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Tan0002872 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCGTACATGGACGGTAGTTGGAGTCGACAACTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAATAACTTGATGCACTATCTCCCTTCAACGCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCTCGTAGGAACTACGAGATCACCCCAAGGACGCCTTTGGTATCCAGGGGTCGCGGACCGACCAAACTAG ATGGATCGTACATGGACGGTAGTTGGAGTCGACAACTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCTCGTAGGAACTACGAGATCACCCCAAGGACGCCTTTGGTATCCAGGGGTCGCGGACCGACCAAACTAG ATGGATCGTACATGGACGGTAGTTGGAGTCGACAACTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCTCGTAGGAACTACGAGATCACCCCAAGGACGCCTTTGGTATCCAGGGGTCGCGGACCGACCAAACTAG MDRTWTVVGVDNSLRVPSSGIPGEEDQEGKSMDRPHRLHLVGTTRSPQGRLWYPGVADRPN Homology
BLAST of Tan0002872 vs. NCBI nr
Match: QHE65624.1 (ORF43m [Nitraria roborowskii] >QHE65704.1 ORF43m [Nitraria sibirica] >QHE65784.1 ORF43m [Nitraria tangutorum] >QHE65637.1 ORF43m [Nitraria roborowskii] >QHE65717.1 ORF43m [Nitraria sibirica]) HSP 1 Score: 107.1 bits (266), Expect = 5.6e-20 Identity = 56/82 (68.29%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. NCBI nr
Match: ERM97427.1 (hypothetical protein AMTR_s02909p00006680 [Amborella trichopoda]) HSP 1 Score: 105.1 bits (261), Expect = 2.1e-19 Identity = 55/82 (67.07%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. NCBI nr
Match: KAF4360023.1 (hypothetical protein F8388_004530 [Cannabis sativa]) HSP 1 Score: 100.5 bits (249), Expect = 5.2e-18 Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. NCBI nr
Match: KAB8477470.1 (hypothetical protein FH972_025336 [Carpinus fangiana]) HSP 1 Score: 99.8 bits (247), Expect = 8.9e-18 Identity = 53/82 (64.63%), Postives = 54/82 (65.85%), Query Frame = 0
BLAST of Tan0002872 vs. NCBI nr
Match: YP_009758287.1 (hypothetical protein [Rubus amabilis] >YP_009758301.1 ORF43m [Rubus amabilis] >QIN90067.1 hypothetical protein [Rubus amabilis] >QIN90081.1 ORF43m [Rubus amabilis]) HSP 1 Score: 99.8 bits (247), Expect = 8.9e-18 Identity = 53/82 (64.63%), Postives = 54/82 (65.85%), Query Frame = 0
BLAST of Tan0002872 vs. ExPASy TrEMBL
Match: A0A6B9QFK3 (ORF43m OS=Nitraria tangutorum OX=357929 GN=trnA-UGC PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.7e-20 Identity = 56/82 (68.29%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. ExPASy TrEMBL
Match: A0A6B9QF48 (ORF43m OS=Nitraria roborowskii OX=357932 GN=trnA-UGC PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.7e-20 Identity = 56/82 (68.29%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. ExPASy TrEMBL
Match: A0A6B9QGL2 (ORF43m OS=Nitraria sibirica OX=357931 GN=trnA-UGC PE=4 SV=1) HSP 1 Score: 107.1 bits (266), Expect = 2.7e-20 Identity = 56/82 (68.29%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. ExPASy TrEMBL
Match: U5CKY2 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02909p00006680 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.0e-19 Identity = 55/82 (67.07%), Postives = 56/82 (68.29%), Query Frame = 0
BLAST of Tan0002872 vs. ExPASy TrEMBL
Match: A0A7J6ENP9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004530 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 2.5e-18 Identity = 51/82 (62.20%), Postives = 56/82 (68.29%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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