Tan0002833 (gene) Snake gourd v1

Overview


Name	Tan0002833
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Plant transposase
Location	LG03: 32385804 .. 32386808 (+)
RNA-Seq Expression	Tan0002833
Synteny	Tan0002833

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAATGTCTTAGCTTCGATTCAAATGCTCCACGAAAACGACAATCTAAGCGATTGAAAAACTAACAAGTAAAGAAGATGATGATGATGGAACACTGAATGATAAGGAAGGAGATCACGTTACTGATAAGTTGTGTGTTGACCAATCTCAAGATTACTCACCAGCTGGAGAAGAGTCATTGAATGATGCAGAGAATTGTGATACTACTCACATGACTCAAAGGTTAGATTCTATCGGTCAAGCTCCACTAAATGTAGAAAGATCTTCGGGTGTAGAAGTCAATATTGATGCATCTGAACAAATTTTAAAACATCCATCCAAGAAATGTAGAGGAGCTACAAAAATGAAAGCTATTGCAGTTGGGGAACATAGAAAAATAGATATAACATTCAATGAGTATGGACAACCGATTGGAGAGGTTTCAGTTGAGATGTCTTCATTTTTGGACTCACTCGTGAGAGAGGTAGTGCCTGTGACTTTACAAGATTGGAGGAAATTGTCTACACGATTGAAGTAAATTTTATGGACTTCAATTCAAGTACGTATTTCATATTTTGATCGATTGTAATATTTTTTTAATCTTATATCTTCTGGTATAAACTTTCATTTGTTTGAAATATTATTGTAGTCAAGATATAAGATGAAGGAAGATTGGAAAAGAAAGTATATTTTTCAAAAGATGGGTAGATTATGGAGGGCAGGTAAATCTCGAATTGTGTCACAAATTAAAAATGCCTCCAATGATGAGGAGCTTGTTAAATTGAAGCCAACCAATATACAATCTATGCATTATTGGATGGACTTTGTGAAAGAAAAGAAGAGCGCAAGGTTCAAGGTAATCTCATGTCATTCACTTTAACCACATACTATTATAACTAAAGTGTCTATTATTCAAATTTTGTTTCACATGTATATTTGATTAGACAAAAAGTGAAAAATTCAAATCCATGAAGAATAAGCAACTTCCACATACATGTAACCGTAAGGGCTATGCTCGATTGGCC

mRNA sequence

AGTAAATGTCTTAGCTTCGATTCAAATGCTCCACGAAAACGACAATCTAAGCGATTGAAAAACTAACAAGTAAAGAAGATGATGATGATGGAACACTGAATGATAAGGAAGGAGATCACGTTACTGATAAGTTGTGTGTTGACCAATCTCAAGATTACTCACCAGCTGGAGAAGAGTCATTGAATGATGCAGAGAATTGTGATACTACTCACATGACTCAAAGGTTAGATTCTATCGGTCAAGCTCCACTAAATGTAGAAAGATCTTCGGGTGTAGAAGTCAATATTGATGCATCTGAACAAATTTTAAAACATCCATCCAAGAAATGTAGAGGAGCTACAAAAATGAAAGCTATTGCAGTTGGGGAACATAGAAAAATAGATATAACATTCAATGAGTATGGACAACCGATTGGAGAGGTTTCAGTTGAGATGTCTTCATTTTTGGACTCACTCGTGAGAGAGGTAGTGCCTGTGACTTTACAAGATTGGAGGAAATTGTCTACACGATTGAAGTAAATTTTATGGACTTCAATTCAATCAAGATATAAGATGAAGGAAGATTGGAAAAGAAAGTATATTTTTCAAAAGATGGGTAGATTATGGAGGGCAGGTAAATCTCGAATTGTGTCACAAATTAAAAATGCCTCCAATGATGAGGAGCTTGTTAAATTGAAGCCAACCAATATACAATCTATGCATTATTGGATGGACTTTGTGAAAGAAAAGAAGAGCGCAAGGTTCAAGGTAATCTCATGTCATTCACTTTAACCACATACTATTATAACTAAAGTGTCTATTATTCAAATTTTGTTTCACATGTATATTTGATTAGACAAAAAGTGAAAAATTCAAATCCATGAAGAATAAGCAACTTCCACATACATGTAACCGTAAGGGCTATGCTCGATTGGCC

Coding sequence (CDS)

ATGACTCAAAGGTTAGATTCTATCGGTCAAGCTCCACTAAATGTAGAAAGATCTTCGGGTGTAGAAGTCAATATTGATGCATCTGAACAAATTTTAAAACATCCATCCAAGAAATGTAGAGGAGCTACAAAAATGAAAGCTATTGCAGTTGGGGAACATAGAAAAATAGATATAACATTCAATGAGTATGGACAACCGATTGGAGAGGTTTCAGTTGAGATGTCTTCATTTTTGGACTCACTCGTGAGAGAGGTAGTGCCTGTGACTTTACAAGATTGGAGGAAATTGTCTACACGATTGAAGTAA

Protein sequence

MTQRLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNEYGQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK

Homology

[Close]

BLAST of Tan0002833 vs. NCBI nr
Match: XP_038904085.1 (uncharacterized protein LOC120090469 isoform X1 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 3   QRLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNE 62
           Q+L S GQ    ++RS  V  +I+ASE  ++   KKCRG TKM   A+ E  K+DITFNE
Sbjct: 117 QKLASRGQVSPILDRSQNVGEHINASELTIQQFPKKCRGPTKMNTNAIEECNKVDITFNE 176

Query: 63  YGQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           +GQPIGE S+ +SSFL  LVRE VPVTL DWRKLST  K
Sbjct: 177 FGQPIGEASIGLSSFLGLLVREEVPVTLSDWRKLSTSSK 215

[Close]

BLAST of Tan0002833 vs. NCBI nr
Match: XP_038904090.1 (uncharacterized protein LOC120090469 isoform X5 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 3   QRLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNE 62
           Q+L S GQ    ++RS  V  +I+ASE  ++   KKCRG TKM   A+ E  K+DITFNE
Sbjct: 117 QKLASRGQVSPILDRSQNVGEHINASELTIQQFPKKCRGPTKMNTNAIEECNKVDITFNE 176

Query: 63  YGQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           +GQPIGE S+ +SSFL  LVRE VPVTL DWRKLST  K
Sbjct: 177 FGQPIGEASIGLSSFLGLLVREEVPVTLSDWRKLSTSSK 215

[Close]

BLAST of Tan0002833 vs. NCBI nr
Match: XP_038904089.1 (uncharacterized protein LOC120090469 isoform X4 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 3   QRLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNE 62
           Q+L S GQ    ++RS  V  +I+ASE  ++   KKCRG TKM   A+ E  K+DITFNE
Sbjct: 117 QKLASRGQVSPILDRSQNVGEHINASELTIQQFPKKCRGPTKMNTNAIEECNKVDITFNE 176

Query: 63  YGQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           +GQPIGE S+ +SSFL  LVRE VPVTL DWRKLST  K
Sbjct: 177 FGQPIGEASIGLSSFLGLLVREEVPVTLSDWRKLSTSSK 215

[Close]

BLAST of Tan0002833 vs. NCBI nr
Match: XP_038904087.1 (uncharacterized protein LOC120090469 isoform X2 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 3   QRLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNE 62
           Q+L S GQ    ++RS  V  +I+ASE  ++   KKCRG TKM   A+ E  K+DITFNE
Sbjct: 110 QKLASRGQVSPILDRSQNVGEHINASELTIQQFPKKCRGPTKMNTNAIEECNKVDITFNE 169

Query: 63  YGQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           +GQPIGE S+ +SSFL  LVRE VPVTL DWRKLST  K
Sbjct: 170 FGQPIGEASIGLSSFLGLLVREEVPVTLSDWRKLSTSSK 208

[Close]

BLAST of Tan0002833 vs. NCBI nr
Match: XP_038904088.1 (uncharacterized protein LOC120090469 isoform X3 [Benincasa hispida])

HSP 1 Score: 107.8 bits (268), Expect = 5.4e-20
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 3   QRLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNE 62
           Q+L S GQ    ++RS  V  +I+ASE  ++   KKCRG TKM   A+ E  K+DITFNE
Sbjct: 107 QKLASRGQVSPILDRSQNVGEHINASELTIQQFPKKCRGPTKMNTNAIEECNKVDITFNE 166

Query: 63  YGQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           +GQPIGE S+ +SSFL  LVRE VPVTL DWRKLST  K
Sbjct: 167 FGQPIGEASIGLSSFLGLLVREEVPVTLSDWRKLSTSSK 205

[Close]

BLAST of Tan0002833 vs. ExPASy TrEMBL
Match: A0A1S4DZ36 (uncharacterized protein LOC103493280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493280 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   RLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNEY 63
           +L S GQ    ++RS  V   I+ SE  ++   KK RG TKMK IA+ E  K+DITF+++
Sbjct: 105 KLASRGQVSPILDRSQNVGERINVSEPTMQQLPKKHRGPTKMKPIAIEECNKVDITFDQF 164

Query: 64  GQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           GQPIGE S+ +SSFL +LVRE+VPVTL DWRKLSTR K
Sbjct: 165 GQPIGEASIGLSSFLGALVREIVPVTLSDWRKLSTRSK 202

[Close]

BLAST of Tan0002833 vs. ExPASy TrEMBL
Match: A0A5D3D4T6 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00530 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   RLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNEY 63
           +L S GQ    ++RS  V   I+ SE  ++   KK RG TKMK IA+ E  K+DITF+++
Sbjct: 466 KLASRGQVSPILDRSQNVGERINVSEPTMQQLPKKHRGPTKMKPIAIEECNKVDITFDQF 525

Query: 64  GQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           GQPIGE S+ +SSFL +LVRE+VPVTL DWRKLSTR K
Sbjct: 526 GQPIGEASIGLSSFLGALVREIVPVTLSDWRKLSTRSK 563

[Close]

BLAST of Tan0002833 vs. ExPASy TrEMBL
Match: A0A1S4DZ41 (uncharacterized protein LOC103493280 isoform X5 OS=Cucumis melo OX=3656 GN=LOC103493280 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   RLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNEY 63
           +L S GQ    ++RS  V   I+ SE  ++   KK RG TKMK IA+ E  K+DITF+++
Sbjct: 105 KLASRGQVSPILDRSQNVGERINVSEPTMQQLPKKHRGPTKMKPIAIEECNKVDITFDQF 164

Query: 64  GQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           GQPIGE S+ +SSFL +LVRE+VPVTL DWRKLSTR K
Sbjct: 165 GQPIGEASIGLSSFLGALVREIVPVTLSDWRKLSTRSK 202

[Close]

BLAST of Tan0002833 vs. ExPASy TrEMBL
Match: A0A1S4DZ32 (uncharacterized protein LOC103493280 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103493280 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   RLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNEY 63
           +L S GQ    ++RS  V   I+ SE  ++   KK RG TKMK IA+ E  K+DITF+++
Sbjct: 105 KLASRGQVSPILDRSQNVGERINVSEPTMQQLPKKHRGPTKMKPIAIEECNKVDITFDQF 164

Query: 64  GQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           GQPIGE S+ +SSFL +LVRE+VPVTL DWRKLSTR K
Sbjct: 165 GQPIGEASIGLSSFLGALVREIVPVTLSDWRKLSTRSK 202

[Close]

BLAST of Tan0002833 vs. ExPASy TrEMBL
Match: A0A1S4DZ18 (uncharacterized protein LOC103493280 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103493280 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.8e-20
Identity = 55/98 (56.12%), Postives = 70/98 (71.43%), Query Frame = 0


Query: 4   RLDSIGQAPLNVERSSGVEVNIDASEQILKHPSKKCRGATKMKAIAVGEHRKIDITFNEY 63
           +L S GQ    ++RS  V   I+ SE  ++   KK RG TKMK IA+ E  K+DITF+++
Sbjct: 105 KLASRGQVSPILDRSQNVGERINVSEPTMQQLPKKHRGPTKMKPIAIEECNKVDITFDQF 164

Query: 64  GQPIGEVSVEMSSFLDSLVREVVPVTLQDWRKLSTRLK 102
           GQPIGE S+ +SSFL +LVRE+VPVTL DWRKLSTR K
Sbjct: 165 GQPIGEASIGLSSFLGALVREIVPVTLSDWRKLSTRSK 202

The following BLAST results are available for this feature:

BLAST of Tan0002833 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002833 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904085.1	5.4e-20	57.58	uncharacterized protein LOC120090469 isoform X1 [Benincasa hispida]	[more]
XP_038904090.1	5.4e-20	57.58	uncharacterized protein LOC120090469 isoform X5 [Benincasa hispida]	[more]
XP_038904089.1	5.4e-20	57.58	uncharacterized protein LOC120090469 isoform X4 [Benincasa hispida]	[more]
XP_038904087.1	5.4e-20	57.58	uncharacterized protein LOC120090469 isoform X2 [Benincasa hispida]	[more]
XP_038904088.1	5.4e-20	57.58	uncharacterized protein LOC120090469 isoform X3 [Benincasa hispida]	[more]

BLAST of Tan0002833 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZ36	5.8e-20	56.12	uncharacterized protein LOC103493280 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3D4T6	5.8e-20	56.12	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00...	[more]
A0A1S4DZ41	5.8e-20	56.12	uncharacterized protein LOC103493280 isoform X5 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DZ32	5.8e-20	56.12	uncharacterized protein LOC103493280 isoform X6 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DZ18	5.8e-20	56.12	uncharacterized protein LOC103493280 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Tan0002833 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33144	OS10G0409366 PROTEIN-RELATED	coord: 13..101
None	No IPR available	PANTHER	PTHR33144:SF27	SUBFAMILY NOT NAMED	coord: 13..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002833.1	Tan0002833.1	mRNA