Tan0002001 (gene) Snake gourd v1

Overview


Name	Tan0002001
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG04: 15341650 .. 15342985 (-)
RNA-Seq Expression	Tan0002001
Synteny	Tan0002001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAATCGCTTCCATCAGCGACTCGCCTCCAACAATTCGCCAAGGTTGTCGTCTCCTCCAAAAAGCCCCAATCTCCGATACCGTCCAAGATCCGAGTTTCCCCGCCCGAAACTCCGATCTCCGATACCGTCCGAGTCGTCTCGGAACCGACGAAGCCGAAGAAGATCATGGAGAAGAAGAATCGGATTCCGTTGGCCGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTCCAGGACACGCTCAAGGAGGCCAACGACGGCGATAAGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGTTCCGGCTATGGAGTTCCTAAGGACACTCAGAAGGTTTGCGTTTCTTTTTTTCTTTCTACATTTCGAGTTTTCGTGTCGATTTCTTGCGGATGGATGGATTTGGGGAATTAGAGAGGAAGGTTTGTGAGATTTGTGATGAGAAAAAGAGGTTCAATTGTTTCAATACTTTTAAGTTCATCTGTTGGTTAAGAGAATGTAGATAATTTTGGGATTAAGTTCATTCAAGAATTCCATCCAATTGGTTACAGCCGCTGAGATTATTCTATAGGTTGTGTATGATGAATGAGGTTCTCCTTCGCCCCTCATACCGAATCGAGATAGGGAGAGGCTTTTTGTGTGCATTGTTCTTTGCTACTATGTAGAATATTTGGCTCGAGAGAAATTAGAGGACTTTCAGAGTGGAAGTAAGCAAATTTTTGGTGGAGTTAGAGAGTCCTTAATATTGGTCCTATTGTTGTTAATATTGGTCCTATGGTTGTTTTGCCTCTTATTCTTAATAACTAGAGTCGTTTTTTACCGGCCTAAGCATAATTCAATTGATTACTTATGGGTCGAAGGTTTGAATTCTCACCCCCTCGTGTTATTGAACTAAAAAATAACTAGTGTCTGTTTTTTTTTTTAATTCTTTAGCTTGGTTCTCATGTACAGCTTCTTTTGTGGTGGATTATCTTTTTGTTTTTTTTTCCACAACACTTCATATAGCAACCTAAGTTTCAAAATCCCTTTTGAATATATAAATTTCTCTCGAGGAAAAAATGATCTTATTCTAATGTTTAAATAAATGTCGGGTTTCTGAATTTAGGGGCTTGCTTGGATCAATCGAGCTACGAAAAATCAGGCATCAGTTTGGAAAGTAAGCGATAGACATCCAGGTATTCTAGTCCTCTACATGGTCGGTTGGAATAGTAAGCTTTTGGCATTCCTTCCTAAGTTCCTATTTCCTAACTTTTTTTTTTTTTTTTTTTTTGTAGGTTACTTGGGGACTGATTCAGAGTCAAGCGATAGGAGACTAAAACAAGATGATATCAGATAA

mRNA sequence

ATGGCAAAATCGCTTCCATCAGCGACTCGCCTCCAACAATTCGCCAAGGTTGTCGTCTCCTCCAAAAAGCCCCAATCTCCGATACCGTCCAAGATCCGAGTTTCCCCGCCCGAAACTCCGATCTCCGATACCGTCCGAGTCGTCTCGGAACCGACGAAGCCGAAGAAGATCATGGAGAAGAAGAATCGGATTCCGTTGGCCGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTCCAGGACACGCTCAAGGAGGCCAACGACGGCGATAAGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGTTCCGGCTATGGAGTTCCTAAGGACACTCAGAAGGGGCTTGCTTGGATCAATCGAGCTACGAAAAATCAGGCATCAGTTTGGAAAGTAAGCGATAGACATCCAGGTTACTTGGGGACTGATTCAGAGTCAAGCGATAGGAGACTAAAACAAGATGATATCAGATAA

Coding sequence (CDS)

ATGGCAAAATCGCTTCCATCAGCGACTCGCCTCCAACAATTCGCCAAGGTTGTCGTCTCCTCCAAAAAGCCCCAATCTCCGATACCGTCCAAGATCCGAGTTTCCCCGCCCGAAACTCCGATCTCCGATACCGTCCGAGTCGTCTCGGAACCGACGAAGCCGAAGAAGATCATGGAGAAGAAGAATCGGATTCCGTTGGCCGATGTGGTGTCGGACTGCGTCAAGCGGTGGTTCCAGGACACGCTCAAGGAGGCCAACGACGGCGATAAGGCGATGCAGGTCTTGGTAGGGCAGATGTTTTGTTCCGGCTATGGAGTTCCTAAGGACACTCAGAAGGGGCTTGCTTGGATCAATCGAGCTACGAAAAATCAGGCATCAGTTTGGAAAGTAAGCGATAGACATCCAGGTTACTTGGGGACTGATTCAGAGTCAAGCGATAGGAGACTAAAACAAGATGATATCAGATAA

Protein sequence

MAKSLPSATRLQQFAKVVVSSKKPQSPIPSKIRVSPPETPISDTVRVVSEPTKPKKIMEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWINRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR

Homology

[Close]

BLAST of Tan0002001 vs. NCBI nr
Match: XP_023552657.1 (uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo] >XP_023552666.1 uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.0 bits (663), Expect = 1.3e-65
Identity = 133/158 (84.18%), Postives = 141/158 (89.24%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPI---PSKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKSLP A+RLQQFAKVVVSSKKPQSP      KIRVSPPETPISD+VRV+SEP +PKK 
Sbjct: 1   MAKSLPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME KNRIPLADVVSDC KRWFQDTLKEAN GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           NRA+K QASVWK SDRHP YL TDSESSDRR+K+DDIR
Sbjct: 121 NRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR 158

