Tan0002173 (gene) Snake gourd v1

Overview
NameTan0002173
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionDUF4216 domain-containing protein
LocationLG08: 72150564 .. 72151827 (-)
RNA-Seq ExpressionTan0002173
SyntenyTan0002173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGTTATATTGAAGTTTGCGTTAGGCAACAAATTTCATTAAGTTACAAGACTTGGAAAGAAGTTCCCCAAGAACTGAAAGATAAAATTTTTGATACTGTAGAGGTAAGAATAATAGTATTTTCTCCTACAAACTTCTTAATATATAGAGTTATTTAGTCATTTATTATGTGTTTCCTATGTAGATGTCATTTGTGATCGACCATCGGTCCAAAAATGTTATTCTTCAATCAGCGGCAAATAAATTTTGAACATTTCGACACACGTTGTATCAAAAACACATACTTCCATTTAAGGATGAGTCGTCCTTGTTCAAGCATCCTCCACAAAAGTATTCACATATTGATCAAAACCAATCGGAAGCATTTGTGAATGCTAGATTATCGGAAGAATGGGAGGTAAGTACATTATACTTGTTGCTTCTAAAAGTTAGTAAAAAAAGTATTAAAATGATTTAAATTGATTCTATTATGTGATACTGAGCAAAAGTCGTGTACAAAAGGAAAGGAGAGAGAAATGTAAATATAATCATCACATCTCTCGCAAAGGATATGCCAACTTAGCTGAAGAACTAGTGAGTAACATTATTTCTTATAATTTTCCATAAATGAGATTTAATAACTTGTGTGTTTATATAGGAATTGGCGGAAGATCCTTCCACTCGTGCAACCTTATGGATACAGGCACGAAAAGGAAAAAATAATGAATACTTCGATGATGAAACCAAACAATGTGTTGGTCGAATCGTAAGTTAATATGTTTTATTTTTACATGATGTAAAAATGATTCGTAGTTTAAATATCTTATGGTTAGTTTCAATGTCAATCTAAATGGTTGTGACAGGACGAACTAGCTATGAAGAATAAAGGTAAAGACATATTGACCAAGCATTAAGCGCGCTTGCGAACACGAGAGGCGTGTTAGAGGATTAGGTATGTCTGTCAAACCATCAACATACTTTAACATTCCTTGAGTGAAATCAAAATCAAGTAAAGAGTCCGCAACAAAATGTCGTGCTCACCTTCCAAAAAGTCTGCAAGCATAGGCGTGTCATCCAAAAGACAAGGAGGTCATTGACGAGGTGGAAGAAATTTTAGAGGTAATTAGGATTTTGTGGAATTTTTTTTATCATAAGATGTGATATATGATACATTATTCTAACATTCCTTTTTAATTTTTGAAGGGAACTCCATGCCATCTAGCAATAGGATCAAAGGATAATGTGGTTGTTGTAGGCACAATGTACACGTCTGACGCTTAA

mRNA sequence

ATGCAAAGTTATATTGAAGTTTGCGTTAGGCAACAAATTTCATTAAGTTACAAGACTTGGAAAGAAGTTCCCCAAGAACTGAAAGATAAAATTTTTGATACTGTAGAGGAATTGGCGGAAGATCCTTCCACTCGTGCAACCTTATGGATACAGGCACGAAAAGGAAAAAATAATGAATACTTCGATGATGAAACCAAACAATGTGTTGGTCGAATCGTAACATTAAGCGCGCTTGGAACTCCATGCCATCTAGCAATAGGATCAAAGGATAATGTGGTTGTTGTAGGCACAATGTACACGTCTGACGCTTAA

Coding sequence (CDS)

ATGCAAAGTTATATTGAAGTTTGCGTTAGGCAACAAATTTCATTAAGTTACAAGACTTGGAAAGAAGTTCCCCAAGAACTGAAAGATAAAATTTTTGATACTGTAGAGGAATTGGCGGAAGATCCTTCCACTCGTGCAACCTTATGGATACAGGCACGAAAAGGAAAAAATAATGAATACTTCGATGATGAAACCAAACAATGTGTTGGTCGAATCGTAACATTAAGCGCGCTTGGAACTCCATGCCATCTAGCAATAGGATCAAAGGATAATGTGGTTGTTGTAGGCACAATGTACACGTCTGACGCTTAA

Protein sequence

MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEYFDDETKQCVGRIVTLSALGTPCHLAIGSKDNVVVVGTMYTSDA
Homology
[Close]
BLAST of Tan0002173 vs. NCBI nr
Match: KAA0026270.1 (hypothetical protein E6C27_scaffold19G002720 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           MQSYI VCVRQQI ++Y +WKEV  ELKDKI+D + ++  D S R+TLW +ARKG+NN+Y
Sbjct: 403 MQSYIGVCVRQQIPITYNSWKEVLNELKDKIYDCISKIMHDVSYRSTLWKEARKGRNNDY 462

Query: 61  FDDETKQCVGRIVTLSALGTPCHL---AIGSKDN 92
           FDD T+ C  RI  L A      +   A+GSK++
Sbjct: 463 FDDATRDCASRIDELVATHKNEDILTDALGSKEH 496

[Close]
BLAST of Tan0002173 vs. NCBI nr
Match: TYK30686.1 (uncharacterized protein E5676_scaffold343G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-18
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           MQSYI VCVRQQI ++Y +WKEV  ELKDKI+D + ++  D S R+TLW +ARKG+NN+Y
Sbjct: 403 MQSYIGVCVRQQIPITYNSWKEVLNELKDKIYDCISKIMHDVSYRSTLWKEARKGRNNDY 462

Query: 61  FDDETKQCVGRIVTLSALGTPCHL---AIGSKDN 92
           FDD T+ C  RI  L A      +   A+GSK++
Sbjct: 463 FDDATRDCASRIDELVATHKNEDILTDALGSKEH 496

[Close]
BLAST of Tan0002173 vs. NCBI nr
Match: KAA0065358.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-17
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           MQSYI VCV QQI ++Y +WKEVP ELKDKI+D + ++  D S R+TLW +A+KG+NN+Y
Sbjct: 694 MQSYIGVCVWQQIPITYNSWKEVPNELKDKIYDCISKITHDVSYRSTLWKKAQKGRNNDY 753

Query: 61  FDDETKQCVGRIVTLSA 78
           FD+ T+ C  RI  L A
Sbjct: 754 FDEATRDCASRIDELVA 770

[Close]
BLAST of Tan0002173 vs. NCBI nr
Match: TYK08115.1 (hypothetical protein E5676_scaffold265G002840 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELA---------EDPSTRATLWIQ 60
           MQSYI VCVRQQI ++Y +WKEVP ELKDKI+D + + A          D S R+TLW +
Sbjct: 254 MQSYIGVCVRQQIPITYNSWKEVPNELKDKIYDCISDYANLVDELKITHDVSYRSTLWKE 313

Query: 61  ARKGKNNEYFDDETKQCVGRIVTLSA 78
           ARKGKNN+YFDD T+ C  +I  L A
Sbjct: 314 ARKGKNNDYFDDATRDCASQIDELVA 339

[Close]
BLAST of Tan0002173 vs. NCBI nr
Match: KAA0040475.1 (proteasome-associated protein ECM29-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 9.7e-17
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           +QSYI VCVRQQI + Y +WKEV  ELKDKI+D + ++  D   R+TLW +ARKG+NN+Y
Sbjct: 96  IQSYIGVCVRQQIPIIYNSWKEVSNELKDKIYDCISKITHDVFYRSTLWKEARKGRNNDY 155

Query: 61  FDDETKQCVGRIVTLSA 78
           FDD T+ C  RI  L A
Sbjct: 156 FDDATQDCASRIDELVA 172

[Close]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match: A0A5D3E473 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00010 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           MQSYI VCVRQQI ++Y +WKEV  ELKDKI+D + ++  D S R+TLW +ARKG+NN+Y
Sbjct: 403 MQSYIGVCVRQQIPITYNSWKEVLNELKDKIYDCISKIMHDVSYRSTLWKEARKGRNNDY 462

Query: 61  FDDETKQCVGRIVTLSALGTPCHL---AIGSKDN 92
           FDD T+ C  RI  L A      +   A+GSK++
Sbjct: 463 FDDATRDCASRIDELVATHKNEDILTDALGSKEH 496

[Close]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match: A0A5A7SJ90 (DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G002720 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           MQSYI VCVRQQI ++Y +WKEV  ELKDKI+D + ++  D S R+TLW +ARKG+NN+Y
Sbjct: 403 MQSYIGVCVRQQIPITYNSWKEVLNELKDKIYDCISKIMHDVSYRSTLWKEARKGRNNDY 462

Query: 61  FDDETKQCVGRIVTLSALGTPCHL---AIGSKDN 92
           FDD T+ C  RI  L A      +   A+GSK++
Sbjct: 463 FDDATRDCASRIDELVATHKNEDILTDALGSKEH 496

[Close]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match: A0A5A7VCJ3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00150 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           MQSYI VCV QQI ++Y +WKEVP ELKDKI+D + ++  D S R+TLW +A+KG+NN+Y
Sbjct: 694 MQSYIGVCVWQQIPITYNSWKEVPNELKDKIYDCISKITHDVSYRSTLWKKAQKGRNNDY 753

Query: 61  FDDETKQCVGRIVTLSA 78
           FD+ T+ C  RI  L A
Sbjct: 754 FDEATRDCASRIDELVA 770

[Close]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match: A0A5D3C9F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002840 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.1e-17
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELA---------EDPSTRATLWIQ 60
           MQSYI VCVRQQI ++Y +WKEVP ELKDKI+D + + A          D S R+TLW +
Sbjct: 254 MQSYIGVCVRQQIPITYNSWKEVPNELKDKIYDCISDYANLVDELKITHDVSYRSTLWKE 313

Query: 61  ARKGKNNEYFDDETKQCVGRIVTLSA 78
           ARKGKNN+YFDD T+ C  +I  L A
Sbjct: 314 ARKGKNNDYFDDATRDCASQIDELVA 339

[Close]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match: A0A5A7TGD1 (Proteasome-associated protein ECM29-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00090 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.7e-17
Identity = 44/77 (57.14%), Postives = 56/77 (72.73%), Query Frame = 0 

Query: 1   MQSYIEVCVRQQISLSYKTWKEVPQELKDKIFDTVEELAEDPSTRATLWIQARKGKNNEY 60
           +QSYI VCVRQQI + Y +WKEV  ELKDKI+D + ++  D   R+TLW +ARKG+NN+Y
Sbjct: 96  IQSYIGVCVRQQIPIIYNSWKEVSNELKDKIYDCISKITHDVFYRSTLWKEARKGRNNDY 155

Query: 61  FDDETKQCVGRIVTLSA 78
           FDD T+ C  RI  L A
Sbjct: 156 FDDATQDCASRIDELVA 172

The following BLAST results are available for this feature:
BLAST of Tan0002173 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002173 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0026270.12.3e-1853.19hypothetical protein E6C27_scaffold19G002720 [Cucumis melo var. makuwa][more]
TYK30686.12.3e-1853.19uncharacterized protein E5676_scaffold343G00010 [Cucumis melo var. makuwa][more]
KAA0065358.12.6e-1757.14transposase [Cucumis melo var. makuwa][more]
TYK08115.14.4e-1755.81hypothetical protein E5676_scaffold265G002840 [Cucumis melo var. makuwa][more]
KAA0040475.19.7e-1757.14proteasome-associated protein ECM29-like protein isoform X1 [Cucumis melo var. m... [more]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E4731.1e-1853.19DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SJ901.1e-1853.19DUF4216 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VCJ31.2e-1757.14Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00150 PE=... [more]
A0A5D3C9F22.1e-1755.81Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TGD14.7e-1757.14Proteasome-associated protein ECM29-like protein isoform X1 OS=Cucumis melo var.... [more]
BLAST of Tan0002173 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0002173.1Tan0002173.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm