Tan0002504 (gene) Snake gourd v1

Overview
NameTan0002504
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description50S ribosomal protein L18
LocationLG10: 11198930 .. 11202855 (+)
RNA-Seq ExpressionTan0002504
SyntenyTan0002504
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTGAAATGTCATATAGAGAAAACGCTGCACAACAAAAGGATAAGGCATTCCAAGTAGAAAAGAAGCGAACCAGTAGCCTTCAGTAGGCTCCGGAACAGAAGAAGAAGAAGAAGAACCAGGGCAACAATGTCTTCAGCCACTGCTCCTTTATCGTTCCTCGGCAGTTCCTTTCTAAGCGTCTCTTATTCACAGAACCTTCGCAATCGTCCTCACCTCAATTTTCCGGCAACCACTTCAAGTTCCGGCCGGCGCTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATCAGGAAGAAGGTAATCACAGACTCCATTTCCCCAATTTACAAAACTTAGCGCCTTCCCTCCCTCCCCTTCGCGTCCTTTGTTGTTCTAATTGGGCGATTCTCTCTCTTGTTCAAATAATTTCAGAGATTCACCGGAAATGGAGGTAGGTTCTAGTTATTCTTGCAATAGGCTATCTGGGTTTCATTTATTCTAATTATTCCCGGAAATTTCCTCAACTTTCCGGGAATCACTCTGTGTTTCTCAGTTCTTATTACAAGTGTGTATTGTTAACTTTGAACTTTTGCTTTCAGAGGTAATTCTGGGATTAATATTTTATTTCTCCCCCTATCTTTTGTGCTAGAAGATTGTTAGTTTACTTCCGTATGGATATTGTTTGATTTTAGATATCTATTTGTTGTGAACTTCCGAAGGCTTGATTTGATCATTCACGAATTCATCGTTTCTTGAGTTTAGAAATTATGGTTAGAAGTTTGTCACTGCTCCAATTCACAAGTCCAGGATTTCTGAAGATTGAGGGAAAAGAATTTTCATGGCTGGGAGTTAAAACTTCAAAATAGAAATAGTTCATTCTTCACGGCATCAAATGACAGTTATAAAAGCTATAATAGGAACTCGTTTCAAGATAGGATCTGCAGATTTTCATTTCACAGCCCTCTGGGCCTCAAATGACTTGCAAGTAGATTTATTTATTGGAGAAACCAAATTTCATGGAAAATTGTAGCTTGTACAAAGAGTAGATAGGCAACTAGAGGTTGGAGCCTAGAACCCAAAACAAAATAAGAAAGTGCATATTAATTATTTTTTAGTTAAGAAACAAGGCTCATATGTCGAACCACCATGGATTACATGGCGGGATGGTAATTGATCATCCAAAGCTGGAAGCTAAAGATGTTGCAAGCACACCCTCCAGTTGTCAATATTGAGAAAAATACAGTTACTATATGTTTCAATTGGAAGCCATAAAGGTCACCATTCTACAAATAAATGCCTCCTTTCTCGAATCTTTAATGCTCTTCTTTTCTTTGAATCAAATGCTCCAGAAATGGGATAGGGTAGCCTTATGTCATAGGACTTCAATGACACTAAAATAGTGTCGGGGTAAGACTCAATGGAGAAAATACTGTCGGATGAATGCATTCATAAACAGCATGAGTGTTGAAAGATTTTCCTTCTACTAATTCCAAGCTGCCCAATCATTGGTTACGAAAGAATCCATGTATCTGATTCCCATTGTTATTTATAAGGAAGATATGTGCATCATGCAAAGGAGACGCATGACCCATGCACTTGCACACAACGTGTGCCAGGTTCATGCATTGATTGGATAAGTAGTTTAAAATGCAAACCTTCCTTATCCATGAAATAAGAAATAAGCACAAACAATTATCCAAGATAACTAAATGAGATTCAAAGTGAAGATAAAGTGCAGTTAGTCAGCCATCTTCAAAGGAGATTAGCTTGCGTACAAGCACTAGGAGTTCCTAGAGTTGTGGTGGTTGGATGAGAACTAAGAGGTTTAAATTTAAATTAAAGGTTTTGATTTAAATATTCAAGCTAGTAGATAGAGTTCATACCTCTTTTCTAAGTAGCATGGATTTAATTAAACACTTTGGGAGTTCTATATAAAGAGAGTCTTGGCCTTGATGAGATTGGCGTTCCAATCATTGTCATGTCATTGGGGAGCTAGTGAGATTGACACTATTTCTATTATTGTTGTTATACAAAGGTTGGAACTTTCCTGCATCTTGTGGGTTTAGGTTTTGAATCTTAGTTACAGCTTTCTTGCATGTTCACTTTATCTTTAGTTGTGGGATCTAGTTGTATTGATGGTTTTGGAAGGCGTCCTAGGAAAGGGAGATTGCTTAGGCTGCACCTAGCAATGGCAAACTCAGAACAAAACACCACTCATCCTTGACCTGCACATGACACTTGGGAAGGTGACACTTTCAATCCATGCCATAGGATCTGTCTCCAACTCAAAAGTATTTGGAATACATGTAGGCTGGCTAAAGAAAGATCTCGTCTTTTTTTAATGGGTATTATACCATACTGTCTAAATCTGGAGATCTGCAGGTGATTCTCCATCTATTTCAATTTTTGAACATAGTTGTACAAAGAAGTCAATTGAATCTTTTTAATCATCATTTTTTTATATATCAGGTCATTATGTGAATGTCAGTATGGGTCAATGAGAAATCTGGGATATTGAATCCCTTTAGAACAGCACTGAGTTCACAATTGTTATATTTATGAGAGCCAATTGATTCTTGCTGTTATAGATGTAGTACAGTTCACCTGTACATTCATCTTCTTGTGCCTCAGGTTGAAGGAACATCAGAGAGGCCAAGGTTGTCTGTATTCCGCTCCAACAAGCATCTCTACGTCCAGGTTATTGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGATTAGACTACAGTGCTGGCCCTACCATTGTGAGTTCACTAGAACTAAGAATTAGTTGATTATCTACAAAATTTTTTTGGTTCTAATATTTACTTTCAGAATCATATTGTTGCATTAGTTTGACGTCTATGTAGATCTTCTTACCTCAATTCAAATCGACCCACTAACTTGGTTAGATATTGTGAGATATTTTGTTTATAAACTTGAATACAGAAATGAAATAACACAAGACAAGAAAAACAAAGCTATAGTAAGTGCCAAGAGAAATAGCTGTAAAATATCTTTGCATGGGCATTGAGTGTAGCTATCGTAAATAGCCTTACTTGACCAGGTTTGTTCTATAAGTTCTACCTATATGTCCTTGAAAATTATAAATTTAGTCCCTAAATTTAAAAAAAATTCACTTATGTCTTTACAATTTAACGTATCATTCTATGCATTCTCTTACATTAACACTGTCAATAATGATGTGGGCCTATACTGATTTAGCATGCCATATGGTCATTAAGTAACGAACAAAGACTACATAAAATTACAATTCTGAGTTCAAAGATGATTGAGTTTAAAGACTAAGGGCCTATTTGGAATGACTTTTAAAGTCAAAAGCACTTCTTTCCCTCTTAAAAGCTTTTTTAAAAAACATGTAGAAAGTGATTCCAAATAGACTCTAAATAGAGACCATCAAAATTTAAGATTGCCCCTTCGAGAGCGGGATCCTTATCCTTCTTATATGTGGATGATATGGTTTACAGGAAGTGGCAAAGAAAGTGGGGGAAGCGATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAGTTCTGAGAATCCTTCTGTGTTTTAAACATGTCTTCTGTTTGCTGTGCTGTAACAGTGCCATCAGATGGGCATATTTTTCTGTTGATTAGACCAGAGTTGTAGTTGTTTGAACTGAAATTAAGAGGGAAATTATTTATTCATTCATCTTTTCTTGGGAAATCAATGTCTTTGTGCCATAAATGAAGTTCATCTTATCAAATGGTACATTACAGCAGATAGGAAGTACAAGGAAGTCGATGAAACATAGGCACGAAG

mRNA sequence

CTCTGAAATGTCATATAGAGAAAACGCTGCACAACAAAAGGATAAGGCATTCCAAGTAGAAAAGAAGCGAACCAGTAGCCTTCAGTAGGCTCCGGAACAGAAGAAGAAGAAGAAGAACCAGGGCAACAATGTCTTCAGCCACTGCTCCTTTATCGTTCCTCGGCAGTTCCTTTCTAAGCGTCTCTTATTCACAGAACCTTCGCAATCGTCCTCACCTCAATTTTCCGGCAACCACTTCAAGTTCCGGCCGGCGCTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTGTCTGTATTCCGCTCCAACAAGCATCTCTACGTCCAGGTTATTGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGATTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAGTTCTGAGAATCCTTCTGTGTTTTAAACATGTCTTCTGTTTGCTGTGCTGTAACAGTGCCATCAGATGGGCATATTTTTCTGTTGATTAGACCAGAGTTGTAGTTGTTTGAACTGAAATTAAGAGGGAAATTATTTATTCATTCATCTTTTCTTGGGAAATCAATGTCTTTGTGCCATAAATGAAGTTCATCTTATCAAATGGTACATTACAGCAGATAGGAAGTACAAGGAAGTCGATGAAACATAGGCACGAAG

Coding sequence (CDS)

ATGTCTTCAGCCACTGCTCCTTTATCGTTCCTCGGCAGTTCCTTTCTAAGCGTCTCTTATTCACAGAACCTTCGCAATCGTCCTCACCTCAATTTTCCGGCAACCACTTCAAGTTCCGGCCGGCGCTCTCTCGTTATCGAAGCCAAGGCTACCACCAGACGAGAGGACCGTGCAGCTCGCCATTCTCGCATCAGGAAGAAGGTTGAAGGAACATCAGAGAGGCCAAGGTTGTCTGTATTCCGCTCCAACAAGCATCTCTACGTCCAGGTTATTGATGACTCCAAGATGCATACGCTTGCTGCAGTTTCAACAATGCAGAAATCAATCTCTGAGGGATTAGACTACAGTGCTGGCCCTACCATTGAAGTGGCAAAGAAAGTGGGGGAAGCGATAGCAAAATCTTGTCTGGAGAAAGGAATAACAAAAGTTGCTTTTGACCGTGGTGGATATCCATACCATGGACGTGTGGAAGCACTTGCTGATGCGGCTCGTGAACATGGCCTTCAGTTCTGA

Protein sequence

MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Homology
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BLAST of Tan0002504 vs. ExPASy Swiss-Prot
Match: P82195 (50S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 PE=1 SV=3)

HSP 1 Score: 215.3 bits (547), Expect = 5.3e-55
Identity = 124/173 (71.68%), Postives = 138/173 (79.77%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYS--QNLRNRP-HLNFPATTSSSGRRSLVIEAKATTRREDR 60
           M++AT+ LSF  S+  S S S  Q L   P  +NF   T        +I+AKA TRREDR
Sbjct: 1   MAAATS-LSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP------LIQAKAHTRREDR 60

Query: 61  AARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSA 120
            ARH RIRKKVEGT ERPRL VFRSNKHLYVQVIDD+KMHTLAA STMQK+ISE +DYSA
Sbjct: 61  TARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSA 120

Query: 121 GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           GPT+EVA+K+GE IAKSCLEKGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 GPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

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BLAST of Tan0002504 vs. ExPASy Swiss-Prot
Match: Q9SX68 (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-54
Identity = 113/154 (73.38%), Postives = 125/154 (81.17%), Query Frame = 0 

Query: 17  SVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAARHSRIRKKVEGTSERPR 76
           S      L++R     P ++SS   RS+V+EAK  T  EDR ARHSRIRKKV GT+ERPR
Sbjct: 17  SAFLGNGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPR 76

Query: 77  LSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCL 136
           L VFRSNKHLYVQVIDD+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCL
Sbjct: 77  LCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCL 136

Query: 137 EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           EKGITKVAFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 137 EKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170

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BLAST of Tan0002504 vs. ExPASy Swiss-Prot
Match: Q8SAY0 (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-46
Identity = 96/145 (66.21%), Postives = 118/145 (81.38%), Query Frame = 0 

Query: 28  PHLNFPATTSSSGRRSLVIEA--KATTRREDRAARHSRIRKKVEGTSERPRLSVFRSNKH 87
           P ++ P+ + +  R SLV+ A  K +T + DR ARH R+RKKV GT+ERPRLSVFRSNKH
Sbjct: 26  PAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKH 85

Query: 88  LYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAF 147
           LY QVIDD+K  TL + STM KS+S+ L+YSAGPT+EVA+K+GE IAKSCLEKGITKV F
Sbjct: 86  LYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVF 145

Query: 148 DRGGYPYHGRVEALADAAREHGLQF 171
           DRGG+ YHGR++ALADAARE+GL F
Sbjct: 146 DRGGFLYHGRIKALADAARENGLDF 170

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BLAST of Tan0002504 vs. ExPASy Swiss-Prot
Match: Q5L3S3 (50S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=rplR PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 9.7e-33
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKKVGE +AK  LEKGI KV FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of Tan0002504 vs. ExPASy Swiss-Prot
Match: P09415 (50S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.7e-32
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0 

Query: 53  RREDRAARHSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEG 112
           R   R  RH+RIRKK+ GT+ERPRLSVFRSNKH+Y Q+IDD+K  T+ + ST+ K    G
Sbjct: 7   RNAVRKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEF--G 66

Query: 113 LDYSAGPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           LD  +   IE AKKVGE +AK  LEKGI +V FDRGGY YHGRV+ALADAARE GL+F
Sbjct: 67  LD--STNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLEF 120

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BLAST of Tan0002504 vs. NCBI nr
Match: XP_038885362.1 (50S ribosomal protein L18, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 162/170 (95.29%), Postives = 169/170 (99.41%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M+SATAPLSFLG+SFLSVSYSQNLRNRPHL+FPATTSSSGR SLV+EA+ATTRREDR+AR
Sbjct: 1   MASATAPLSFLGTSFLSVSYSQNLRNRPHLHFPATTSSSGRHSLVVEAQATTRREDRSAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Tan0002504 vs. NCBI nr
Match: XP_008439021.1 (PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK05105.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-80
Identity = 160/170 (94.12%), Postives = 166/170 (97.65%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M+S TAP SFLG+SFLSVSYSQN+ NRPHL+FPATTSSSGR SLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

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BLAST of Tan0002504 vs. NCBI nr
Match: XP_004147640.1 (50S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypothetical protein Csa_010063 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 7.3e-78
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M+S TAP SFL +SFL+VSYSQN+ NRPHL+FP TTSSSGR SLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Tan0002504 vs. NCBI nr
Match: XP_023538937.1 (50S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 300.8 bits (769), Expect = 7.3e-78
Identity = 158/170 (92.94%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           MSSA APLSFLG+S L VSYSQNLR  PHLNFP+TTSSSGR SLVIEAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGTSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

[Close]
BLAST of Tan0002504 vs. NCBI nr
Match: KAG6597602.1 (50S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 158/170 (92.94%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M SA APLSFLGSS L VSYSQNLR  PHLNFP+TTSSSGR SLVIEAKATTRREDRAAR
Sbjct: 1   MPSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTTSSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL F
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLVF 170

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BLAST of Tan0002504 vs. ExPASy TrEMBL
Match: A0A5A7UA63 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00090 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 160/170 (94.12%), Postives = 166/170 (97.65%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M+S TAP SFLG+SFLSVSYSQN+ NRPHL+FPATTSSSGR SLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Tan0002504 vs. ExPASy TrEMBL
Match: A0A1S3AXQ6 (50S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 160/170 (94.12%), Postives = 166/170 (97.65%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M+S TAP SFLG+SFLSVSYSQN+ NRPHL+FPATTSSSGR SLV+EAKATTRREDRAAR
Sbjct: 1   MASTTAPCSFLGTSFLSVSYSQNILNRPHLHFPATTSSSGRHSLVVEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Tan0002504 vs. ExPASy TrEMBL
Match: A0A0A0L9A4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.5e-78
Identity = 155/170 (91.18%), Postives = 163/170 (95.88%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           M+S TAP SFL +SFL+VSYSQN+ NRPHL+FP TTSSSGR SLV+EAKATTRREDR AR
Sbjct: 1   MASTTAPCSFLRTSFLTVSYSQNILNRPHLHFPPTTSSSGRHSLVVEAKATTRREDRTAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKK+GEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKIGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Tan0002504 vs. ExPASy TrEMBL
Match: A0A6J1F5G8 (50S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111442526 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.3e-77
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           MSSA APLSFLGSS L VSYSQNLR  PHLNFP+T SSSGR SLVIEAKATTRREDRAAR
Sbjct: 1   MSSAIAPLSFLGSSILGVSYSQNLRIPPHLNFPSTISSSGRHSLVIEAKATTRREDRAAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGT+ERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY++GPT
Sbjct: 61  HSRIRKKVEGTTERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTSGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 169
           IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL
Sbjct: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGL 168

[Close]
BLAST of Tan0002504 vs. ExPASy TrEMBL
Match: A0A6J1IUS1 (50S ribosomal protein L18, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479481 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 157/170 (92.35%), Postives = 162/170 (95.29%), Query Frame = 0 

Query: 1   MSSATAPLSFLGSSFLSVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAAR 60
           MSSATAPLSFLGSSFL  S SQNLRNR  LNFPATTSSSG+ SL ++AKATTRREDR AR
Sbjct: 1   MSSATAPLSFLGSSFLGRSSSQNLRNRLQLNFPATTSSSGQHSLAVQAKATTRREDRQAR 60

Query: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPT 120
           HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDY+AGPT
Sbjct: 61  HSRIRKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYTAGPT 120

Query: 121 IEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           IEVAKKVGEAIAKSCLEKGI+KVAFDRGGYPYHGRVEALADAAREHGLQF
Sbjct: 121 IEVAKKVGEAIAKSCLEKGISKVAFDRGGYPYHGRVEALADAAREHGLQF 170

[Close]
BLAST of Tan0002504 vs. TAIR 10
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 8.4e-56
Identity = 113/154 (73.38%), Postives = 125/154 (81.17%), Query Frame = 0 

Query: 17  SVSYSQNLRNRPHLNFPATTSSSGRRSLVIEAKATTRREDRAARHSRIRKKVEGTSERPR 76
           S      L++R     P ++SS   RS+V+EAK  T  EDR ARHSRIRKKV GT+ERPR
Sbjct: 17  SAFLGNGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTERPR 76

Query: 77  LSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVAKKVGEAIAKSCL 136
           L VFRSNKHLYVQVIDD+KMHTLA+ ST QK ISE  DY++GPTIEVAKKVGE IAKSCL
Sbjct: 77  LCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCL 136

Query: 137 EKGITKVAFDRGGYPYHGRVEALADAAREHGLQF 171
           EKGITKVAFDRGGYPYHGR+EALA AAREHGLQF
Sbjct: 137 EKGITKVAFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]
BLAST of Tan0002504 vs. TAIR 10
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.1e-15
Identity = 61/164 (37.20%), Postives = 87/164 (53.05%), Query Frame = 0 

Query: 6   APLSFLGSSFLSVSYSQNLRNRPHLNFP-ATTSSSGRRSLVIEAKATTRREDRAARHSRI 65
           A L+ L +    VS     R +P+  FP   T+ S  +  VIEA+  TR E    R+ R 
Sbjct: 2   AALTSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRRS 61

Query: 66  RKKVEGTSERPRLSVFRSNKHLYVQVIDDSKMHTLAAVSTMQKSISEGLDYSAGPTIEVA 125
           RKK  GT  +PRLSVF S+K LY  ++DD     L   ST+QKSI      +    IE A
Sbjct: 62  RKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEAA 121

Query: 126 KKVGEAIAKSCLEKGITKV-AFDRGGYPYHGRVEALADAAREHG 168
           K+VGE + K+ ++  I ++ ++DR G     R++A   A  +HG
Sbjct: 122 KRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHG 162

[Close]
BLAST of Tan0002504 vs. TAIR 10
Match: AT3G17626.1 (structural constituent of ribosome )

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-09
Identity = 28/37 (75.68%), Postives = 30/37 (81.08%), Query Frame = 0 

Query: 118 GPTIEVAKKVGEAIAKSCLEKGITKVAFDRGGYPYHG 155
           G TIE+AKKVGE I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

The following BLAST results are available for this feature:
BLAST of Tan0002504 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P821955.3e-5571.6850S ribosomal protein L18, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL18 P... [more]
Q9SX681.2e-5473.3850S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1... [more]
Q8SAY02.6e-4666.2150S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica OX=3994... [more]
Q5L3S39.7e-3364.4150S ribosomal protein L18 OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ... [more]
P094153.7e-3263.5650S ribosomal protein L18 OS=Geobacillus stearothermophilus OX=1422 GN=rplR PE=1... [more]
BLAST of Tan0002504 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038885362.11.4e-8195.2950S ribosomal protein L18, chloroplastic-like [Benincasa hispida][more]
XP_008439021.12.7e-8094.12PREDICTED: 50S ribosomal protein L18, chloroplastic [Cucumis melo] >KAA0052138.1... [more]
XP_004147640.17.3e-7891.1850S ribosomal protein L18, chloroplastic [Cucumis sativus] >KGN57222.1 hypotheti... [more]
XP_023538937.17.3e-7892.9450S ribosomal protein L18, chloroplastic [Cucurbita pepo subsp. pepo][more]
KAG6597602.11.2e-7792.9450S ribosomal protein L18, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
BLAST of Tan0002504 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UA631.3e-8094.1250S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3AXQ61.3e-8094.1250S ribosomal protein L18, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483939... [more]
A0A0A0L9A43.5e-7891.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171790 PE=3 SV=1[more]
A0A6J1F5G82.3e-7793.4550S ribosomal protein L18, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1IUS13.0e-7792.3550S ribosomal protein L18, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
BLAST of Tan0002504 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48350.18.4e-5673.38Ribosomal L18p/L5e family protein [more]
AT1G14205.11.1e-1537.20Ribosomal L18p/L5e family protein [more]
AT3G17626.12.0e-0975.68structural constituent of ribosome [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004389Ribosomal protein L18, bacterial-typeTIGRFAMTIGR00060TIGR00060coord: 54..170
e-value: 1.5E-42
score: 142.6
IPR004389Ribosomal protein L18, bacterial-typeHAMAPMF_01337_BRibosomal_L18_Bcoord: 52..170
score: 28.096979
NoneNo IPR availableGENE3D3.30.420.100coord: 51..170
e-value: 4.7E-47
score: 161.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..71
NoneNo IPR availablePANTHERPTHR12899:SF339S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 18..170
NoneNo IPR availableCDDcd00432Ribosomal_L18_L5ecoord: 64..168
e-value: 3.99144E-45
score: 141.909
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 53..168
IPR005484Ribosomal protein L18PFAMPF00861Ribosomal_L18pcoord: 52..170
e-value: 2.8E-46
score: 156.6
IPR005484Ribosomal protein L18PANTHERPTHR1289939S RIBOSOMAL PROTEIN L18, MITOCHONDRIALcoord: 18..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002504.1Tan0002504.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome