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Tan0002974 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCCAACGCCATCAAAATCCTCTTCAAATTCCCGTCTTCAATGATTACCATTTTTCAAATTTCAAAGCCCTCTGTCTCTCTCTGTAACTCCAAACTCCCACAATCCACAGCGTCGATTCGATTTATTGATTCCATTCATTCTCTGAGCTTTTTCCATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACCCACTGCGGCGTCACTCCGAGTCCCACCTTAAGCCCCAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCTTGCGTATGCTCCTCACTCGCAATTCCGGCCGCCGCTCTCCTCGTCGCCGCGCCTTGCCGGACAAGAAGAGAGACGACCACAAGGATTTGTCCCGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCGCCGCCGTATGATGGAACCGACGGCCAGATTAACGAGACGGTTGCGGCGGCTCCGATCCGAAACGTAACTCCGGTTTGTAGGGAAAAGGAGGATCACGATGGTGAGGTTGGACCGTCCAGTTGCCATCCAGGTTCGCCTAGACCGGCCGGTTGGACCGGTTTCCGATATAAATACTTGCTCCGGAAAACCTGGCGGCCGGTGCTTGCCGGAATCCCTGAGTAATGAATGATTTTTTTTTTCCTTTTTAACCC TCCCAACGCCATCAAAATCCTCTTCAAATTCCCGTCTTCAATGATTACCATTTTTCAAATTTCAAAGCCCTCTGTCTCTCTCTGTAACTCCAAACTCCCACAATCCACAGCGTCGATTCGATTTATTGATTCCATTCATTCTCTGAGCTTTTTCCATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACCCACTGCGGCGTCACTCCGAGTCCCACCTTAAGCCCCAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCTTGCGTATGCTCCTCACTCGCAATTCCGGCCGCCGCTCTCCTCGTCGCCGCGCCTTGCCGGACAAGAAGAGAGACGACCACAAGGATTTGTCCCGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCGCCGCCGTATGATGGAACCGACGGCCAGATTAACGAGACGGTTGCGGCGGCTCCGATCCGAAACGTAACTCCGGTTTGTAGGGAAAAGGAGGATCACGATGGTGAGGTTGGACCGTCCAGTTGCCATCCAGGTTCGCCTAGACCGGCCGGTTGGACCGGTTTCCGATATAAATACTTGCTCCGGAAAACCTGGCGGCCGGTGCTTGCCGGAATCCCTGAGTAATGAATGATTTTTTTTTTCCTTTTTAACCC ATGGCGTCGCTTCTCAAATTCAAGCTCCTTCCGACCCACTGCGGCGTCACTCCGAGTCCCACCTTAAGCCCCAGGACCAGCCCTCTCGTTCACCTCCGCCGCCGCAAAACCACCTTGCGTATGCTCCTCACTCGCAATTCCGGCCGCCGCTCTCCTCGTCGCCGCGCCTTGCCGGACAAGAAGAGAGACGACCACAAGGATTTGTCCCGGAGCAACACGTTGAAGGATTTGTTCGTGTCGTCGCCGCCGTATGATGGAACCGACGGCCAGATTAACGAGACGGTTGCGGCGGCTCCGATCCGAAACGTAACTCCGGTTTGTAGGGAAAAGGAGGATCACGATGGTGAGGTTGGACCGTCCAGTTGCCATCCAGGTTCGCCTAGACCGGCCGGTTGGACCGGTTTCCGATATAAATACTTGCTCCGGAAAACCTGGCGGCCGGTGCTTGCCGGAATCCCTGAGTAA MASLLKFKLLPTHCGVTPSPTLSPRTSPLVHLRRRKTTLRMLLTRNSGRRSPRRRALPDKKRDDHKDLSRSNTLKDLFVSSPPYDGTDGQINETVAAAPIRNVTPVCREKEDHDGEVGPSSCHPGSPRPAGWTGFRYKYLLRKTWRPVLAGIPE Homology
BLAST of Tan0002974 vs. NCBI nr
Match: KAG7032525.1 (hypothetical protein SDJN02_06574, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 275.4 bits (703), Expect = 3.0e-70 Identity = 138/154 (89.61%), Postives = 144/154 (93.51%), Query Frame = 0
BLAST of Tan0002974 vs. NCBI nr
Match: KAG6601820.1 (hypothetical protein SDJN03_07053, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 273.1 bits (697), Expect = 1.5e-69 Identity = 137/154 (88.96%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Tan0002974 vs. NCBI nr
Match: XP_022963063.1 (uncharacterized protein LOC111463373 [Cucurbita moschata]) HSP 1 Score: 272.7 bits (696), Expect = 1.9e-69 Identity = 137/154 (88.96%), Postives = 144/154 (93.51%), Query Frame = 0
BLAST of Tan0002974 vs. NCBI nr
Match: XP_023513243.1 (uncharacterized protein LOC111777755 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 270.4 bits (690), Expect = 9.6e-69 Identity = 136/154 (88.31%), Postives = 143/154 (92.86%), Query Frame = 0
BLAST of Tan0002974 vs. NCBI nr
Match: XP_022971824.1 (uncharacterized protein LOC111470493 [Cucurbita maxima]) HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66 Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0
BLAST of Tan0002974 vs. ExPASy TrEMBL
Match: A0A6J1HGM7 (uncharacterized protein LOC111463373 OS=Cucurbita moschata OX=3662 GN=LOC111463373 PE=4 SV=1) HSP 1 Score: 272.7 bits (696), Expect = 9.4e-70 Identity = 137/154 (88.96%), Postives = 144/154 (93.51%), Query Frame = 0
BLAST of Tan0002974 vs. ExPASy TrEMBL
Match: A0A6J1I9M9 (uncharacterized protein LOC111470493 OS=Cucurbita maxima OX=3661 GN=LOC111470493 PE=4 SV=1) HSP 1 Score: 262.7 bits (670), Expect = 9.7e-67 Identity = 134/154 (87.01%), Postives = 140/154 (90.91%), Query Frame = 0
BLAST of Tan0002974 vs. ExPASy TrEMBL
Match: A0A6J1DFV6 (uncharacterized protein LOC111020064 OS=Momordica charantia OX=3673 GN=LOC111020064 PE=4 SV=1) HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61 Identity = 129/155 (83.23%), Postives = 134/155 (86.45%), Query Frame = 0
BLAST of Tan0002974 vs. ExPASy TrEMBL
Match: A0A6J1K1U6 (uncharacterized protein LOC111489857 OS=Cucurbita maxima OX=3661 GN=LOC111489857 PE=4 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 6.1e-61 Identity = 125/155 (80.65%), Postives = 133/155 (85.81%), Query Frame = 0
BLAST of Tan0002974 vs. ExPASy TrEMBL
Match: A0A6J1FLF8 (uncharacterized protein LOC111445302 OS=Cucurbita moschata OX=3662 GN=LOC111445302 PE=4 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 3.0e-60 Identity = 122/154 (79.22%), Postives = 131/154 (85.06%), Query Frame = 0
BLAST of Tan0002974 vs. TAIR 10
Match: AT1G66890.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S ribosomal protein-related (TAIR:AT5G16200.1); Has 36 Blast hits to 36 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14 Identity = 69/166 (41.57%), Postives = 85/166 (51.20%), Query Frame = 0
BLAST of Tan0002974 vs. TAIR 10
Match: AT1G68430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 75.1 bits (183), Expect = 5.5e-14 Identity = 64/164 (39.02%), Postives = 79/164 (48.17%), Query Frame = 0
BLAST of Tan0002974 vs. TAIR 10
Match: AT5G16200.1 (50S ribosomal protein-related ) HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09 Identity = 66/174 (37.93%), Postives = 86/174 (49.43%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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