Tan0002341 (gene) Snake gourd v1

Overview
NameTan0002341
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRibosomal protein L2
LocationContig00127: 125509 .. 127035 (+)
RNA-Seq ExpressionTan0002341
SyntenyTan0002341
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTACGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACTGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCGAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGATAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCAGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCGGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCGTGTGACCCGTTGGTCCTAAGCAATGTCTTGCGCGAAGCGACCCACCTAGAAAAGCTCGCCTTTATGTTAGGGGGGCACTAAAATGGAACTTCGATCGGATGCGGGTATCCAATCCCGCCGCTGAGATGTCAAGCGGATTCCTGGGCGTTGACGAATGGCCGGCCACCTTTTACGTTAGAAGAGCAAAAGGCCCGGGGCATAGCTGGATGAACCAATGTGAATGAGTGTAAGCTTCGTGACCCGAACACGATTGGTGCTGACCACACTAGGTGCTACCGTGGTAGCAAGAGAGGCCAGGCGGTGACAATTGAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGAATGAAGGGGAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGGCCGGCAGAAAGCTCGCTAA

mRNA sequence

ATGATTACGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACTGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCGAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGATAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCAGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCGGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGAATGAAGGGGAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGGCCGGCAGAAAGCTCGCTAA

Coding sequence (CDS)

ATGATTACGATCTCGACAATGAGACAAAGCCAAGAGGGGAGAGCACTTAGACAATTCACTTTGAGTACAGGGAAGTCCGCTGGTAGGAATTCCTCAGGGCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCAGCGAAGAATTGATCTGAAACGAAGCACTTCGTCTATGGGCATTGTAGAAAGAATAGAATATGACCCTAATCGTTCTTCTCGGATCGCTCCAGTACGATGGATCGAGGGGGTCCGCCAGAGGAAATGCAAGACGATAGAGGAGTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGACCACCATCCGCGGCCTATTTTCGTTCTCTTCCCCGCCCGGGAAGGTGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACTGATGGCGGCTTATGTAGTGGTCGGCCTTCCTACCAGGATGCCTCCTTGGTCGAAGAGCCCCTTTACTAGTACTAGTAAGGGCGCAGGAAGCAAAAAAACTTGCGCGAAGGACGTTTTCTTCTCTGCCTTCTCCTCTCAAAAGACCAAGGGAGAGACTGCATCCCTTTCCTTCGGTAGCTCTTTTGGTTTCCCAAGGATAGCGGTAGCTGGGGCAAAGCCCGCTTTCTTCGCTCCGCGAATGAGAGATAAACTCAGAGGAAAAAACACGTTCTCTCTTTGCGAGGTCCGAAAGTGGAGAACGCATAGCATTCTCTGGGCACATAGGATTAAACGTAAAGCAGCGCTTTCTTGGCGGAGTTTTAGGCGGCAAGAGACTTTAGGGCTTGTTGGAGGTGCGGAGCATAACGAATCGAAACCAGAGACGGATCAAGGTAGCTTGCCTGCCAAGCCGATAGGCGAAGGGCCGAAGGATGGAGCGTGCAAAGTCAATCGTGCACCTGTCCTCACATCCAAACATCTGATTGGGGAACGGGGCAACGCCCATGAAGCTCCGGCGGAAAGGGAAGGCCTGCCAGGCCGTATGCCCATGGGTGCAGGATTCTTCGAAAAAGCGCGGGCTGACTCGGAGACCTGGGACCTTGGCTTAGCAACGAATGAAGGGGAGCTCTTCGAGCTTTCTCCGCCAGTGGCTTATGTAGTGGTCGGCCGGCAGAAAGCTCGCTAA

Protein sequence

MITISTMRQSQEGRALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRRIDLKRSTSSMGIVERIEYDPNRSSRIAPVRWIEGVRQRKCKTIEEFAPPRKILEPTTTTIRGLFSFSSPPGKVDQRKVACFSPGLMAAYVVVGLPTRMPPWSKSPFTSTSKGAGSKKTCAKDVFFSAFSSQKTKGETASLSFGSSFGFPRIAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWRSFRRQETLGLVGGAEHNESKPETDQGSLPAKPIGEGPKDGACKVNRAPVLTSKHLIGERGNAHEAPAEREGLPGRMPMGAGFFEKARADSETWDLGLATNEGELFELSPPVAYVVVGRQKAR
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P933112.6e-12680.0060S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 ... [more]
P0C8K63.6e-8857.7960S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=... [more]
Q2F9693.6e-8857.7960S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G... [more]
P928123.6e-8857.7960S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947... [more]
P268591.3e-3244.8860S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPL2... [more]
Match NameE-valueIdentityDescription
XP_023521202.15.2e-18587.09LOW QUALITY PROTEIN: uncharacterized protein LOC111784913 [Cucurbita pepo subsp.... [more]
XP_042504770.15.2e-16984.35LOW QUALITY PROTEIN: 60S ribosomal protein L2, mitochondrial [Macadamia integrif... [more]
OVA06704.11.6e-16579.46Ribosomal protein L2 [Macleaya cordata][more]
XP_027185391.15.6e-16383.70LOW QUALITY PROTEIN: uncharacterized protein LOC113783450 [Coffea eugenioides][more]
YP_009913619.11.8e-16198.65ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa ... [more]
Match NameE-valueIdentityDescription
A0A200Q8E87.6e-16679.46Ribosomal protein L2 OS=Macleaya cordata OX=56857 GN=BVC80_6573g1 PE=3 SV=1[more]
A0A7D5XZ328.7e-16298.65Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1[more]
D5I3991.1e-15998.31Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1[more]
D5I3E98.2e-15294.59Ribosomal protein L2 OS=Cucurbita pepo OX=3663 GN=rpl2 PE=3 SV=1[more]
A0A5C2I4L32.6e-15092.33Ribosomal protein L2 OS=Ilex pubescens OX=185543 GN=rpl2 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G07715.11.3e-14976.28Nucleic acid-binding, OB-fold-like protein [more]
ATMG00560.11.8e-12780.00Nucleic acid-binding, OB-fold-like protein [more]
ATCG00830.11.4e-0745.90ribosomal protein L2 [more]
ATCG01310.11.4e-0745.90ribosomal protein L2 [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 28..104
e-value: 1.1E-18
score: 78.1
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 9..289
NoneNo IPR availableGENE3D2.40.50.140coord: 11..90
e-value: 4.2E-23
score: 83.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..296
NoneNo IPR availablePANTHERPTHR13691:SF4460S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL-RELATEDcoord: 9..289
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 28..80
e-value: 1.0E-13
score: 51.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 7..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002341.1Tan0002341.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006412 translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome