Tan0002887 (gene) Snake gourd v1

Overview


Name	Tan0002887
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG03: 37633974 .. 37634910 (-)
RNA-Seq Expression	Tan0002887
Synteny	Tan0002887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGGTTGATGAACGAGTTGAGAAAGGGAAGAATGTAAGTTTGGAGTTTGATGAAGAAGAAGGTACTGGAAGACTATAGAGAAAAGGTAAATGAGATAACTAACCTGATGACTCTTTTTAATGAATTCCAAGATATTGTTATAAAGAGTTTCAGTGTGTTGGAGAACAAGATAGACTCCGCATATGTTGAACTAAAATTGATGAAGTTTAAAGCTAGAAGTGTTGATGTTGTATCTGGAAATGAGTTCACAATGGTAAAGATGGTAATGGAGGAGATGGAGGAAATGACAATAATGGATCAAATAAAGATAATGAAAAAGGTATTGAAGGGGATAATGATGATATTGGAAAGGAAGGAGAATGCAGAGAGAAAGATAATGATGGTGTTGGAGGAGAGGAGGGACGAAATAGAGGGTCGTTGAAAGATGAGCTCATGAATACTCAAATGCTTAAGGAAATTGAATCGATAGAGAAGAAGATGAAAGCTAAGAAGGTATGTATTCTGATTAAATATATTGTCTGATTATATATGACGTAAAACCTATATATATATATGGTAATTAATATAATGATATGCTTGTAGGTAGAATATGTACAAGACAAAAGTCCGATAGGTTCAGCAAGATGTATAATGGTGCGGTACGAATCATTCTATAGTTTATTATAATTGGTGTTGATATGTAGAGATTGTAATATTGACTTTTTTATATTTGAAGCTGAGGGGCAAGGGAGTGTTTTCAACAAAACAAGAATCTATTGGTAATAGGATTAATCGGAGGAAGAGTGGGTGTTGCATTATCGTGCCATCAAAATTACTGCGATCACCATTCACTTTGAAGTTTGGTTTGACCAAAGACTTAAAGAAGAAAGACAAAAAAATCACGACGGAAGATATTGATGTTCCCAGTTTTAAGATAATGTCTCAAATATAG

mRNA sequence

ATGACTGTGGTTGATGAACGAGTTGAGAAAGGGAAGAATGTAAGTTTGGAGTTTGATGAAGAAGAAGTTCACAATGGTAAAGATGGTAATGGAGGAGATGGAGGAAATGACAATAATGGATCAAATAAAGATAATGAAAAAGGTATTGAAGGGGATAATGATGATATTGGAAAGGAAGGAGAATGCAGAGAGAAAGATAATGATGGTGTTGGAGGAGAGGAGGGACGAAATAGAGGGTCGTTGAAAGATGAGCTCATGAATACTCAAATGCTTAAGGAAATTGAATCGATAGAGAAGAAGATGAAAGCTAAGAAGCTGAGGGGCAAGGGAGTGTTTTCAACAAAACAAGAATCTATTGGTAATAGGATTAATCGGAGGAAGAGTGGGTGTTGCATTATCGTGCCATCAAAATTACTGCGATCACCATTCACTTTGAAGTTTGGTTTGACCAAAGACTTAAAGAAGAAAGACAAAAAAATCACGACGGAAGATATTGATGTTCCCAGTTTTAAGATAATGTCTCAAATATAG

Coding sequence (CDS)

ATGACTGTGGTTGATGAACGAGTTGAGAAAGGGAAGAATGTAAGTTTGGAGTTTGATGAAGAAGAAGTTCACAATGGTAAAGATGGTAATGGAGGAGATGGAGGAAATGACAATAATGGATCAAATAAAGATAATGAAAAAGGTATTGAAGGGGATAATGATGATATTGGAAAGGAAGGAGAATGCAGAGAGAAAGATAATGATGGTGTTGGAGGAGAGGAGGGACGAAATAGAGGGTCGTTGAAAGATGAGCTCATGAATACTCAAATGCTTAAGGAAATTGAATCGATAGAGAAGAAGATGAAAGCTAAGAAGCTGAGGGGCAAGGGAGTGTTTTCAACAAAACAAGAATCTATTGGTAATAGGATTAATCGGAGGAAGAGTGGGTGTTGCATTATCGTGCCATCAAAATTACTGCGATCACCATTCACTTTGAAGTTTGGTTTGACCAAAGACTTAAAGAAGAAAGACAAAAAAATCACGACGGAAGATATTGATGTTCCCAGTTTTAAGATAATGTCTCAAATATAG

Protein sequence

MTVVDERVEKGKNVSLEFDEEEVHNGKDGNGGDGGNDNNGSNKDNEKGIEGDNDDIGKEGECREKDNDGVGGEEGRNRGSLKDELMNTQMLKEIESIEKKMKAKKLRGKGVFSTKQESIGNRINRRKSGCCIIVPSKLLRSPFTLKFGLTKDLKKKDKKITTEDIDVPSFKIMSQI

Homology

The following BLAST results are available for this feature:

BLAST of Tan0002887 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002887 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002887 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002887 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002887.1	Tan0002887.1	mRNA