Tan0002508 (gene) Snake gourd v1

Overview
NameTan0002508
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 3914631 .. 3915531 (-)
RNA-Seq ExpressionTan0002508
SyntenyTan0002508
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACTGCTTGAAAGTTCCATCAAATCAAGATCAAGATCAAATTCAAAATCAAAATCAAATCATCTTTCTACACGCCGAGGAAAAGGATTTTGAGACGATTTCATAATTGCGATTACTTTTGCAGATTGATTAGAGAGCCCTAATTTGACGCCGGAGATGATGCTCGTGTCGGTAGTAGCGGAGCTTCTGGAGGAGTACACGGTGCTGCTCGCGGAGGTGCTCCGACAGCTCTTCAATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCGATAACTCCTCCTCTGCCCTAACTCACTCCAATCGGCGAAGCGGCGTAGCCGCGTAGGCGATTTTTGTAATTCTCTTCTCTCACAGCTTGTATCATATATTATAGCTCGAGTTTCTTCTTCGTCTTGTTCTGGTTTGTATCTGGATTGTTCTTCGAATTTGAGATTATGCCGATTTTGTTCTTTTTTAATCTTGTTCTTCGAATTTGAGTGAGGAGTTTGAGCGCAGTTCTTTTTTGGATTTCGATTTTTTCGGATGAAGGTTAATTGGATTAGAAGTAATTGATTTTGAGAATTTGGATCTCTGTTTTCCTCTGTTTGAATTTGGAAACGGATTGGGGGCTGGCAACTGAGATGGCCACTGATTAATCGGCGGATCTTTTTCATTGGAAAAATTAATCAACAAGCTGAGGTTGAATTCAAATTTAGTCCGACGACTTTGAAGTTTGATGATGGAATCTTAACAGTTATCAGCTCCTGAACTTCAACAACTTTTGAATGATTATCATTAATTTCTCAAGAATTCGGGTCGTTAATATCATTATTTTTCTAAATATAAAATATATTTTTTAATACCATAGAACTTGGGAGATTTGGCCCACAAGAGGAG

mRNA sequence

CACTGCTTGAAAGTTCCATCAAATCAAGATCAAGATCAAATTCAAAATCAAAATCAAATCATCTTTCTACACGCCGAGGAAAAGGATTTTGAGACGATTTCATAATTGCGATTACTTTTGCAGATTGATTAGAGAGCCCTAATTTGACGCCGGAGATGATGCTCGTGTCGGTAGTAGCGGAGCTTCTGGAGGAGTACACGGTGCTGCTCGCGGAGGTGCTCCGACAGCTCTTCAATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCGATAACTCCTCCTCTGCCCTAACTCACTCCAATCGGCGAAGCGGCGTAGCCGCGTAGGCGATTTTTGTAATTCTCTTCTCTCACAGCTTGTATCATATATTATAGCTCGAGTTTCTTCTTCGTCTTGTTCTGGTTTGTATCTGGATTGTTCTTCGAATTTGAGATTATGCCGATTTTGTTCTTTTTTAATCTTGTTCTTCGAATTTGAGTGAGGAGTTTGAGCGCAGTTCTTTTTTGGATTTCGATTTTTTCGGATGAAGGTTAATTGGATTAGAAGTAATTGATTTTGAGAATTTGGATCTCTGTTTTCCTCTGTTTGAATTTGGAAACGGATTGGGGGCTGGCAACTGAGATGGCCACTGATTAATCGGCGGATCTTTTTCATTGGAAAAATTAATCAACAAGCTGAGGTTGAATTCAAATTTAGTCCGACGACTTTGAAGTTTGATGATGGAATCTTAACAGTTATCAGCTCCTGAACTTCAACAACTTTTGAATGATTATCATTAATTTCTCAAGAATTCGGGTCGTTAATATCATTATTTTTCTAAATATAAAATATATTTTTTAATACCATAGAACTTGGGAGATTTGGCCCACAAGAGGAG

Coding sequence (CDS)

ATGATGCTCGTGTCGGTAGTAGCGGAGCTTCTGGAGGAGTACACGGTGCTGCTCGCGGAGGTGCTCCGACAGCTCTTCAATTCCGCGCCATTTCCTCGCCGAGTCCGATTTCTCATCCTTCACAATCTTCCTTTCGCCGATAACTCCTCCTCTGCCCTAACTCACTCCAATCGGCGAAGCGGCGTAGCCGCGTAG

Protein sequence

MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADNSSSALTHSNRRSGVAA
Homology
BLAST of Tan0002508 vs. NCBI nr
Match: XP_022970120.1 (uncharacterized protein LOC111469109 [Cucurbita maxima])

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-17
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADN---SSSALTHSN 60
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLPFA+N   SSSAL HSN
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSALIHSN 60

Query: 61 RRSGVAA 65
          R SG  A
Sbjct: 61 RPSGAVA 67

BLAST of Tan0002508 vs. NCBI nr
Match: XP_022928978.1 (uncharacterized protein LOC111435715 [Cucurbita moschata])

HSP 1 Score: 96.7 bits (239), Expect = 7.9e-17
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADN---------SSS 60
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLPFA+N         SSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60

Query: 61 ALTHSNRRSGVAA 65
          AL HSNR SG  A
Sbjct: 61 ALIHSNRPSGAVA 73

BLAST of Tan0002508 vs. NCBI nr
Match: XP_023520510.1 (uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADN-----SSSALTH 60
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLPFA+N     SSSAL +
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSALIY 60

Query: 61 SNRRSGVAA 65
          SNR SG  A
Sbjct: 61 SNRPSGAVA 69

BLAST of Tan0002508 vs. NCBI nr
Match: KAG7017064.1 (hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADN------------ 60
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLPFA+N            
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60

Query: 61 SSSALTHSNRRSGVAA 65
          SSSAL HSNR SG  A
Sbjct: 61 SSSALIHSNRPSGAVA 76

BLAST of Tan0002508 vs. NCBI nr
Match: XP_022159655.1 (uncharacterized protein LOC111025999 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADNSSSA 53
          MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLP  +NS+S+
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSS 52

BLAST of Tan0002508 vs. ExPASy TrEMBL
Match: A0A6J1I1Z0 (uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.7e-18
Identity = 55/67 (82.09%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADN---SSSALTHSN 60
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLPFA+N   SSSAL HSN
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSALIHSN 60

Query: 61 RRSGVAA 65
          R SG  A
Sbjct: 61 RPSGAVA 67

BLAST of Tan0002508 vs. ExPASy TrEMBL
Match: A0A6J1EQP1 (uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC111435715 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.8e-17
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADN---------SSS 60
          MMLVSV+AE+LEEYTVLL EVLRQLF+SAPFPRRVRFLILHNLPFA+N         SSS
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSSSSSSSSSSSS 60

Query: 61 ALTHSNRRSGVAA 65
          AL HSNR SG  A
Sbjct: 61 ALIHSNRPSGAVA 73

BLAST of Tan0002508 vs. ExPASy TrEMBL
Match: A0A6J1DZC9 (uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025999 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.0e-15
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADNSSSA 53
          MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLP  +NS+S+
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSS 52

BLAST of Tan0002508 vs. ExPASy TrEMBL
Match: A0A1S3AUP0 (uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADNSSS 52
          MMLVSV+AE+LEEYTV+L++VLRQLF SAPFPRRVRFLILHNLPFAD  ++
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTA 51

BLAST of Tan0002508 vs. ExPASy TrEMBL
Match: A0A0A0KM75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADNSSS 52
          MMLVSV+AE+LEEYTV+L++VLRQLF SAPFP RVRFLILHNLPFAD  ++
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTA 51

BLAST of Tan0002508 vs. TAIR 10
Match: AT1G33055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-09
Identity = 27/51 (52.94%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPFADNSSS 52
          M+LV+++AE+++EYTV+LA V+  LF+ APFPRR+R  IL++LPF  +++S
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPFHSSNTS 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022970120.11.6e-1782.09uncharacterized protein LOC111469109 [Cucurbita maxima][more]
XP_022928978.17.9e-1775.34uncharacterized protein LOC111435715 [Cucurbita moschata][more]
XP_023520510.11.3e-1678.26uncharacterized protein LOC111783933 [Cucurbita pepo subsp. pepo][more]
KAG7017064.11.8e-1672.37hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022159655.11.6e-1490.38uncharacterized protein LOC111025999 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1I1Z07.7e-1882.09uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109... [more]
A0A6J1EQP13.8e-1775.34uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1DZC98.0e-1590.38uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A1S3AUP01.7e-1280.39uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=... [more]
A0A0A0KM756.3e-1278.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G33055.12.2e-0952.94unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48175OS04G0581700 PROTEINcoord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002508.1Tan0002508.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity