. melo] >QIT04504.1 ribosomal protein S11 [Herpetospermum pedunculosum] >QJR52990.1 ribosomal protein S11 [Herpetospermum pedunculosum] >QZL38626.1 ribosomal protein S11 [Citrullus naudinianus])

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-59
Identity = 118/135 (87.41%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSF+R
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy TrEMBL
Match: A0A6H0EVI9 (30S ribosomal protein S11, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=rps11 PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.5e-60
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR +MDQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVMDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy TrEMBL
Match: A0A410HFC3 (30S ribosomal protein S11, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=rps11 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy TrEMBL
Match: A0A249RZ89 (30S ribosomal protein S11, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps11 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy TrEMBL
Match: A0A1S4EU37 (30S ribosomal protein S11, chloroplastic OS=Cucumis melo OX=3656 GN=rps11 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. ExPASy TrEMBL
Match: A0A1P8LFS2 (Ribosomal protein S11 OS=Citrullus mucosospermus OX=519315 GN=rps11 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 119/135 (88.15%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           FKGTRRGTPFA+QTA GN IR ++DQGMQRAEVMIKGP L RDA LRAIRRSGILLSFIR
Sbjct: 61  FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 223.8 bits (569), Expect = 8.6e-59
Identity = 110/135 (81.48%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 1   MANPIQRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIETVTDVRGWVISWSSTGTCG 60
           MA PI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTI TVTDVRG VISWSS GTCG
Sbjct: 1   MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFASQTATGNVIRTIMDQGMQRAEVMIKGPSLRRDATLRAIRRSGILLSFIR 120
           F+GTRRGTPFA+QTA GN IR ++DQGMQRAEV IKGP L RDA LRAIRRSGILLSF+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DITPMPHNSCRPPKK 136
           D+TPMPHN CRPPKK
Sbjct: 121 DVTPMPHNGCRPPKK 135

[Close]

BLAST of Tan0003010 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-08
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 28  GVIHVQASFNNTIETVTDVRGWVISWSSTGTCGFKGTR-RGTPFASQTATGNVIRTIMDQ 87
           GV+HV ASFN+T   VTD+ G       TG    K  R   +P+A+  A  +V +   + 
Sbjct: 28  GVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPSLRRDATLRAIRRSGILLSFIRDITPMPHNSCR 132
           G+    V +        K P     + LRA+ RSG+ +  I D+TP+P +S R
Sbjct: 88  GITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR 140

[Close]

BLAST of Tan0003010 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-08
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 28  GVIHVQASFNNTIETVTDVRGWVISWSSTGTCGFKGTR-RGTPFASQTATGNVIRTIMDQ 87
           GV+H+ ASFN+T   VTD+ G       TG    K  R   +P+A+  A  +V +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPSLRRDATLRAIRRSGILLSFIRDITPMPHNSCR 132
           G+    V +        K P     + LRA+ RSG+ +  I D+TP+P +S R
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR 140

[Close]

BLAST of Tan0003010 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-08
Identity = 37/113 (32.74%), Postives = 56/113 (49.56%), Query Frame = 0


Query: 28  GVIHVQASFNNTIETVTDVRGWVISWSSTGTCGFKGTR-RGTPFASQTATGNVIRTIMDQ 87
           GV+H+ ASFN+T   VTD+ G       TG    K  R   +P+A+  A  +V +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 88  GMQRAEVMI--------KGPSLRRDATLRAIRRSGILLSFIRDITPMPHNSCR 132
           G+    V +        K P     + LRA+ RSG+ +  I D+TP+P +S R
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTR 140

[Close]

BLAST of Tan0003010 vs. TAIR 10
Match: AT1G31817.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.1e-04
Identity = 33/117 (28.21%), Postives = 51/117 (43.59%), Query Frame = 0


Query: 29  VIHVQASFNNTIETVTDVRGWVISWSSTGTC-GFKGTRRGTPFASQTATGNVIRTIMDQG 88
           +IH++   NNT  TVTD +G V   +++G+    KG R+ T + +     N+ R     G
Sbjct: 195 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 254

Query: 89  MQRAEVMIKG-PSLRRDATLRAIRRSGILLS--------FIRDITPMPHNSCRPPKK 136
           ++   V + G     +        R G   S        +I D T   HN CR P+K
Sbjct: 255 LKSVVVKVNGFTHFGKKKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRK 311

The following BLAST results are available for this feature:

BLAST of Tan0003010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK2	4.7e-62	88.15	30S ribosomal protein S11, chloroplastic OS=Cucumis sativus OX=3659 GN=rps11 PE=...	[more]
Q0ZIY6	3.1e-61	85.19	30S ribosomal protein S11, chloroplastic OS=Vitis vinifera OX=29760 GN=rps11 PE=...	[more]
A6MM69	6.9e-61	84.44	30S ribosomal protein S11, chloroplastic OS=Buxus microphylla OX=153571 GN=rps11...	[more]
Q0G9S9	3.4e-60	83.70	30S ribosomal protein S11, chloroplastic OS=Daucus carota OX=4039 GN=rps11 PE=3 ...	[more]
A0ZZ68	4.4e-60	83.70	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]

BLAST of Tan0003010 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009753907.1	7.3e-60	88.89	ribosomal protein S11 [Trichosanthes lobata] >QIT05855.1 ribosomal protein S11 [...	[more]
YP_004841816.1	2.1e-59	88.15	ribosomal protein S11 [Cucumis melo subsp. melo] >YP_009317419.1 ribosomal prote...	[more]
AHM89651.1	2.1e-59	88.15	ribosomal protein S11 [Lagenaria siceraria] >AHM89828.1 ribosomal protein S11 [L...	[more]
YP_009752276.1	2.8e-59	87.41	ribosomal protein S11 [Trichosanthes baviensis] >YP_009753822.1 ribosomal protei...	[more]
YP_009751771.1	2.8e-59	87.41	ribosomal protein S11 [Herpetospermum pedunculosum] >QHB75997.1 ribosomal protei...	[more]

BLAST of Tan0003010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EVI9	3.5e-60	88.89	30S ribosomal protein S11, chloroplastic OS=Trichosanthes lobata OX=2613913 GN=r...	[more]
A0A410HFC3	1.0e-59	88.15	30S ribosomal protein S11, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=r...	[more]
A0A249RZ89	1.0e-59	88.15	30S ribosomal protein S11, chloroplastic OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A1S4EU37	1.0e-59	88.15	30S ribosomal protein S11, chloroplastic OS=Cucumis melo OX=3656 GN=rps11 PE=3 S...	[more]
A0A1P8LFS2	1.0e-59	88.15	Ribosomal protein S11 OS=Citrullus mucosospermus OX=519315 GN=rps11 PE=3 SV=1	[more]

BLAST of Tan0003010 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00750.1	8.6e-59	81.48	ribosomal protein S11	[more]
AT3G52580.1	6.9e-08	33.63	Ribosomal protein S11 family protein	[more]
AT2G36160.1	9.0e-08	32.74	Ribosomal protein S11 family protein	[more]
AT3G11510.1	9.0e-08	32.74	Ribosomal protein S11 family protein	[more]
AT1G31817.1	2.1e-04	28.21	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 28..135 e-value: 3.8E-43 score: 146.4
IPR001971	Ribosomal protein S11	PIRSF	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 8..137 e-value: 7.6E-40 score: 133.8
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 1..135
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 11..138 score: 27.366659
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 12..136 e-value: 1.8E-39 score: 136.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR11759:SF49	30S RIBOSOMAL PROTEIN S11, CHLOROPLASTIC	coord: 1..135
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 24..135
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 106..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003010.1	Tan0003010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome