Tan0002514 (gene) Snake gourd v1

Overview


Name	Tan0002514
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty1-copia retrotransposon protein
Location	LG08: 3332304 .. 3332816 (-)
RNA-Seq Expression	Tan0002514
Synteny	Tan0002514

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAATTGGAGCCACTCGATGGAGCAAATTACCGTCGTTGGTCCCAGAAGCTACTGATCTTCTTCGAGCAATTAGAGGTGGACTATGTTCTTACCATAGACCATTCGAACCAGGACCGATCCAACGTTCCAGCTCCTGTTCATCCGGCCGCATCTACTGATACGCAATATGTCCCTACTCTTACTGATCCAGAAAAATATGAGAAAGATAACAAGACAGTACGGGGCCATCTACTCAACCACATGACAGATTCCTTATTCGATCTGTTCGTCATTCAGAAATCTGCAAAAGTCATATGGAGTACTCTCGAATCCAGATATGGTGGTGATGATGCTAGCAGGAGAAAATACGTTGTCGGCAAATGGCTGCAGTTTCAGATGATGGATGACAAACCGGTGATGGACCAGGTTCATGAGTATGAGAATCTGGTGGCCAATGTTCTGTCAGAAGGGATGAAAATGTGCGAAATTCTTTAG

mRNA sequence

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAATTGGAGCCACTCGATGGAGCAAATTACCGTCGTTGGTCCCAGAAGCTACTGATCTTCTTCGAGCAATTAGAGGTGGACTATAAATCTGCAAAAGTCATATGGAGTACTCTCGAATCCAGATATGGTGGTGATGATGCTAGCAGGAGAAAATACGTTGTCGGCAAATGGCTGCAGTTTCAGATGATGGATGACAAACCGGTGATGGACCAGGTTCATGAGTATGAGAATCTGGTGGCCAATGTTCTGTCAGAAGGGATGAAAATGTGCGAAATTCTTTAG

Coding sequence (CDS)

ATGTCGATCAAATCCGGGAAGGTTCTTCCAGATCTGTCCAAATTGGAGCCACTCGATGGAGCAAATTACCGTCGTTGGTCCCAGAAGCTACTGATCTTCTTCGAGCAATTAGAGGTGGACTATAAATCTGCAAAAGTCATATGGAGTACTCTCGAATCCAGATATGGTGGTGATGATGCTAGCAGGAGAAAATACGTTGTCGGCAAATGGCTGCAGTTTCAGATGATGGATGACAAACCGGTGATGGACCAGGTTCATGAGTATGAGAATCTGGTGGCCAATGTTCTGTCAGAAGGGATGAAAATGTGCGAAATTCTTTAG

Protein sequence

MSIKSGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDYKSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVMDQVHEYENLVANVLSEGMKMCEIL

Homology

[Close]

BLAST of Tan0002514 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 97/181 (53.59%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. NCBI nr
Match: KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 4.6e-38
Identity = 97/181 (53.59%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. NCBI nr
Match: KAA0048277.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 95/181 (52.49%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAK 120

[Close]

BLAST of Tan0002514 vs. NCBI nr
Match: TYK04957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 96/181 (53.04%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. NCBI nr
Match: KAA0056761.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 96/181 (53.04%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. ExPASy TrEMBL
Match: A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 97/181 (53.59%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.2e-38
Identity = 97/181 (53.59%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. ExPASy TrEMBL
Match: A0A5D3BZH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001760 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.5e-38
Identity = 96/181 (53.04%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. ExPASy TrEMBL
Match: A0A5A7U214 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002010 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.5e-38
Identity = 95/181 (52.49%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTTVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFAVQKSAK 120

[Close]

BLAST of Tan0002514 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.5e-38
Identity = 96/181 (53.04%), Postives = 101/181 (55.80%), Query Frame = 0


Query: 1   MSIK-SGKVLPDLSKLEPLDGANYRRWSQKLLIFFEQLEVDY------------------ 60
           MSIK S K+LPDLSKLEPLDG NYRRWSQKLLIFFEQLEVDY                  
Sbjct: 1   MSIKTSNKILPDLSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTSDPPTTTSTS 60

Query: 61  --------------------------------------------------------KSAK 107
                                                                   KSAK
Sbjct: 61  SDPESSTGPLTAVAVTDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQKSAK 120

[Close]

BLAST of Tan0002514 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-07
Identity = 24/82 (29.27%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 23  YRRWSQKLLIFFEQLEVDYKSAKVIWSTLESRYGGDDASRRKYVVGKWLQFQMMDDKPVM 82
           YRR+SQK           +K AK +W  L+  Y  D++  ++  V K+++F+M++++P++
Sbjct: 273 YRRYSQK-----------FKHAKELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPIL 332

Query: 83  DQVHEYENLVANVLSEGMKMCE 105
           +QV  +  +  +++S GM + E
Sbjct: 333 EQVQVFNKIADSIVSAGMFLDE 343

The following BLAST results are available for this feature:

BLAST of Tan0002514 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002514 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04394.1	4.6e-38	53.59	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051006.1	4.6e-38	53.59	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048277.1	1.3e-37	52.49	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04957.1	1.3e-37	53.04	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056761.1	1.8e-37	53.04	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0002514 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9X9	2.2e-38	53.59	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZI1	2.2e-38	53.59	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BZH6	6.5e-38	53.04	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U214	6.5e-38	52.49	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C5T2	8.5e-38	53.04	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0002514 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	2.6e-07	29.27	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 41..105
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 41..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002514.1	Tan0002514.1	mRNA