Tan0002174 (gene) Snake gourd v1

Overview


Name	Tan0002174
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L18a-like protein
Location	LG01: 107070130 .. 107072575 (+)
RNA-Seq Expression	Tan0002174
Synteny	Tan0002174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAATACAACCCACTCGATCATTCTAAATTCTGATCCATTTCGGTCTTCGGGTCTCTGTTTCTGCAAAGAGAGAGAAAATGAGCCAGGAAGACAAATCCGCCGCCGTGGGAGTCGTCGTCCACCACCATCATGAATCCAATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCTAACTATCCTCCCGTCGGATTTCCACAGCCTACTCGCCCGCCCGGTGCCTCCGACTCTTACGATCCTTCTCAATCTCAGCCCTACGCTCAGGGCTATCAAGCTGTCCCTGGTAGCCTCTTCTTCCTCAAATTTCCTTAACTGTTAATCTGGTGTTTGTTGTTTCTTTTGACTACTGTGCGATTTCTTCGATCTTAAGCTTTTCCGTTTGACTTGAACTACTGGCCTTTGTTGCTCGGTCAAATACCTTGAATTGAACTCTAGTTAAGTTGATCTTATCACTTGAATAGCTTATGATCACAAAATTATGATCTAATGGACAGTTTTGTGCCAGGCATGGATGAGTGTTCCCTAGTTTAGTTGTCATATATTTTGCTCTCTGTGTTTCAATTCACATTTCACTTGGAGCTTCATAGTAGTACCAGATGTTTGAGATTAGATCCTGCAGTTTCTTGTTCTGTGAGTGTGCTTTACATTGGCGTCTGCTTCGAAGTTTATAATTCAAAATTGAAAAATAATTAGGGTAGTCAGTTTCCAATTCGAAAAAAGGGCAGAGTAGGAAGCCACTCTTAAGTCATGATTAACAACGATCACAATAATATATTATAGTTTGTAAGTGTTGTTTAATTTGGAACTTTTTTGTTATATTTATAACTAAATCTCCACAAAAAGTTCGGCAGGATTCTTATTTAATAGCCAGGAGATTCTCTTTTGATTTTTGTAATACTTGATTTTAGCATTCTGAAATTGGCTGTCATTGTTTTATATATTTGGGTGCAACTTTTTTGTTATTTCTCTCATGTTCGTCACTATATCGTATTGACCCTTTGTCTCTCTCTCTTGAAGGAATGCCATTTGAGATTTGATGTTATACTATTATATTCTGTGCAGTATCATTATACTGTCTGTAATTTCGTGTAACTTTTTTCTAATTGGCTGTGATTAGCATATCAGTATAAAGACATAAGTAATAGCTCAGTTTCTAAACTTATGAATTTCTTTCCAGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTAAGTTGTCATTGAAATTACACTAGCATTGTCATCATAAATAAGCTAGGTTATATCATTATGTCCACAATAAGCATTTTAAATGTTCAGGGTTACATGGTCAATGAGTTATCAATTCAGAAGAAGACTAGAATGCTACAGCTTCCATATTATGAACTAAAACCAGTCAGCTTCTGGATTGGAACAATAGAATTGCTAGTTGTGTCCCGCCTACTCTTTATATCTTGCTATTTAAATTGTTTGCCCAAATTTGTGTCTATATATGTGTTCTTCAGGTTCATTATTGGTTTCTTCCTTGCTGGTATCCCATGGTATGCTGGGGCAATTCTTGTACTATGTGGCAGGGTAGATTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGTGAGTAACTTTTATTCATTGTTATTTTTGACTTCTTCAGCTTCATGATGATGTTCTTATATCTTCAATCTAGTTTTGCAATTTGATTTCATCACAAGAAGTGATTTTTCTGTTGGTACTTTTTTGCAATTTGCCAAAAGATTTATTGGGTTGTGTTGGGTAGGAGGCCATCGGTAGTAGTAGTAGGTGGTTGTAATTTGTAAACAGCTAGAACTTGTCATTATTCTCTCAGTTTTTAGTATCTTGTGCTCTGTCTTGACAGTAATTTTATCTTTATCTTTCCGTTGAATTAAACTGGTTTATTTACAATTTCTTTTAAAACAAAATTGTTATGAAATGAGCTACTAAAATTCATCTATGGTGAACAAGTTTTTTTCTTTTTGAAAAAATGCTAATTTTCTTAACATTGAATGCTAATAATATTATGTTGTATATCAGGCTATTCTTGTCACCGTTGCGATTATTTTCGGTGCAACAAAGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAATATTGTATAGTTTGCAAATATATATGAACAACACAATCCACGATTTCCGAGCACTACATCTTCAAGCTAGTTCCATTGAAACCTGTATTTGTGAGAGCATAGATATTGCTTAGCGGTTGTTTCCCATGTTGTGCCTAAGAAGTGTAGCATTCTGCAAAAGCATGTTATTTATTTTTTCTTATGTGTCCATATATTTGTTATGACTATATATCCGAAACTCGGCTGTCTGAATGTACTTATCCTTTGGTAAATATATTGGTTCTTTGTTGTTTGGAATAA

mRNA sequence

ATACAATACAACCCACTCGATCATTCTAAATTCTGATCCATTTCGGTCTTCGGGTCTCTGTTTCTGCAAAGAGAGAGAAAATGAGCCAGGAAGACAAATCCGCCGCCGTGGGAGTCGTCGTCCACCACCATCATGAATCCAATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCTAACTATCCTCCCGTCGGATTTCCACAGCCTACTCGCCCGCCCGGTGCCTCCGACTCTTACGATCCTTCTCAATCTCAGCCCTACGCTCAGGGCTATCAAGCTGTCCCTGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTCATTATTGGTTTCTTCCTTGCTGGTATCCCATGGTATGCTGGGGCAATTCTTGTACTATGTGGCAGGGTAGATTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTATTCTTGTCACCGTTGCGATTATTTTCGGTGCAACAAAGGAAGCTGATGTCTGGTAACCAATCCTAAACTAAAAATATTGTATAGTTTGCAAATATATATGAACAACACAATCCACGATTTCCGAGCACTACATCTTCAAGCTAGTTCCATTGAAACCTGTATTTGTGAGAGCATAGATATTGCTTAGCGGTTGTTTCCCATGTTGTGCCTAAGAAGTGTAGCATTCTGCAAAAGCATGTTATTTATTTTTTCTTATGTGTCCATATATTTGTTATGACTATATATCCGAAACTCGGCTGTCTGAATGTACTTATCCTTTGGTAAATATATTGGTTCTTTGTTGTTTGGAATAA

Coding sequence (CDS)

ATGAGCCAGGAAGACAAATCCGCCGCCGTGGGAGTCGTCGTCCACCACCATCATGAATCCAATTCCGGCCACCCTCACTACGGAACTTTCCAAGGCGTCGCTAACTATCCTCCCGTCGGATTTCCACAGCCTACTCGCCCGCCCGGTGCCTCCGACTCTTACGATCCTTCTCAATCTCAGCCCTACGCTCAGGGCTATCAAGCTGTCCCTGGATATGCTATTGTTGAAGGAAGACCAGTGAGAGAGCGGCGCCTTCCTTGCTGTGGTATTGGCATTGGGTGGTTCCTGTTCATTATTGGTTTCTTCCTTGCTGGTATCCCATGGTATGCTGGGGCAATTCTTGTACTATGTGGCAGGGTAGATTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTATTCTTGTCACCGTTGCGATTATTTTCGGTGCAACAAAGGAAGCTGATGTCTGGTAA

Protein sequence

MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEADVW

Homology

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BLAST of Tan0002174 vs. ExPASy Swiss-Prot
Match: Q8L9S1 (60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g29970 PE=2 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-30
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACS 145
            +VE RP+ E  LPCCG+G+GWFLFI+GF   GIPWY GA +VL   VD+REK GYVACS
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 139

Query: 146 IAAILVTVAIIFGATKEADVW 154
           IA+++  +A++ G T + ++W
Sbjct: 140 IASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of Tan0002174 vs. NCBI nr
Match: XP_038896754.1 (60S ribosomal protein L18a-like protein [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 6.8e-75
Identity = 139/153 (90.85%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MSQEDKSAAVGVVVHHHHESNSGHP YGTFQGVANYPPVGFPQPTRPPG SDS DPSQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSGHPLYGTFQGVANYPPVGFPQPTRPPGVSDSDDPSQYQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQAVPGY IVEGRPVRERRLPCCGIGIGWFLFIIGFFLA IPWYAGAIL+LCGRV
Sbjct: 61  DYAHGYQAVPGYGIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           DYREKPGYVAC IAA+L TVAIIFGAT+EAD W
Sbjct: 121 DYREKPGYVACLIAAVLATVAIIFGATREADDW 153

[Close]

BLAST of Tan0002174 vs. NCBI nr
Match: XP_008452440.1 (PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo] >KAA0064318.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa] >TYK20268.1 60S ribosomal protein L18a-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 4.4e-74
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MSQEDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIGFFLA IPWYAGAIL+LCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           DYREKPGYVACSIAA++ T+AIIFGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Tan0002174 vs. NCBI nr
Match: XP_022135554.1 (60S ribosomal protein L18a-like protein [Momordica charantia])

HSP 1 Score: 283.9 bits (725), Expect = 8.3e-73
Identity = 134/154 (87.01%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MSQEDK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQS
Sbjct: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60

Query: 61  QPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGR 120
           QPYA  YQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFF+ GIPWYAGAI++LCGR
Sbjct: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120

Query: 121 VDYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           VDYREKPGYVAC+IAAIL T+A+I G TK  DVW
Sbjct: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 154

[Close]

BLAST of Tan0002174 vs. NCBI nr
Match: XP_004146004.1 (60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN55009.1 hypothetical protein Csa_012352 [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 7.1e-72
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ Q
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIGFFLA IPWYAGAIL++CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           DYREKPGYVACSIAA++ TVAIIFGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Tan0002174 vs. NCBI nr
Match: XP_023536200.1 (60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.7 bits (670), Expect = 2.0e-66
Identity = 128/153 (83.66%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MSQEDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIGF L    WY GAIL+LCGRV
Sbjct: 61  QYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
            YREKPGYVACSIAA++ TVAIIFGATK ADVW
Sbjct: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 152

[Close]

BLAST of Tan0002174 vs. ExPASy TrEMBL
Match: A0A5D3D9U1 (60S ribosomal protein L18a-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004080 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MSQEDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIGFFLA IPWYAGAIL+LCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           DYREKPGYVACSIAA++ T+AIIFGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Tan0002174 vs. ExPASy TrEMBL
Match: A0A1S3BUZ1 (60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103493475 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74
Identity = 137/153 (89.54%), Postives = 142/153 (92.81%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MSQEDKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPV FPQPTRPPG SDS DPSQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHESNSAHPHYGTFQGVANYPPVEFPQPTRPPGLSDSDDPSQYQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQAVPGYAIVEGRPVRE  LPCCGIGIGWFLFIIGFFLA IPWYAGAIL+LCGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPPLPCCGIGIGWFLFIIGFFLAAIPWYAGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           DYREKPGYVACSIAA++ T+AIIFGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATLAIIFGATREADVW 153

[Close]

BLAST of Tan0002174 vs. ExPASy TrEMBL
Match: A0A6J1C1R6 (60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111007453 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 4.0e-73
Identity = 134/154 (87.01%), Postives = 142/154 (92.21%), Query Frame = 0


Query: 1   MSQEDK-SAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQS 60
           MSQE+K +AA GVVVHHHHESNSGHP YGTFQGVANYPPVGFPQP RPPGASDSYDPSQS
Sbjct: 1   MSQEEKAAAAAGVVVHHHHESNSGHPQYGTFQGVANYPPVGFPQPIRPPGASDSYDPSQS 60

Query: 61  QPYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGR 120
           QPYA  YQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFF+ GIPWYAGAI++LCGR
Sbjct: 61  QPYAHAYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFIVGIPWYAGAIVILCGR 120

Query: 121 VDYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           VDYREKPGYVAC+IAAIL T+A+I G TK  DVW
Sbjct: 121 VDYREKPGYVACTIAAILGTLALILGVTKGVDVW 154

[Close]

BLAST of Tan0002174 vs. ExPASy TrEMBL
Match: A0A0A0L1Y0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621210 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.4e-72
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MS++DKSAAVGVVVHHHHESNS HPHYGTFQGVANYPPVGF  PTR PG  DS DPSQ Q
Sbjct: 1   MSEQDKSAAVGVVVHHHHESNSPHPHYGTFQGVANYPPVGFSHPTRLPGVPDSDDPSQYQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQAVPGYAIVEGRPVRE RLPCCGIGIGWFLFIIGFFLA IPWYAGAIL++CGRV
Sbjct: 61  HYAHGYQAVPGYAIVEGRPVREPRLPCCGIGIGWFLFIIGFFLAAIPWYAGAILIICGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           DYREKPGYVACSIAA++ TVAIIFGAT+EADVW
Sbjct: 121 DYREKPGYVACSIAAVIATVAIIFGATREADVW 153

[Close]

BLAST of Tan0002174 vs. ExPASy TrEMBL
Match: A0A6J1INF5 (60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111477112 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.3e-66
Identity = 128/153 (83.66%), Postives = 131/153 (85.62%), Query Frame = 0


Query: 1   MSQEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPPVGFPQPTRPPGASDSYDPSQSQ 60
           MSQEDKSAAVGVVVHHHHE N GHPHYGTFQGVANYPPVGFPQPTRPPG SD  D SQ Q
Sbjct: 1   MSQEDKSAAVGVVVHHHHEPNPGHPHYGTFQGVANYPPVGFPQPTRPPGVSDFDDRSQPQ 60

Query: 61  PYAQGYQAVPGYAIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRV 120
            YA GYQ V GYAIVEGRPVRE RLPCCGIG GWFLFIIGF L    WY GAIL+LCGRV
Sbjct: 61  NYAHGYQTVTGYAIVEGRPVREPRLPCCGIGYGWFLFIIGFILPA-TWYIGAILILCGRV 120

Query: 121 DYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
            YREKPGYVACSIAA++ TVAIIFGATK ADVW
Sbjct: 121 HYREKPGYVACSIAAVIATVAIIFGATKGADVW 152

[Close]

BLAST of Tan0002174 vs. TAIR 10
Match: AT1G17080.1 (Ribosomal protein L18ae family )

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-44
Identity = 90/160 (56.25%), Postives = 108/160 (67.50%), Query Frame = 0


Query: 3   QEDKSAAVGVVVHHHHESNSGHPHYGTFQGVANYPP-------VGFPQPTRPPGASDSYD 62
           +EDKS           E  + H  YGTFQGV+NYPP        GFPQP+ PPG  DS  
Sbjct: 5   EEDKSKGFA------SEEGNQHHQYGTFQGVSNYPPPQNSAPVTGFPQPSAPPGVYDSGA 64

Query: 63  PSQSQPYAQGYQAVPGY-AIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAIL 122
           P     YA GYQ VP +  + EGRPVR+RRLPCCGIG+GWFLFI+GFFL  IPWY G  +
Sbjct: 65  PY----YAHGYQTVPVHGGVAEGRPVRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFI 124

Query: 123 VLCG-RVDYREKPGYVACSIAAILVTVAIIFGATKEADVW 154
           ++ G R+DYREKPGY+AC+IAAIL T+A+I G +K AD W
Sbjct: 125 MMFGRRIDYREKPGYIACTIAAILATIAVILGVSKGADDW 154

[Close]

BLAST of Tan0002174 vs. TAIR 10
Match: AT1G53560.1 (Ribosomal protein L18ae family )

HSP 1 Score: 154.8 bits (390), Expect = 5.4e-38
Identity = 74/139 (53.24%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 27  YGTFQGVANYPP------------VGFPQPTRPPGASDSYDPSQSQPYAQGYQAVPGYAI 86
           YGTFQGV  YPP            +G PQP+ PPG S  +D S  Q Y Q +Q V GY +
Sbjct: 16  YGTFQGVPTYPPPSYPHPPSHHPVIGIPQPSPPPG-SPHHDISVHQ-YIQEHQTVAGYPV 75

Query: 87  VEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIA 146
            +GRP R+ RLPCCG+G+GWFLFIIGF L  IPWY G  +++C R+D REKPGYVAC+IA
Sbjct: 76  SQGRPARQNRLPCCGLGLGWFLFIIGFLLGAIPWYVGVFILVCARIDPREKPGYVACTIA 135

Query: 147 AILVTVAIIFGATKEADVW 154
           A++ T+ I+FG      VW
Sbjct: 136 AVVATITIVFGVMGGRGVW 152

[Close]

BLAST of Tan0002174 vs. TAIR 10
Match: AT1G29970.1 (60S ribosomal protein L18A-1 )

HSP 1 Score: 134.4 bits (337), Expect = 7.6e-32
Identity = 71/141 (50.35%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACS 145
            +VE RP+ E  LPCCG+G+GWFLFI+GF   GIPWY GA +VL   VD+REK GYVACS
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 139

Query: 146 IAAILVTVAIIFGATKEADVW 154
           IA+++  +A++ G T + ++W
Sbjct: 140 IASVVYLIAVMLGMTGDINIW 158

[Close]

BLAST of Tan0002174 vs. TAIR 10
Match: AT1G29970.2 (60S ribosomal protein L18A-1 )

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-27
Identity = 67/122 (54.92%), Postives = 78/122 (63.93%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGIGWFLFIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACS 135
            +VE RP+ E  LPCCG+G+GWFLFI+GF   GIPWY GA +VL   VD+REK GYVACS
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACS 139

[Close]

BLAST of Tan0002174 vs. TAIR 10
Match: AT1G29970.3 (60S ribosomal protein L18A-1 )

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-25
Identity = 71/183 (38.80%), Postives = 91/183 (49.73%), Query Frame = 0


Query: 26  HYGTFQGVANY----PPVGFPQPTRP----PGASDSYDPSQSQ----PYAQGYQ-AVPGY 85
           +YGTFQGVAN+    PP  F QP  P    PG   +Y   Q       YAQG+   VP Y
Sbjct: 20  YYGTFQGVANFPTPTPPPQFMQPQHPITTFPG--HAYQNLQGHGGGVNYAQGFPVVVPDY 79

Query: 86  AIVEGRPVRERRLPCCGIGIGWFL------------------------------------ 145
            +VE RP+ E  LPCCG+G+GWFL                                    
Sbjct: 80  TVVEVRPMIEHELPCCGLGMGWFLSKLQKLRFMVVGNSSLLSWNLFVSSEILDELIASWN 139

Query: 146 ------FIIGFFLAGIPWYAGAILVLCGRVDYREKPGYVACSIAAILVTVAIIFGATKEA 154
                 FI+GF   GIPWY GA +VL   VD+REK GYVACSIA+++  +A++ G T + 
Sbjct: 140 QYKKSVFIMGFLFGGIPWYLGAFIVLVTSVDHREKAGYVACSIASVVYLIAVMLGMTGDI 199

The following BLAST results are available for this feature:

BLAST of Tan0002174 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L9S1	1.1e-30	50.35	60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana OX=3702 GN=At1g2...	[more]

BLAST of Tan0002174 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896754.1	6.8e-75	90.85	60S ribosomal protein L18a-like protein [Benincasa hispida]	[more]
XP_008452440.1	4.4e-74	89.54	PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo] >KAA0064318.1 ...	[more]
XP_022135554.1	8.3e-73	87.01	60S ribosomal protein L18a-like protein [Momordica charantia]	[more]
XP_004146004.1	7.1e-72	86.93	60S ribosomal protein L18a-like protein [Cucumis sativus] >KGN55009.1 hypothetic...	[more]
XP_023536200.1	2.0e-66	83.66	60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0002174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9U1	2.1e-74	89.54	60S ribosomal protein L18a-like protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BUZ1	2.1e-74	89.54	60S ribosomal protein L18a-like protein OS=Cucumis melo OX=3656 GN=LOC103493475 ...	[more]
A0A6J1C1R6	4.0e-73	87.01	60S ribosomal protein L18a-like protein OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A0A0L1Y0	3.4e-72	86.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G621210 PE=4 SV=1	[more]
A0A6J1INF5	1.3e-66	83.66	60S ribosomal protein L18a-like protein OS=Cucurbita maxima OX=3661 GN=LOC111477...	[more]

BLAST of Tan0002174 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17080.1	3.0e-44	56.25	Ribosomal protein L18ae family	[more]
AT1G53560.1	5.4e-38	53.24	Ribosomal protein L18ae family	[more]
AT1G29970.1	7.6e-32	50.35	60S ribosomal protein L18A-1	[more]
AT1G29970.2	1.1e-27	54.92	60S ribosomal protein L18A-1	[more]
AT1G29970.3	1.1e-25	38.80	60S ribosomal protein L18A-1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..65
IPR044804	AT1G29970-like	PANTHER	PTHR46631	60S RIBOSOMAL PROTEIN L18A-LIKE	coord: 1..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002174.1	Tan0002174.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome