Tan0002382 (gene) Snake gourd v1

Overview


Name	Tan0002382
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 2785759 .. 2785989 (-)
RNA-Seq Expression	Tan0002382
Synteny	Tan0002382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAGAAAGGAGTGGAGCCCAAAGGAAGTGAGAAGGAGACAGAGATAGTCGCAGATCGGTAGGTCCTACGAAGAAGAAAATCGAGAGAAAACAAATCAACCACGATGTAAAACAATCCGCCGGAGAAACTGTGCAGCGGCCGAAACGCCCCCACGTCGGCGACCACTCTTAAATATCGCCGACGGTTTTCCCAGCGTGGCTTTGCCTCGATTATTTCAAGAAAATGA

mRNA sequence

ATGATGGAGAAAGGAGTGGAGCCCAAAGGAAGTGAGAAGGAGACAGAGATAAAACTGTGCAGCGGCCGAAACGCCCCCACGTCGGCGACCACTCTTAAATATCGCCGACGGTTTTCCCAGCGTGGCTTTGCCTCGATTATTTCAAGAAAATGA

Coding sequence (CDS)

ATGATGGAGAAAGGAGTGGAGCCCAAAGGAAGTGAGAAGGAGACAGAGATAAAACTGTGCAGCGGCCGAAACGCCCCCACGTCGGCGACCACTCTTAAATATCGCCGACGGTTTTCCCAGCGTGGCTTTGCCTCGATTATTTCAAGAAAATGA

Protein sequence

MMEKGVEPKGSEKETEIKLCSGRNAPTSATTLKYRRRFSQRGFASIISRK

Homology

[Close]

BLAST of Tan0002382 vs. NCBI nr
Match: KGN56588.1 (hypothetical protein Csa_009583 [Cucumis sativus])

HSP 1 Score: 53.5 bits (127), Expect = 6.0e-04
Identity = 37/73 (50.68%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 1  MMEKGVEP-------------KGSEKETEIKL-------------CSGRNAPTSATTLKY 48
          MMEKGVEP             +  E+E E K              CSG NAPTSATTLKY
Sbjct: 1  MMEKGVEPNEVRRRQRWSQIGRSYEEENERKSIDHDVKQPRRRKPCSGGNAPTSATTLKY 60

[Close]

BLAST of Tan0002382 vs. ExPASy TrEMBL
Match: A0A0A0L4D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125550 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.9e-04
Identity = 37/73 (50.68%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 1  MMEKGVEP-------------KGSEKETEIKL-------------CSGRNAPTSATTLKY 48
          MMEKGVEP             +  E+E E K              CSG NAPTSATTLKY
Sbjct: 1  MMEKGVEPNEVRRRQRWSQIGRSYEEENERKSIDHDVKQPRRRKPCSGGNAPTSATTLKY 60

The following BLAST results are available for this feature:

BLAST of Tan0002382 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002382 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56588.1	6.0e-04	50.68	hypothetical protein Csa_009583 [Cucumis sativus]	[more]

BLAST of Tan0002382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4D2	2.9e-04	50.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G125550 PE=4 SV=1	[more]

BLAST of Tan0002382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002382.1	Tan0002382.1	mRNA