Tan0002505 (gene) Snake gourd v1

Overview


Name	Tan0002505
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Single-stranded DNA-binding protein
Location	LG05: 74459189 .. 74461031 (+)
RNA-Seq Expression	Tan0002505
Synteny	Tan0002505

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCATTGTCCGAACTCGAATCGGGTCTACTTTCAGAAGGGTTCTATTCTAGGGTTTAAGCTTTTCGCTGAATTTCTGATTCTGTCAATCACGAAGACGATGACCTCCATGGCTGCACTGTCCAGAAGGCTCTGCCGCTCTCTGCTGTCGAATTCAAAAGCTTCTCATCACCACGACATCTTCCCCGTGACCTTTTGCAGTAACAACCTTTTCTTCCGCTCGGTCTCAGACATCAGTGACTCCAGTTTTGATTCGGACATGGACTTGGACTCGCATTCAGTAACTAATCGACCTTCTGTCTCACCGTCCTCGTCCCAGTCATCAACTCAGATGAGAACGATCTACAATCGACCACTGGAAAATGGCCTTGATGCCGGCATTTATAAGGTACATTGATGTGGGAGTGTATTGGGAATTTCGATTCTCGATGTTTGATTGCTTACATTTTCGTCTTAATAGTTTTCATGTTTGCGTGAAGGCTATATTGGTGGGTCAGGCGGGGCAGAAGCCATTGCAGAAGCAGCTGAAGAGTGGTAGAACAGTGACGCTGTTATCAGTAGGGACGGGTGGGATTCGTAATAATCGGAGACCCTTGGCTAATGAGGAACCGAAAGAGTATGCAAATCGATGCGCAGTTCAGTGGCATCGGGTTTCGATTTATCCTCAGAGACTAGGCGATATTGTCATGAAGCACGTCGTGCCTGGGTAAGCTTTTCGGTTTTAACCATTAATCAATCTACCTGAGATAATGCCATGGAGATTCATTTATATTCTGCAATCAATTGCCGTGAATATCGTGATAGTGGCAATGGATATTAACGAGCTTGTGTTATTTTAGTAAAGTGGTATGAAGCTCCACTAATTAATTTCAATTTGAAACTGAGCCTGTTATTAACCTTGTAATGATTTTGTTTTCTGGTTATTGCAGTCTTAGTTTCCTCAATTCTTTGTTACAGCTTCATATTTACAATGTAAGTTTGTCCTTTTCAGTTCAATTTTGTATTTGGAGGGGAATTTGGAGACCAAAATTTTCACTGATCCAACAACTGGTCTTGTTCGACGTATTAGAGAAATTGCCATTCGTCGCAATGGTACTGCTCTTATTATTTTATAGTCACCTTGTTTTTATGAATATAGAGTTCCACATATATTCTGGCTACTTAAACTACATACCATCAGTGTCATCTTTAATTAAAAAAAAAAAATAGGTAAGTTTTGTTTTGAACTGTGATGAAGGTACAGCCTCTTTACAATGCAAATGTCCTTTTTTGTGTGTTACATTTGTTTCTTTTTAAATTGAAAAAAGCAAATTTATTTTTCTTGTATAGCTGAAAAACCTATGTGGGTACTGACTGGTGTTTCATTTTTTTTCATTTCCCGATCCTCTGTGTATCGGAGAGATTATAAAGAATTTGATAGGAAGTTGATAGTTTTTTTTGCGACTTGCCATTCAAGCATGTCGAAATTAATGGCCCTAGGAGAATTACATATGATCTCCGTTGATAAAGTTTGGTTGTCATGTAGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTGACGTTCAGCAGTCCACTCAATCAGAATTCAGAGGTGTTGGCTATTACTAAGAAATGTTGTTCACAATTTTGTCATCTGAAGGTTTGAATGACCCACTTTTCTCTGTAAATGTTGTGATTTCACTTCAAAATAGTTGCAACAAGGCATTCTGAAAAGGATCTTTTACGTGGCCTTGTGATGATTCCCTCTCCCCACACCCTTTGTTCAGTGACAAATGTTTTTGATATCTGTATGATGATTTACATGAATTTGATTGAGAGAGAATTGCAATTCAAGTTGATTTGGC

mRNA sequence

CATCATTGTCCGAACTCGAATCGGGTCTACTTTCAGAAGGGTTCTATTCTAGGGTTTAAGCTTTTCGCTGAATTTCTGATTCTGTCAATCACGAAGACGATGACCTCCATGGCTGCACTGTCCAGAAGGCTCTGCCGCTCTCTGCTGTCGAATTCAAAAGCTTCTCATCACCACGACATCTTCCCCGTGACCTTTTGCAGTAACAACCTTTTCTTCCGCTCGGTCTCAGACATCAGTGACTCCAGTTTTGATTCGGACATGGACTTGGACTCGCATTCAGTAACTAATCGACCTTCTGTCTCACCGTCCTCGTCCCAGTCATCAACTCAGATGAGAACGATCTACAATCGACCACTGGAAAATGGCCTTGATGCCGGCATTTATAAGGCTATATTGGTGGGTCAGGCGGGGCAGAAGCCATTGCAGAAGCAGCTGAAGAGTGGTAGAACAGTGACGCTGTTATCAGTAGGGACGGGTGGGATTCGTAATAATCGGAGACCCTTGGCTAATGAGGAACCGAAAGAGTATGCAAATCGATGCGCAGTTCAGTGGCATCGGGTTTCGATTTATCCTCAGAGACTAGGCGATATTGTCATGAAGCACGTCGTGCCTGGTTCAATTTTGTATTTGGAGGGGAATTTGGAGACCAAAATTTTCACTGATCCAACAACTGGTCTTGTTCGACGTATTAGAGAAATTGCCATTCGTCGCAATGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTGACGTTCAGCAGTCCACTCAATCAGAATTCAGAGGTGTTGGCTATTACTAAGAAATGTTGTTCACAATTTTGTCATCTGAAGGTTTGAATGACCCACTTTTCTCTGTAAATGTTGTGATTTCACTTCAAAATAGTTGCAACAAGGCATTCTGAAAAGGATCTTTTACGTGGCCTTGTGATGATTCCCTCTCCCCACACCCTTTGTTCAGTGACAAATGTTTTTGATATCTGTATGATGATTTACATGAATTTGATTGAGAGAGAATTGCAATTCAAGTTGATTTGGC

Coding sequence (CDS)

ATGACCTCCATGGCTGCACTGTCCAGAAGGCTCTGCCGCTCTCTGCTGTCGAATTCAAAAGCTTCTCATCACCACGACATCTTCCCCGTGACCTTTTGCAGTAACAACCTTTTCTTCCGCTCGGTCTCAGACATCAGTGACTCCAGTTTTGATTCGGACATGGACTTGGACTCGCATTCAGTAACTAATCGACCTTCTGTCTCACCGTCCTCGTCCCAGTCATCAACTCAGATGAGAACGATCTACAATCGACCACTGGAAAATGGCCTTGATGCCGGCATTTATAAGGCTATATTGGTGGGTCAGGCGGGGCAGAAGCCATTGCAGAAGCAGCTGAAGAGTGGTAGAACAGTGACGCTGTTATCAGTAGGGACGGGTGGGATTCGTAATAATCGGAGACCCTTGGCTAATGAGGAACCGAAAGAGTATGCAAATCGATGCGCAGTTCAGTGGCATCGGGTTTCGATTTATCCTCAGAGACTAGGCGATATTGTCATGAAGCACGTCGTGCCTGGTTCAATTTTGTATTTGGAGGGGAATTTGGAGACCAAAATTTTCACTGATCCAACAACTGGTCTTGTTCGACGTATTAGAGAAATTGCCATTCGTCGCAATGGCCGCCTTGTATTTTTGGGCAAGGGAGAAGGTGACGTTCAGCAGTCCACTCAATCAGAATTCAGAGGTGTTGGCTATTACTAA

Protein sequence

MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHSVTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY

Homology

[Close]

BLAST of Tan0002505 vs. ExPASy Swiss-Prot
Match: Q84J78 (Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g11060 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.4e-20
Identity = 58/176 (32.95%), Postives = 97/176 (55.11%), Query Frame = 0


Query: 41  SVSDISDSSFDSDMDLD-SHSVTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAIL 100
           S S  S    D  ++ D   +VT RP + P               P +     G+++AI+
Sbjct: 28  SKSWFSTGPIDEGVEEDFEENVTERPELQPHGVD-----------PRKGWGFRGVHRAII 87

Query: 101 VGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQ 160
            G+ GQ PLQK L++GRTVT+ +VGTGG+ + R   A  +PK        QWHR++++ +
Sbjct: 88  CGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNE 147

Query: 161 RLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGE 216
            LG   ++ +   S +Y+EG++ET+++ D  +  V+ I EI +RR+G++  +  GE
Sbjct: 148 VLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186

[Close]

BLAST of Tan0002505 vs. ExPASy Swiss-Prot
Match: Q8D254 (Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX=36870 GN=ssb PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-09
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 93  GIYKAILVGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWH 152
           GI K IL+G  GQ P  + + +G  +T LS+ T     N R     E KE       +WH
Sbjct: 5   GINKVILIGNLGQDPEVRYIPNGNAITNLSLATS---ENWRDKNTGESKE-----KTEWH 64

Query: 153 RVSIYPQRLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLG 212
           RV ++  +L ++  +++  GS +Y+EGNL+T+ + D   G  R I EI +  NG +  LG
Sbjct: 65  RVILF-GKLAEVAGEYLKKGSQVYIEGNLQTRKWQD-QNGQDRYITEIVVGINGCMQMLG 114

[Close]

BLAST of Tan0002505 vs. ExPASy Swiss-Prot
Match: Q9XJG4 (Single-stranded DNA-binding protein OS=Escherichia phage P1 OX=10678 GN=ssb PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 0


Query: 93  GIYKAILVGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWH 152
           G+ K IL+G  GQ P  + + +G  V  LS+ T     +++    +E  E        WH
Sbjct: 5   GVNKVILIGTLGQDPEIRYIPNGGAVGRLSIATNESWRDKQTGQQKEQTE--------WH 64

Query: 153 RVSIYPQRLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLG 212
           +V ++  +L +I  +++  GS +Y+EG L+T+ +TD   G+ R   EI + + G +  +G
Sbjct: 65  KVVLF-GKLAEIASEYLRKGSQVYIEGKLKTRKWTD-DAGVERYTTEIIVSQGGTMQMIG 123

Query: 213 KGEGDVQQS 222
               D Q S
Sbjct: 125 ARRDDSQSS 123

[Close]

BLAST of Tan0002505 vs. ExPASy Swiss-Prot
Match: Q9A894 (Single-stranded DNA-binding protein OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=ssb PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.3e-08
Identity = 43/130 (33.08%), Postives = 65/130 (50.00%), Query Frame = 0


Query: 94  IYKAILVGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWHR 153
           + K ILVG  G  P  + L SG  V  L + T     +R   ++ E KE       +WHR
Sbjct: 5   VNKVILVGNLGADPEIRSLGSGDRVANLRIATSETWRDR---SSGERKE-----KTEWHR 64

Query: 154 VSIYPQRLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRR-NGRLVFLG 213
           V I+   L  +  +++  GS +Y+EG L+T+ +TD  TG  +   EI +++  G L  LG
Sbjct: 65  VVIFNDNLVKVAEQYLRKGSTVYIEGALQTRKWTD-NTGQEKYSTEIVLQKFRGELTMLG 124

Query: 214 KGEGDVQQST 223
              GD   S+
Sbjct: 125 GRGGDAGMSS 125

[Close]

BLAST of Tan0002505 vs. ExPASy Swiss-Prot
Match: Q8L2A6 (Single-stranded DNA-binding protein OS=Proteus vulgaris OX=585 GN=ssb PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.0e-08
Identity = 41/140 (29.29%), Postives = 70/140 (50.00%), Query Frame = 0


Query: 93  GIYKAILVGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWH 152
           G+ K ILVG  GQ P  + + +G  V  L++ T     +++   ++E  E        WH
Sbjct: 5   GVNKVILVGNVGQDPEVRYMPNGGAVANLTLATSETWRDKQTGESKEKTE--------WH 64

Query: 153 RVSIYPQRLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLG 212
           RV ++  +L +I  + V  GS +Y+EG L+T+ +TD   G+ +   E+ +   G +  LG
Sbjct: 65  RVVLF-GKLAEITGEFVKKGSQIYIEGALQTRKWTD-QAGVEKYTTEVVVNVGGTMQMLG 124

Query: 213 --KGEGDVQQSTQSEFRGVG 231
             +G  D Q +     +G G
Sbjct: 125 GRQGGNDNQNNNAGSNQGWG 134

[Close]

BLAST of Tan0002505 vs. NCBI nr
Match: XP_023519718.1 (single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519719.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023519720.1 single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.1 bits (1045), Expect = 9.9e-110
Identity = 206/232 (88.79%), Postives = 217/232 (93.53%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMA LSRRL RS LSNSKAS+HHD+ PV + S NL FRSVSDI +SS DSDMDL SHS
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASNHHDVLPVIYSSKNLSFRSVSDIGESSIDSDMDLGSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           V+NRPS+SPSSSQSS+Q RTIYNRPLENGLDAGIYKAILVGQ GQ PLQKQLKSGRTVTL
Sbjct: 61  VSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVSIYPQRLGD+VMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTD TTGLVRRIRE+AIRR+GRLVFLGKGEGDVQQSTQSEFRGVGYY
Sbjct: 181 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFRGVGYY 232

[Close]

BLAST of Tan0002505 vs. NCBI nr
Match: XP_023000724.1 (single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000725.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000726.1 single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima])

HSP 1 Score: 406.8 bits (1044), Expect = 1.3e-109
Identity = 206/232 (88.79%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMA LSRRL RS LSNSKASHHHDI PV + S NL FRSVSDI +SS DSDMDL SHS
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDMDLGSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           V+NRPS+SPSSSQSS+Q RTIYNRPLENGLDAGIYKAILVGQ GQ PLQKQLKSGRTVTL
Sbjct: 61  VSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVSIYPQRLGD+VMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTD TTGLVRRIRE+AIRR+GRLVFLGKGEGDVQQSTQ EF+GVGYY
Sbjct: 181 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGYY 232

[Close]

BLAST of Tan0002505 vs. NCBI nr
Match: XP_038893715.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893716.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893717.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038893718.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-109
Identity = 202/232 (87.07%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMAALSRRLCRSLLSNSKASHHH+I PVT+C+NNL FRSVSDI++SS +S++D DSHS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTYCTNNLSFRSVSDITESSIESNLDSDSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           VTN PS+SPSSSQSST  RTIYNRPLENGLDAG+YKAILVGQ GQ PLQK+LKSG TVTL
Sbjct: 61  VTNPPSLSPSSSQSSTLSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVS+YPQRLGDIVMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGDIVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIF DPTTGLVRRIRE+AIRRNGRL+ LGKGEGD QQST SEF+GVGYY
Sbjct: 181 LETKIFIDPTTGLVRRIREVAIRRNGRLLLLGKGEGDAQQSTPSEFKGVGYY 232

[Close]

BLAST of Tan0002505 vs. NCBI nr
Match: XP_038895598.1 (single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_038895599.1 single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 1.1e-108
Identity = 203/232 (87.50%), Postives = 218/232 (93.97%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMAALSRRLCRSLLSNSKASHHH+I PVT C+NNL FRSVSDI++SS +SD+D DSHS
Sbjct: 1   MTSMAALSRRLCRSLLSNSKASHHHNILPVTSCTNNLSFRSVSDITESSIESDLDSDSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           VTN PS+SPSSSQSSTQ RTIYNRPLENGLDAG+YKAILVGQ GQ PLQK+LKSG TVTL
Sbjct: 61  VTNPPSLSPSSSQSSTQSRTIYNRPLENGLDAGVYKAILVGQVGQSPLQKRLKSGITVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG+IVMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGNIVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTDPTTGLVR IRE+AIRRNGRLVFLGKGE + QQST SEF+GVGYY
Sbjct: 181 LETKIFTDPTTGLVRSIREVAIRRNGRLVFLGKGEVNGQQSTPSEFKGVGYY 232

[Close]

BLAST of Tan0002505 vs. NCBI nr
Match: XP_022137580.1 (single-stranded DNA-binding protein, mitochondrial [Momordica charantia])

HSP 1 Score: 403.3 bits (1035), Expect = 1.4e-108
Identity = 203/232 (87.50%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMAALSR+LCRSLLSNS+ASHH +   +T+C+NN  FRS S+I DSS DSDMD DSHS
Sbjct: 1   MTSMAALSRKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDMDSDSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           VTNRPSVSPSSSQSSTQ R IYNRPLENGLDAGIYKAILVGQAGQ PLQKQLKSGRTVTL
Sbjct: 61  VTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQAGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG+IVMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTDP TGLVRRIRE+AIRRNGRLVFLG G G+VQQSTQSEF+GVGYY
Sbjct: 181 LETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

[Close]

BLAST of Tan0002505 vs. ExPASy TrEMBL
Match: A0A6J1KGM8 (single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111495086 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.3e-110
Identity = 206/232 (88.79%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMA LSRRL RS LSNSKASHHHDI PV + S NL FRSVSDI +SS DSDMDL SHS
Sbjct: 1   MTSMAVLSRRLFRSFLSNSKASHHHDILPVIYSSKNLSFRSVSDIGESSIDSDMDLGSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           V+NRPS+SPSSSQSS+Q RTIYNRPLENGLDAGIYKAILVGQ GQ PLQKQLKSGRTVTL
Sbjct: 61  VSNRPSLSPSSSQSSSQTRTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVSIYPQRLGD+VMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTD TTGLVRRIRE+AIRR+GRLVFLGKGEGDVQQSTQ EF+GVGYY
Sbjct: 181 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQLEFKGVGYY 232

[Close]

BLAST of Tan0002505 vs. ExPASy TrEMBL
Match: A0A6J1C717 (single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111008995 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 6.9e-109
Identity = 203/232 (87.50%), Postives = 216/232 (93.10%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMAALSR+LCRSLLSNS+ASHH +   +T+C+NN  FRS S+I DSS DSDMD DSHS
Sbjct: 1   MTSMAALSRKLCRSLLSNSRASHHPEFLSMTYCTNNSSFRSGSEIGDSSIDSDMDSDSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           VTNRPSVSPSSSQSSTQ R IYNRPLENGLDAGIYKAILVGQAGQ PLQKQLKSGRTVTL
Sbjct: 61  VTNRPSVSPSSSQSSTQTRMIYNRPLENGLDAGIYKAILVGQAGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVS+YPQRLG+IVMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSVYPQRLGEIVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTDP TGLVRRIRE+AIRRNGRLVFLG G G+VQQSTQSEF+GVGYY
Sbjct: 181 LETKIFTDPITGLVRRIREVAIRRNGRLVFLGDGGGNVQQSTQSEFKGVGYY 232

[Close]

BLAST of Tan0002505 vs. ExPASy TrEMBL
Match: A0A6J1E721 (single-stranded DNA-binding protein, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111431312 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 8.5e-107
Identity = 203/232 (87.50%), Postives = 214/232 (92.24%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHS 60
           MTSMA LSRRL RSLLSNSKASHHHDI PV   S NL FRS+SDI +SS  SDM+LDSHS
Sbjct: 1   MTSMAVLSRRLFRSLLSNSKASHHHDILPVICSSKNLSFRSISDIGESSIGSDMNLDSHS 60

Query: 61  VTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTL 120
           V+NRPS+SPSSSQ+    RTIYNRPLENGLDAGIYKAILVGQ GQ PLQKQLKSGRTVTL
Sbjct: 61  VSNRPSLSPSSSQT----RTIYNRPLENGLDAGIYKAILVGQVGQSPLQKQLKSGRTVTL 120

Query: 121 LSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGN 180
           LSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVSIYPQRLGD+VMKHVVPGSILYLEGN
Sbjct: 121 LSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGDVVMKHVVPGSILYLEGN 180

Query: 181 LETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           LETKIFTD TTGLVRRIRE+AIRR+GRLVFLGKGEGDVQQSTQSEF+GVGYY
Sbjct: 181 LETKIFTDSTTGLVRRIREVAIRRSGRLVFLGKGEGDVQQSTQSEFKGVGYY 228

[Close]

BLAST of Tan0002505 vs. ExPASy TrEMBL
Match: A0A0A0LTL6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.6e-105
Identity = 198/234 (84.62%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDM--DLDS 60
           MTSM ALSRRLCRSLLSNSKASHH+DI PVT+C+NNL FRSVSDI++S  +SD+  +LDS
Sbjct: 1   MTSMVALSRRLCRSLLSNSKASHHYDILPVTYCTNNLSFRSVSDITESGIESDLYTELDS 60

Query: 61  HSVTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTV 120
           +SVTN+PS+SPSSSQS TQ R +YNRPLENGLDAGIYKAILVG+ GQ PLQKQLKSGRTV
Sbjct: 61  NSVTNQPSLSPSSSQSPTQPRPVYNRPLENGLDAGIYKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVSIYP RLG+IVMKHVVPGSILYLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPTRLGNIVMKHVVPGSILYLE 180

Query: 181 GNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           GNLETKIFTD  TGLVRRIRE+AIR NGRLVFLGKGEG+ Q+ST SEFRGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKGEGNAQESTPSEFRGVGYY 234

[Close]

BLAST of Tan0002505 vs. ExPASy TrEMBL
Match: A0A1S3C3D2 (single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103495996 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 7.4e-103
Identity = 193/234 (82.48%), Postives = 212/234 (90.60%), Query Frame = 0


Query: 1   MTSMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDM--DLDS 60
           MTS  ALSRRLCRSLLSNSKASHHHDI PVT+C+NNL FRSVSDI++S  +SD+  +LDS
Sbjct: 1   MTSTVALSRRLCRSLLSNSKASHHHDILPVTYCTNNLSFRSVSDITESGIESDLYSELDS 60

Query: 61  HSVTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTV 120
           +SVTN+PS SPSSSQS TQ R +Y+RPLENGLDAGI+KAILVG+ GQ PLQKQLKSGRTV
Sbjct: 61  NSVTNQPSFSPSSSQSPTQSRKVYDRPLENGLDAGIFKAILVGKVGQSPLQKQLKSGRTV 120

Query: 121 TLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLE 180
           TLLSVGTGGIRNNRRPLANEEP+EYANRCAVQWHRVSIYPQRLG+IVMKH VPGSI+YLE
Sbjct: 121 TLLSVGTGGIRNNRRPLANEEPREYANRCAVQWHRVSIYPQRLGNIVMKHAVPGSIMYLE 180

Query: 181 GNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           GNLETKIFTD  TGLVRRIRE+AIR NGRLVFLGK EG+ Q+ST SE RGVGYY
Sbjct: 181 GNLETKIFTDQVTGLVRRIREVAIRGNGRLVFLGKEEGNAQESTSSELRGVGYY 234

[Close]

BLAST of Tan0002505 vs. TAIR 10
Match: AT3G18580.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 271.6 bits (693), Expect = 6.0e-73
Identity = 147/230 (63.91%), Postives = 177/230 (76.96%), Query Frame = 0


Query: 3   SMAALSRRLCRSLLSNSKASHHHDIFPVTFCSNNLFFRSVSDISDSSFDSDMDLDSHSVT 62
           SMA LSRRL RSLLSN + S       ++FC+NN     ++   DS FD   +L+S    
Sbjct: 4   SMATLSRRLYRSLLSNPRISQ----ASMSFCTNN-----ITSPEDSDFD---ELES---P 63

Query: 63  NRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAILVGQAGQKPLQKQLKSGRTVTLLS 122
             P  S   S+ S + R +  RPLENGLD+GI+KAILVGQ GQ PLQK+LKSGRTVTL S
Sbjct: 64  IEPKASDPVSRFSGEERVMEERPLENGLDSGIFKAILVGQVGQLPLQKKLKSGRTVTLFS 123

Query: 123 VGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQRLGDIVMKHVVPGSILYLEGNLE 182
           VGTGGIRNNRRPL NE+P+EYA+R AVQWHRVS+YP+RL D+V+K+V PG+++YLEGNLE
Sbjct: 124 VGTGGIRNNRRPLINEDPREYASRSAVQWHRVSVYPERLADLVLKNVEPGTVIYLEGNLE 183

Query: 183 TKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGEGDVQQSTQSEFRGVGYY 233
           TKIFTDP TGLVRRIRE+AIRRNGR+VFLGK  GD+QQ + +E RGVGYY
Sbjct: 184 TKIFTDPVTGLVRRIREVAIRRNGRVVFLGKA-GDMQQPSSAELRGVGYY 217

[Close]

BLAST of Tan0002505 vs. TAIR 10
Match: AT4G11060.1 (mitochondrially targeted single-stranded DNA binding protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-21
Identity = 58/176 (32.95%), Postives = 97/176 (55.11%), Query Frame = 0


Query: 41  SVSDISDSSFDSDMDLD-SHSVTNRPSVSPSSSQSSTQMRTIYNRPLENGLDAGIYKAIL 100
           S S  S    D  ++ D   +VT RP + P               P +     G+++AI+
Sbjct: 28  SKSWFSTGPIDEGVEEDFEENVTERPELQPHGVD-----------PRKGWGFRGVHRAII 87

Query: 101 VGQAGQKPLQKQLKSGRTVTLLSVGTGGIRNNRRPLANEEPKEYANRCAVQWHRVSIYPQ 160
            G+ GQ PLQK L++GRTVT+ +VGTGG+ + R   A  +PK        QWHR++++ +
Sbjct: 88  CGKVGQAPLQKILRNGRTVTIFTVGTGGMFDQRLVGATNQPK------PAQWHRIAVHNE 147

Query: 161 RLGDIVMKHVVPGSILYLEGNLETKIFTDPTTGLVRRIREIAIRRNGRLVFLGKGE 216
            LG   ++ +   S +Y+EG++ET+++ D  +  V+ I EI +RR+G++  +  GE
Sbjct: 148 VLGSYAVQKLAKNSSVYVEGDIETRVYNDSISSEVKSIPEICVRRDGKIRMIKYGE 186

The following BLAST results are available for this feature:

BLAST of Tan0002505 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84J78	4.4e-20	32.95	Single-stranded DNA-binding protein, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
Q8D254	1.6e-09	35.00	Single-stranded DNA-binding protein OS=Wigglesworthia glossinidia brevipalpis OX...	[more]
Q9XJG4	1.7e-08	29.46	Single-stranded DNA-binding protein OS=Escherichia phage P1 OX=10678 GN=ssb PE=3...	[more]
Q9A894	2.3e-08	33.08	Single-stranded DNA-binding protein OS=Caulobacter vibrioides (strain ATCC 19089...	[more]
Q8L2A6	3.0e-08	29.29	Single-stranded DNA-binding protein OS=Proteus vulgaris OX=585 GN=ssb PE=3 SV=1	[more]

BLAST of Tan0002505 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519718.1	9.9e-110	88.79	single-stranded DNA-binding protein, mitochondrial-like [Cucurbita pepo subsp. p...	[more]
XP_023000724.1	1.3e-109	88.79	single-stranded DNA-binding protein, mitochondrial [Cucurbita maxima] >XP_023000...	[more]
XP_038893715.1	2.2e-109	87.07	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]
XP_038895598.1	1.1e-108	87.50	single-stranded DNA-binding protein, mitochondrial-like [Benincasa hispida] >XP_...	[more]
XP_022137580.1	1.4e-108	87.50	single-stranded DNA-binding protein, mitochondrial [Momordica charantia]	[more]

BLAST of Tan0002505 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGM8	6.3e-110	88.79	single-stranded DNA-binding protein, mitochondrial OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1C717	6.9e-109	87.50	single-stranded DNA-binding protein, mitochondrial OS=Momordica charantia OX=367...	[more]
A0A6J1E721	8.5e-107	87.50	single-stranded DNA-binding protein, mitochondrial-like OS=Cucurbita moschata OX...	[more]
A0A0A0LTL6	1.6e-105	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042140 PE=4 SV=1	[more]
A0A1S3C3D2	7.4e-103	82.48	single-stranded DNA-binding protein, mitochondrial OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Tan0002505 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18580.1	6.0e-73	63.91	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G11060.1	3.1e-21	32.95	mitochondrially targeted single-stranded DNA binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 93..212 e-value: 3.2E-17 score: 64.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..77
None	No IPR available	PANTHER	PTHR10302:SF16	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 2..232
IPR000424	Primosome PriB/single-strand DNA-binding	PFAM	PF00436	SSB	coord: 96..204 e-value: 1.4E-17 score: 63.7
IPR000424	Primosome PriB/single-strand DNA-binding	PROSITE	PS50935	SSB	coord: 94..209 score: 12.888135
IPR000424	Primosome PriB/single-strand DNA-binding	CDD	cd04496	SSB_OBF	coord: 98..189 e-value: 2.2181E-11 score: 56.8518
IPR011344	Single-stranded DNA-binding protein	PANTHER	PTHR10302	SINGLE-STRANDED DNA-BINDING PROTEIN	coord: 2..232
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 93..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002505.1	Tan0002505.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006264	mitochondrial DNA replication
biological_process	GO:0051096	positive regulation of helicase activity
biological_process	GO:0006260	DNA replication
cellular_component	GO:0042645	mitochondrial nucleoid
molecular_function	GO:0003697	single-stranded DNA binding