Tan0002745 (gene) Snake gourd v1

Overview
NameTan0002745
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG03: 732291 .. 732964 (-)
RNA-Seq ExpressionTan0002745
SyntenyTan0002745
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACGGTGGGAAGGGAAATGGATGGATCACTAGTATCAGTTGCAATGGTGGGTGGATCAGGGGAGGCGGTGAGAAGGATTAGAGAGTCAATAGAGAAGGTGGGAAGGGAAGTAGATGGATCGGTGTGATCAGTGGCAATGGTGGGTGGATCAGTGGCAATGGTGGATGGGAAGGGTGAGGCGATGAGTGGATCAGTGGAGGTGGTGGGAAGGATGGGGAAGTCAGTGGAGACGGTGGGAATGGAAGTAGATGGATCGGTGGTATCAGTGGTAGTGGTGAGTGGATCAGTGGAGGCAGTGAGAAGGATGGGGGAGTGAGTAGCGGCGGTGGGAAGGGAAGTGGATGGATCGGTGGTATCAGTAGCAATGGTGGGTGGATCAGTGGAGGCGGTGATACGGGAAGTGGGGGCGGTAGGATCAATAACAATGGTGGGTGGATCAGTGGAGGCGGTGGGAAGGATGAGGGACTCAGTGGAGTCAGTGGGAATGGAAGTGGAACTGGATGGATCAGTGGTATCAGTGTCAATTGTGAGTGGATCAGTGACGATGGTGGGTGGATCAGTGGCGATGGTAGGAATGATGGGGCAAGTGGATGGAACAGTAGAGGAATCAATGGTGATGTTCCTAAGGATGGGGCTAGTGGATGGATTGGCGGGGAGATTAGTGTGTAG

mRNA sequence

ATGGAGACGGTGGGAAGGGAAATGGATGGATCACTAGTATCAGTTGCAATGGTGGGTGGATCAGGGGAGGCGGTGAGAAGGATTAGAGAGTCAATAGAGAAGGTGGGAAGGGAAGTAGATGGATCGGATGGGGAAGTCAGTGGAGACGGTGGGAATGGAAGTAGATGGATCGGTGGTATCAGTGGTAGTGGTGAGTGGATCAGTGGAGGCAGTGAGAAGGATGGGGGAGTGAGTAGCGGCGGTGGGAAGGGAAGTGGATGGATCGGTGGTATCAGTAGCAATGGTGGGTGGATCAGTGGAGGCGGTGATACGGGAAGTGGGGGCGGTAGGATCAATAACAATGGTGGGTGGATCAGTGGAGGCGGTGGGAAGGATGAGGGACTCAGTGGAGTCAGTGGGAATGGAAGTGGAACTGGATGGATCAGTGGTATCAGTGTCAATTGTGAGTGGATCAGTGACGATGGTGGGTGGATCAGTGGCGATGGTAGGAATGATGGGGCAAGTGGATGGAACAGTAGAGGAATCAATGGTGATGTTCCTAAGGATGGGGCTAGTGGATGGATTGGCGGGGAGATTAGTGTGTAG

Coding sequence (CDS)

ATGGAGACGGTGGGAAGGGAAATGGATGGATCACTAGTATCAGTTGCAATGGTGGGTGGATCAGGGGAGGCGGTGAGAAGGATTAGAGAGTCAATAGAGAAGGTGGGAAGGGAAGTAGATGGATCGGATGGGGAAGTCAGTGGAGACGGTGGGAATGGAAGTAGATGGATCGGTGGTATCAGTGGTAGTGGTGAGTGGATCAGTGGAGGCAGTGAGAAGGATGGGGGAGTGAGTAGCGGCGGTGGGAAGGGAAGTGGATGGATCGGTGGTATCAGTAGCAATGGTGGGTGGATCAGTGGAGGCGGTGATACGGGAAGTGGGGGCGGTAGGATCAATAACAATGGTGGGTGGATCAGTGGAGGCGGTGGGAAGGATGAGGGACTCAGTGGAGTCAGTGGGAATGGAAGTGGAACTGGATGGATCAGTGGTATCAGTGTCAATTGTGAGTGGATCAGTGACGATGGTGGGTGGATCAGTGGCGATGGTAGGAATGATGGGGCAAGTGGATGGAACAGTAGAGGAATCAATGGTGATGTTCCTAAGGATGGGGCTAGTGGATGGATTGGCGGGGAGATTAGTGTGTAG

Protein sequence

METVGREMDGSLVSVAMVGGSGEAVRRIRESIEKVGREVDGSDGEVSGDGGNGSRWIGGISGSGEWISGGSEKDGGVSSGGGKGSGWIGGISSNGGWISGGGDTGSGGGRINNNGGWISGGGGKDEGLSGVSGNGSGTGWISGISVNCEWISDDGGWISGDGRNDGASGWNSRGINGDVPKDGASGWIGGEISV
Homology
[Close]
BLAST of Tan0002745 vs. NCBI nr
Match: XP_038975522.1 (glycine-rich protein DOT1-like [Phoenix dactylifera])

HSP 1 Score: 55.5 bits (132), Expect = 6.1e-04
Identity = 66/165 (40.00%), Postives = 74/165 (44.85%), Query Frame = 0 

Query: 41  GSDGEVSGDGGNGSRWIGGISGSGE------WISGGSEKDGGVSSGGGKGSGWIGGI--- 100
           G  G  SG GGN   W  G  GSG       W  GG    G   SGGG   GW GG    
Sbjct: 50  GYQGGRSGGGGNNGGWPSGSGGSGSGGNNGGWPGGGGYNGGWPGSGGGNNGGWPGGSGGG 109

Query: 101 ---SSNGGWISGGGDTGSGGGRINNNGGWISGGGGKDEGLSGVSGNGSGTGWISGISVNC 160
               +NGGW  G G  GSGGG    NGGW  GGGG + G  G  G G+  G+  G   N 
Sbjct: 110 GNGGNNGGWPGGSGGGGSGGG---YNGGWPGGGGGNNGGWPG-GGGGNNGGYSGGGGGN- 169

Query: 161 EWISDDGGWISGDGRNDGASGWNSRGINGDVPKDGASGWIGGEIS 194
                +GGW  G G N+G    +  G NG  P  G  G  GG+ S
Sbjct: 170 -----NGGWPGGGGGNNGGYSGSGGGNNGGYPGGGGGGKQGGDPS 204

The following BLAST results are available for this feature:
BLAST of Tan0002745 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002745 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038975522.16.1e-0440.00glycine-rich protein DOT1-like [Phoenix dactylifera][more]
BLAST of Tan0002745 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Tan0002745 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002745.1Tan0002745.1mRNA