Tan0002440 (gene) Snake gourd v1

Overview


Name	Tan0002440
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	low-molecular-weight cysteine-rich 26
Location	LG11: 4773584 .. 4774820 (+)
RNA-Seq Expression	Tan0002440
Synteny	Tan0002440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTTTTCTTCCTCCCTATTTTTCATTGTTTTCCTCATTTTCTCAGGTTTGTTTTTTAGATCTCTATGAAGGTTATTAATTAATTTAGATCTCGTTTGATAACTATTCGATTTTTTGTTTTTGGTTTTCGAAAATTGTACTTGTTTTCTCAATATTTCTCTAAAATGGGTTTCATCTTCCCTACTATAATTCCCATATTCTTAAGAAAATATTTGAATTTTTAGCTAAATTCTAAAAAAACAAAAACAAGTTTTTAGAAATTACTTTTAATTTTGAAAATTTGTCTTAATTTTTGAAAACATATCTAAAAAATAGATAAGAAAACATAGAAAGTCATAAGTGGAAGTTGTATTTACAGACTTAATTTTAAAAAACTAATAATAAAAACTAAATAATTATCCAAGAGGACTTTAAAGTTTCAAACCATACCCTTGCATTTTTTTTAATATTTTTTGAATTTATCGTAGTTTAAATATGTCAATTAGATAGATAAATTACATTTTTCAAGTTTGTCTTTAAAGTTGTCAATTTTCTCTCTAATAAATATTTTAAAGTTATTAAATTGAATTTTTACAAAATAGTGTCATTTTTCTCTGTAATAAATATTTTAAATTTATTAAATTGATTTTTTACAAAATAGTGTCATTGTTTTTAATAATACTGTATAGGTAGCTACAACCTTTCAAAAGAATTAAAGAAGTTTTAATTTAGCTATTGAGTTATATTTATGTCGGCATGCCGCCTTAGTATTAGATAAATATATATCAATTCAATCTATCCCTTCATTAATGATTTTTCAACTTATATTTTGAAATCCATAAACTGATTATCACTTATCATTCTCTATTTATAGTTGGATTGAATTAGTTTTAATTCTAGCTAGTAAGCTCATTGTGTTCTTACCTCGTGTTTGAAGTGATTTTTATTTAATTTTAATTAGATCAACTTCATTGGTTTGTTTTAAAACATAAAATTTTGTTGAGAGAAAAAATATATATATAATAAGGGCAATTGATAAATGAGATTGAAAAATTTTGCAGGTGCATTGATGGTGCCTGAAGCAGTCCATGGAGCAAAATGTGAGGAGAAGTTGTATGAAGGATGTGTGTCTAAGGATTGTAGCCAAAGATGTCAACAGAAGTATCCAAATTCATCATCTGAATGTGTTCCAATTCCTCCAATTCCTTATAACTATGTTTGTTATTGCTTCTATGATTGCGCTGCAAATTGA

mRNA sequence

ATGGCAAAGTTTTCTTCCTCCCTATTTTTCATTGTTTTCCTCATTTTCTCAGGTGCATTGATGGTGCCTGAAGCAGTCCATGGAGCAAAATGTGAGGAGAAGTTGTATGAAGGATGTGTGTCTAAGGATTGTAGCCAAAGATGTCAACAGAAGTATCCAAATTCATCATCTGAATGTGTTCCAATTCCTCCAATTCCTTATAACTATGTTTGTTATTGCTTCTATGATTGCGCTGCAAATTGA

Coding sequence (CDS)

ATGGCAAAGTTTTCTTCCTCCCTATTTTTCATTGTTTTCCTCATTTTCTCAGGTGCATTGATGGTGCCTGAAGCAGTCCATGGAGCAAAATGTGAGGAGAAGTTGTATGAAGGATGTGTGTCTAAGGATTGTAGCCAAAGATGTCAACAGAAGTATCCAAATTCATCATCTGAATGTGTTCCAATTCCTCCAATTCCTTATAACTATGTTTGTTATTGCTTCTATGATTGCGCTGCAAATTGA

Protein sequence

MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYEGCVSKDCSQRCQQKYPNSSSECVPIPPIPYNYVCYCFYDCAAN

Homology

[Close]

BLAST of Tan0002440 vs. ExPASy Swiss-Prot
Match: Q9M0F2 (Putative defensin-like protein 160 OS=Arabidopsis thaliana OX=3702 GN=LCR26 PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 9.0e-05
Identity = 31/79 (39.24%), Postives = 39/79 (49.37%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYEG--CVSKDCSQRCQQKYPNSSSE 60
          MAK S S FFI+ L+FS  LMV E   G +C   + +G  C   DC   C   Y N   +
Sbjct: 1  MAKLSCSYFFILMLVFSALLMV-ECDEGKRCHTTIDKGNFCDLVDCRLSCFSGY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C   P +P    C C Y+C
Sbjct: 61 CFDDPKVPGRSNCGCLYNC 77

[Close]

BLAST of Tan0002440 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 1.1e-23
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYEGCVSKDCSQRCQQKYPNSSSECV 60
          MAKFS SLFFI F + S A ++P  V   KCE KLY+GC+ KDC+Q+C  KYPNSSSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 PIPPIPYNYVCYCFYDCAA 80
           +PPIP++Y CYCFYDCAA
Sbjct: 61 AVPPIPFHYSCYCFYDCAA 79

[Close]

BLAST of Tan0002440 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 7.8e-14
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALM-VPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPN-SSS 60
          M++ SSS FFIVFL+ S A M +P+  +   C +KLY+ GCV+ +C QRC  KYPN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVPIPPIPYNYVCYCFYDCA 79
          +C+ +PPIP++  C CFY+CA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

[Close]

BLAST of Tan0002440 vs. NCBI nr
Match: XP_022990690.1 (putative defensin-like protein 129 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF   L F++ L+ S ALM+PEA   + C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHIACLCFFDCPKN 80

[Close]

BLAST of Tan0002440 vs. NCBI nr
Match: XP_022923678.1 (putative defensin-like protein 129 [Cucurbita moschata])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF   L F++ L+ S ALM+PEA   + C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHVACLCFFDCPKN 80

[Close]

BLAST of Tan0002440 vs. NCBI nr
Match: XP_012090834.1 (defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 63.9 bits (154), Expect = 7.1e-07
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MA  S + FFI+FLI S + MVP+A    KC+E L+E GCV +DC + C +K+  +   C
Sbjct: 2  MANLSFNNFFILFLIISVSSMVPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVC 61

Query: 61 VPIPPIPYNYVCYCFYDC 78
          +P      +Y CYCF+ C
Sbjct: 62 IP-NQAKEDYSCYCFWTC 78

[Close]

BLAST of Tan0002440 vs. ExPASy TrEMBL
Match: A0A0A0KU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-24
Identity = 52/79 (65.82%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYEGCVSKDCSQRCQQKYPNSSSECV 60
          MAKFS SLFFI F + S A ++P  V   KCE KLY+GC+ KDC+Q+C  KYPNSSSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 PIPPIPYNYVCYCFYDCAA 80
           +PPIP++Y CYCFYDCAA
Sbjct: 61 AVPPIPFHYSCYCFYDCAA 79

[Close]

BLAST of Tan0002440 vs. ExPASy TrEMBL
Match: A0A0A0KS76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.8e-14
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALM-VPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPN-SSS 60
          M++ SSS FFIVFL+ S A M +P+  +   C +KLY+ GCV+ +C QRC  KYPN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVPIPPIPYNYVCYCFYDCA 79
          +C+ +PPIP++  C CFY+CA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

[Close]

BLAST of Tan0002440 vs. ExPASy TrEMBL
Match: A0A6J1JQS7 (putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF   L F++ L+ S ALM+PEA   + C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHIACLCFFDCPKN 80

[Close]

BLAST of Tan0002440 vs. ExPASy TrEMBL
Match: A0A6J1EAA9 (putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-11
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF   L F++ L+ S ALM+PEA   + C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHVACLCFFDCPKN 80

[Close]

BLAST of Tan0002440 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.5e-07
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 4  FSSSLFFIVFLIFSGALMVPE-AVHGAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSECVP 63
          +SS +  I   I    ++VP+ A+   +C++KLY+ GC   DC Q+C +K+ ++S +C+P
Sbjct: 5  YSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIP 64

Query: 64 IPPIPYNYVCYCFYDCAAN 81
            P    Y CYCFY+C  N
Sbjct: 65 TDPGQTIYACYCFYNCGQN 83

[Close]

BLAST of Tan0002440 vs. TAIR 10
Match: AT4G29290.1 (low-molecular-weight cysteine-rich 26 )

HSP 1 Score: 47.4 bits (111), Expect = 6.4e-06
Identity = 31/79 (39.24%), Postives = 39/79 (49.37%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYEG--CVSKDCSQRCQQKYPNSSSE 60
          MAK S S FFI+ L+FS  LMV E   G +C   + +G  C   DC   C   Y N   +
Sbjct: 1  MAKLSCSYFFILMLVFSALLMV-ECDEGKRCHTTIDKGNFCDLVDCRLSCFSGY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C   P +P    C C Y+C
Sbjct: 61 CFDDPKVPGRSNCGCLYNC 77

[Close]

BLAST of Tan0002440 vs. TAIR 10
Match: AT4G29280.1 (low-molecular-weight cysteine-rich 22 )

HSP 1 Score: 40.4 bits (93), Expect = 7.8e-04
Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 1  MAKFSSSLFFIVFLIFSGALMVPEAVHGAKCEEKLYEG--CVSKDCSQRCQQKYPNSSSE 60
          MAK S S FF++ L+FS   +V +A    +C   ++ G  C   DC Q C  +Y N   +
Sbjct: 1  MAKISCSSFFVLMLVFSVFSLVEKAKGDERCTIIIHPGSPCDPSDCVQYCYAEY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C+   P   +  C C Y+C
Sbjct: 61 CIASKP-GRSANCMCTYNC 77

The following BLAST results are available for this feature:

BLAST of Tan0002440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0F2	9.0e-05	39.24	Putative defensin-like protein 160 OS=Arabidopsis thaliana OX=3702 GN=LCR26 PE=3...	[more]

BLAST of Tan0002440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52439.1	1.1e-23	65.82	hypothetical protein Csa_009048 [Cucumis sativus]	[more]
KGN52438.1	7.8e-14	53.09	hypothetical protein Csa_008032 [Cucumis sativus]	[more]
XP_022990690.1	4.7e-11	46.91	putative defensin-like protein 129 [Cucurbita maxima]	[more]
XP_022923678.1	1.1e-10	46.91	putative defensin-like protein 129 [Cucurbita moschata]	[more]
XP_012090834.1	7.1e-07	43.59	defensin-like protein 156 [Jatropha curcas]	[more]

BLAST of Tan0002440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU45	5.3e-24	65.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1	[more]
A0A0A0KS76	3.8e-14	53.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1	[more]
A0A6J1JQS7	2.3e-11	46.91	putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 P...	[more]
A0A6J1EAA9	5.1e-11	46.91	putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316...	[more]
A0A5A7THQ7	4.5e-07	37.97	S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O...	[more]

BLAST of Tan0002440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29290.1	6.4e-06	39.24	low-molecular-weight cysteine-rich 26	[more]
AT4G29280.1	7.8e-04	34.18	low-molecular-weight cysteine-rich 22	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 29..77 e-value: 4.0E-8 score: 33.6

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002440.1	Tan0002440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044419	biological process involved in interspecies interaction between organisms