Tan0002912 (gene) Snake gourd v1

Overview
NameTan0002912
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionnucleolar protein 10
LocationLG03: 52575677 .. 52578665 (+)
RNA-Seq ExpressionTan0002912
SyntenyTan0002912
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGCCCCTCATTGCTTATTGCTGCAGACATCAACTAATCAGAATTCATAAACCACTTAAAAACGGGGGAAGAACAAAGCGTAAAAAGGTAATTTTATTGCAACCCATCAAATTTCTCTTCAGATTTTATTACATTTTTATCTCTTGTATAAAAAGGTAATTTTATGATTTGTAGCGTAGCCTGTTAAATTTATGGTTTTGTCTGATTAGGTGTAAATTTATGGTTTTGTTTATAGTATAATTTAAAGTATTAAATAATTTGAAATGTTTTCTGTGAGTACACAAGAAATGTAGCTTAATTTTGATAGATTGTTGGGTTTGAATTAGGGTACTTTGAGAAATAATTGTTATGTTGATTGAGAATATTTTAATGATGAGCTAGTTACTTTTTCTTATGTTGGCATGATTTTGCAGGCAAAATCACTGGCAGATCCTTTTGCATATGATGCTTACATAGAACAAAGGAAAAAAAGAGAAACTAGATGAGGAGTGTGCCAACCGAATTACGGTAAACCACTTTTAGTCCCAAAAATTTATAATATTTGATTACCTAAGTTCTGATCAATTTGTTAATATTCTTGTATGTTGCTATGATGCTAATTTTATTTCTTATAAGGAACTCCAGGATTTAAGATACGGAGGATTTCAATTGTATGAAAAATGCATTTGGAGAATGCAACTTCTAAATTTCATTTGGTCCTCATGTGTACAAATTCTCTGTTTCACTTGCCATTGCTTTTCATTATTTCCTTTTTCTTTTTTCCTGATGAAAAATTAAAATTATTCATTTCTCACAAAGAACAAGAATGCAGAAGGGTAGTTGAGGCCAATGGAAGTTTGTAAATAGGACTTCCAATTGGTATTAATAAGATACAAATTGTAATTACCAAAGAATTTATGATAAACTTCCATGCAGTCTATTGGAGCTTTCTTTCCAAATATTCCAATTATAAATATGCTTGATGTGTTAATGAGTTTTTTTTTCTTTTTTTGGTGGGGGGATGCTTCCATGTACTTGGAATTCGGGAGTGGGTTGGGTGCAGTCTGTATGAGATCTTTATGACTTGTCTTTATATATATATATTTTAATGTTCATCAAGCTACAAGGCTTGTATTTTTATCTACGCTTTTTCTCCAGGTGAAAAGGAAGTTACCCAAAGTCAACAGGCGCCTTGCAAATCAAATCCTTGAAGAGGAAGATGCAAAGACGGAAAAGAAGGATGAAGATGTCAATAAGACCAATAAGGCATCAAAGAAGAAGAAAGGGATCAATAGCGAAATCTTTCAAGATGAACGTTTTGCGAATATGTTTAAAAATGAGGTATGACTGGATTGTCAGACACCCCTTGTTGTCTTTTTTCTCCACATTTCTGTTAGTTATTTGCAATCCATCTAAAAAAATGGAGGAAGAAAAAAAAAATCAAGGCTTCGTCTACAAGATGTCTAAGTAAAGATCACATTACATATGCAAATATTTATTTCGAGGAATGGGGATGCTTGAAGATGTTTCTTAACAAAATAAGTCTCAAGAAAAGGAAACTTTTGGCCTGGGGTGTTCACTTGAATTTCACTCTCATTTAAAAGCAGCTTCCTTGGTTTATTCACCACCATTCCCTTGTCTTCTAGCCCTCTTCAACAACATCCACTTGAAAATCGAGCTTTATCACATGGTTTTCGAGCAGACTTCGAATCCCAGCAACCCAAAATGGAAAATGTGTTGAAACAATCTGAACCACTGTGCTTAACTAGCGGAAGACAAGGTTTGAGAGAATGGTTTGTAATTTAAATTGGTTCTCTCCCTTCTTAGTGGGTGAAATTTAAGTCCATTTGGTTTTTAACAAACCCAAAAATTGGGTGAATTTAGAAGAAGCATGGTAAGTTTATACTTCATATGCGTCCAATGGAGGACAAAATGATTATTGAGACTTGTTTTAACTCATGAACAACTTATTTCTCCATTAATGTGTTTGAAAATATTGCTTTTTGGTTCTTTGAATTCTATCAACGTGTTTGAATTTGACTCCGTTAATGTGTTTGAATTTTACACCAAATTCGCTTATCTCTTGGAGAAATTTGATTCCAATGTCTCTGAGAGAAGCTTTCACCATGGATGTTTCATTTAGAGGCTGAGGGAAAAAGTTGCTTCTCTTTCTAAGTAAGCTACTCATTCAATCCATTTTCATTAGTATTTTTGTTGCTATAGCTATATATATTAAGTCATGGACATAGCATGTGTTGTTCGCTAATCATAGAAATGATGCCTTTTATATGATTGAATTGAAGTTTAGAGTTTTTAAGGACATAAGTCTCCTCCATAAAGTTTTTTTTTTTTTTTTTAAAAAAAGTCCCCTCAATAAACTATGTTAGAGGTTATAGGCTTCATTTGTGTATTTGGAGTGGACACAATTTTGAAATTATAATTATTGTGAATCAAATTATCTTTAAATAATTTTAAATTAAAAGTAAAATCCAAACATTATAATTTTCAAGATATATTATAATTTGAGGTAATTGAAATAGAATGATAGAATGATCTTGAGACAATTTTAAGCATCTTATTTAATTTTCTGAATTGGAATGGAATAATGTTTTCAATGGTTTGTTTTTCTGATTATTGTTTGTGATTTGTAGAAGGGAAAGGCCATGTTCTTGGATTTGTGTTGCAAGGTGTAATTTGTTTTTAGTTTCAAACCTTTGTTTTGGGCTTCTCAGAAGAACTAACGAATTGTTTTAATTTGTTCTGAATAAAGGCATTCTTTTTCGCTTTTTCGCCATTGTTTGCTGGAGAGTCTGTGTTTCAGGTTAACTTTGAATGGGAAGATGGCTTTGGATATCCAGGAGCTTTCTATAAAGAAATGGTCATACGAGTGAGCTTTTTCTCAAATCTCTCACTCTCGAAAATGTTGCTAACTATGGAAAGGTTCATTTTGATTGCAACTGGTGGGTCTACCATCAAGGAAGAAACAAATAAATACATGTTATGA

mRNA sequence

ATGGCTCTGCCCCTCATTGCTTATTGCTGCAGACATCAACTAATCAGAATTCATAAACCACTTAAAAACGGGGGAAGAACAAAGCGTAAAAAGGTGAAAAGGAAGTTACCCAAAGTCAACAGGCGCCTTGCAAATCAAATCCTTGAAGAGGAAGATGCAAAGACGGAAAAGAAGGATGAAGATGTCAATAAGACCAATAAGGCATCAAAGAAGAAGAAAGGGATCAATAGCGAAATCTTTCAAGATGAACGTTTTGCGAATATGTTTAAAAATGAGGTTAACTTTGAATGGGAAGATGGCTTTGGATATCCAGGAGCTTTCTATAAAGAAATGGTCATACGAGTGAGCTTTTTCTCAAATCTCTCACTCTCGAAAATGTTGCTAACTATGGAAAGGTTCATTTTGATTGCAACTGGTGGGTCTACCATCAAGGAAGAAACAAATAAATACATGTTATGA

Coding sequence (CDS)

ATGGCTCTGCCCCTCATTGCTTATTGCTGCAGACATCAACTAATCAGAATTCATAAACCACTTAAAAACGGGGGAAGAACAAAGCGTAAAAAGGTGAAAAGGAAGTTACCCAAAGTCAACAGGCGCCTTGCAAATCAAATCCTTGAAGAGGAAGATGCAAAGACGGAAAAGAAGGATGAAGATGTCAATAAGACCAATAAGGCATCAAAGAAGAAGAAAGGGATCAATAGCGAAATCTTTCAAGATGAACGTTTTGCGAATATGTTTAAAAATGAGGTTAACTTTGAATGGGAAGATGGCTTTGGATATCCAGGAGCTTTCTATAAAGAAATGGTCATACGAGTGAGCTTTTTCTCAAATCTCTCACTCTCGAAAATGTTGCTAACTATGGAAAGGTTCATTTTGATTGCAACTGGTGGGTCTACCATCAAGGAAGAAACAAATAAATACATGTTATGA

Protein sequence

MALPLIAYCCRHQLIRIHKPLKNGGRTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERFANMFKNEVNFEWEDGFGYPGAFYKEMVIRVSFFSNLSLSKMLLTMERFILIATGGSTIKEETNKYML
Homology
[Close]
BLAST of Tan0002912 vs. NCBI nr
Match: XP_008455234.1 (PREDICTED: nucleolar protein 10 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERF 85
           R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+ED+NKT KASKKKKG+NSEIFQDERF
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETEKKEEDINKTKKASKKKKGLNSEIFQDERF 505

Query: 86  ANMFKNEVNFEWED 100
           ANMFKNE NFE ++
Sbjct: 506 ANMFKNE-NFEIDE 518

[Close]
BLAST of Tan0002912 vs. NCBI nr
Match: XP_023540093.1 (nucleolar protein 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.1 bits (253), Expect = 4.5e-18
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDER 85
           R  R  VKRKLPKVNRRLANQILEEE+A+TEKKD EDVNKT KASKKKKG++SEIFQDER
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETEKKDEEDVNKTKKASKKKKGLSSEIFQDER 505

Query: 86  FANMFKNEVNFE 97
           FANMFKNE NFE
Sbjct: 506 FANMFKNE-NFE 516

[Close]
BLAST of Tan0002912 vs. NCBI nr
Match: XP_004137047.1 (nucleolar protein 10 [Cucumis sativus] >KGN43690.1 hypothetical protein Csa_017139 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 5.8e-18
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERF 85
           R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+EDVNKT KASKKKK ++SEIFQDERF
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETEKKEEDVNKTKKASKKKKALSSEIFQDERF 505

Query: 86  ANMFKNEVNFEWED 100
            NMFKNE NFE ++
Sbjct: 506 TNMFKNE-NFEIDE 518

[Close]
BLAST of Tan0002912 vs. NCBI nr
Match: XP_022933434.1 (nucleolar protein 10 [Cucurbita moschata])

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-18
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDER 85
           R  R  VKRKLPKVNRRLANQILEEE+A TEKKD EDVNKT KASKKKKG++SEIFQDER
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAGTEKKDEEDVNKTKKASKKKKGLSSEIFQDER 505

Query: 86  FANMFKNEVNFE 97
           FANMFKNE NFE
Sbjct: 506 FANMFKNE-NFE 516

[Close]
BLAST of Tan0002912 vs. NCBI nr
Match: KAG7027704.1 (Nucleolar protein 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 9.9e-18
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDER 85
           R  R  VKRKLPKVNRRLANQILEEE+A+T+KKD EDVNKT KASKKKKG++SEIFQDER
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETDKKDEEDVNKTKKASKKKKGLSSEIFQDER 505

Query: 86  FANMFKNEVNFE 97
           FANMFKNE NFE
Sbjct: 506 FANMFKNE-NFE 516

[Close]
BLAST of Tan0002912 vs. ExPASy TrEMBL
Match: A0A1S3C010 (nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103495447 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.7e-20
Identity = 60/74 (81.08%), Postives = 67/74 (90.54%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERF 85
           R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+ED+NKT KASKKKKG+NSEIFQDERF
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETEKKEEDINKTKKASKKKKGLNSEIFQDERF 505

Query: 86  ANMFKNEVNFEWED 100
           ANMFKNE NFE ++
Sbjct: 506 ANMFKNE-NFEIDE 518

[Close]
BLAST of Tan0002912 vs. ExPASy TrEMBL
Match: A0A0A0K1Z0 (NUC153 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G058640 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.8e-18
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGINSEIFQDERF 85
           R  R  VKRKLPKVNRRLANQILEEE+A+TEKK+EDVNKT KASKKKK ++SEIFQDERF
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETEKKEEDVNKTKKASKKKKALSSEIFQDERF 505

Query: 86  ANMFKNEVNFEWED 100
            NMFKNE NFE ++
Sbjct: 506 TNMFKNE-NFEIDE 518

[Close]
BLAST of Tan0002912 vs. ExPASy TrEMBL
Match: A0A6J1EZS1 (nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111440847 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.8e-18
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDER 85
           R  R  VKRKLPKVNRRLANQILEEE+A TEKKD EDVNKT KASKKKKG++SEIFQDER
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAGTEKKDEEDVNKTKKASKKKKGLSSEIFQDER 505

Query: 86  FANMFKNEVNFE 97
           FANMFKNE NFE
Sbjct: 506 FANMFKNE-NFE 516

[Close]
BLAST of Tan0002912 vs. ExPASy TrEMBL
Match: A0A6J1I2M0 (nucleolar protein 10 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469983 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 8.2e-18
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKD-EDVNKTNKASKKKKGINSEIFQDER 85
           R  R  VKRKLPKVNRRLANQILEEE+A+TEKKD EDVNK  KASKKKKG++SEIFQDER
Sbjct: 446 RANRITVKRKLPKVNRRLANQILEEEEAETEKKDEEDVNKAKKASKKKKGLSSEIFQDER 505

Query: 86  FANMFKNEVNFE 97
           FANMFKNE NFE
Sbjct: 506 FANMFKNE-NFE 516

[Close]
BLAST of Tan0002912 vs. ExPASy TrEMBL
Match: A0A6J1DWS5 (nucleolar protein 10 OS=Momordica charantia OX=3673 GN=LOC111025246 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 57/82 (69.51%), Postives = 65/82 (79.27%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDE--------DVNKTNKASKKKKGINS 85
           R  R  +KRKLPKVNRRLANQILE+E+A+ EKKDE        DVNKT KASKKKKG +S
Sbjct: 446 RANRITMKRKLPKVNRRLANQILEDEEAEKEKKDEDTEKEKKDDVNKTKKASKKKKGFSS 505

Query: 86  EIFQDERFANMFKNEVNFEWED 100
           EIFQDERF+NMFKNE NFE ++
Sbjct: 506 EIFQDERFSNMFKNE-NFEIDE 526

[Close]
BLAST of Tan0002912 vs. TAIR 10
Match: AT3G56990.1 (embryo sac development arrest 7 )

HSP 1 Score: 42.0 bits (97), Expect = 5.1e-04
Identity = 32/67 (47.76%), Postives = 40/67 (59.70%), Query Frame = 0 

Query: 26  RTKRKKVKRKLPKVNRRLANQILEEEDAKTEKKDEDVNKTNKASKKKKGI-NSEIFQDER 85
           RT+R   KR+LPKVNR LA ++  +E  +  K  ED   T K  KKKK I   E F D R
Sbjct: 444 RTQRITKKRRLPKVNRDLAARLHGDESEEENKTAEDGEATKKVLKKKKPILTDEHFVDGR 503

Query: 86  FANMFKN 92
           F +MF+N
Sbjct: 504 FGSMFQN 510

The following BLAST results are available for this feature:
BLAST of Tan0002912 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002912 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455234.11.4e-1981.08PREDICTED: nucleolar protein 10 [Cucumis melo][more]
XP_023540093.14.5e-1884.72nucleolar protein 10 [Cucurbita pepo subsp. pepo][more]
XP_004137047.15.8e-1878.38nucleolar protein 10 [Cucumis sativus] >KGN43690.1 hypothetical protein Csa_0171... [more]
XP_022933434.19.9e-1884.72nucleolar protein 10 [Cucurbita moschata][more]
KAG7027704.19.9e-1883.33Nucleolar protein 10 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Tan0002912 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C0106.7e-2081.08nucleolar protein 10 OS=Cucumis melo OX=3656 GN=LOC103495447 PE=3 SV=1[more]
A0A0A0K1Z02.8e-1878.38NUC153 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G058640 PE=3... [more]
A0A6J1EZS14.8e-1884.72nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111440847 PE=3 SV=1[more]
A0A6J1I2M08.2e-1883.33nucleolar protein 10 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469983 PE=3... [more]
A0A6J1DWS51.0e-1569.51nucleolar protein 10 OS=Momordica charantia OX=3673 GN=LOC111025246 PE=3 SV=1[more]
BLAST of Tan0002912 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56990.15.1e-0447.76embryo sac development arrest 7 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 40..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002912.1Tan0002912.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process GO:0009561 megagametogenesis
cellular_component GO:0005730 nucleolus
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0016853 isomerase activity