[Close]

BLAST of Tan0002001 vs. NCBI nr
Match: XP_022941871.1 (uncharacterized protein LOC111447103 [Cucurbita moschata] >XP_022941872.1 uncharacterized protein LOC111447103 [Cucurbita moschata] >KAG6599959.1 hypothetical protein SDJN03_05192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 258.5 bits (659), Expect = 3.8e-65
Identity = 132/158 (83.54%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPI---PSKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKS P A+RLQQFAKVVVSSKKPQSP      KIRVSPPETPISD+VRV+SEP +PKK 
Sbjct: 1   MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME KNRIPLADVVSDC KRWFQDTLKEAN GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           NRA+K QASVWK SDRHP YL TDSESSDRR+K+DDIR
Sbjct: 121 NRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR 158

[Close]

BLAST of Tan0002001 vs. NCBI nr
Match: XP_022996650.1 (uncharacterized protein LOC111491826 [Cucurbita maxima] >XP_022996657.1 uncharacterized protein LOC111491826 [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPIP---SKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKSLP A+RLQQFAKVVVSSKKPQSP P    KIRVSPPETPISD+VRV+SEP +PKK 
Sbjct: 1   MAKSLPLASRLQQFAKVVVSSKKPQSPTPRQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME KNRIPLADVVSDC KRWFQDTLKEAN GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLK 151
           +RA+K QASV K SDRHPGYL TDSESSDRR+K
Sbjct: 121 SRASKYQASVRKASDRHPGYLATDSESSDRRVK 153

[Close]

BLAST of Tan0002001 vs. NCBI nr
Match: KAG7030637.1 (hypothetical protein SDJN02_04674 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.8e-62
Identity = 128/152 (84.21%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPI---PSKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKS P A+RLQQFAKVVVSSKKPQSP      KIRVSPPETPISD+VRV+SEP +PKK 
Sbjct: 1   MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME KNRIPLADVVSDC KRWFQDTLKEAN GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRL 150
           NRA+K QASVWK SDRHP YL TDSESSDRRL
Sbjct: 121 NRASKCQASVWKASDRHPAYLATDSESSDRRL 152

[Close]

BLAST of Tan0002001 vs. NCBI nr
Match: KAG6600897.1 (hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 1.7e-60
Identity = 127/158 (80.38%), Postives = 138/158 (87.34%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPIP---SKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKSLPSAT LQQFAK+ V SKKPQS  P   S+IRVSP ETPI DTVRV+SEP   KK 
Sbjct: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME+KNR+PLADVVSDCVKRWFQDTLKEA+ GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           NRA+K QASV +VSDRHPGYL TDSE S+RR+KQDDIR
Sbjct: 121 NRASKGQASVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Tan0002001 vs. ExPASy TrEMBL
Match: A0A6J1FNN7 (uncharacterized protein LOC111447103 OS=Cucurbita moschata OX=3662 GN=LOC111447103 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.8e-65
Identity = 132/158 (83.54%), Postives = 140/158 (88.61%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPI---PSKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKS P A+RLQQFAKVVVSSKKPQSP      KIRVSPPETPISD+VRV+SEP +PKK 
Sbjct: 1   MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME KNRIPLADVVSDC KRWFQDTLKEAN GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           NRA+K QASVWK SDRHP YL TDSESSDRR+K+DDIR
Sbjct: 121 NRASKYQASVWKASDRHPAYLATDSESSDRRVKRDDIR 158

[Close]

BLAST of Tan0002001 vs. ExPASy TrEMBL
Match: A0A6J1K2L5 (uncharacterized protein LOC111491826 OS=Cucurbita maxima OX=3661 GN=LOC111491826 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.5e-63
Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPIP---SKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKSLP A+RLQQFAKVVVSSKKPQSP P    KIRVSPPETPISD+VRV+SEP +PKK 
Sbjct: 1   MAKSLPLASRLQQFAKVVVSSKKPQSPTPRQKPKIRVSPPETPISDSVRVISEPAQPKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME KNRIPLADVVSDC KRWFQDTLKEAN GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLK 151
           +RA+K QASV K SDRHPGYL TDSESSDRR+K
Sbjct: 121 SRASKYQASVRKASDRHPGYLATDSESSDRRVK 153

[Close]

BLAST of Tan0002001 vs. ExPASy TrEMBL
Match: A0A6J1GZI5 (uncharacterized protein LOC111458931 OS=Cucurbita moschata OX=3662 GN=LOC111458931 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 3.0e-60
Identity = 126/158 (79.75%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPIP---SKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKSLPSAT LQQFAK+ V SKKPQS  P   S+IRVSP ETPI DTVRV+SEP   KK 
Sbjct: 1   MAKSLPSATHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME+KNR+PLADVVSDCVKRWFQDTLKEA+ GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEEKNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           NRA+K QA V +VSDRHPGYL TDSE S+RR+KQDDIR
Sbjct: 121 NRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Tan0002001 vs. ExPASy TrEMBL
Match: A0A6J1JUC7 (uncharacterized protein LOC111488439 OS=Cucurbita maxima OX=3661 GN=LOC111488439 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.6e-59
Identity = 124/158 (78.48%), Postives = 137/158 (86.71%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQSPIP---SKIRVSPPETPISDTVRVVSEPTKPKKI 60
           MAKSLPSA+ LQQFAK+ V SKKPQS  P   S+IRVSP ETPI DTVRV+SEP   KK 
Sbjct: 1   MAKSLPSASHLQQFAKIAVFSKKPQSAAPKPKSRIRVSPSETPIPDTVRVISEP--KKKN 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
           ME++NR+PLADVVSDCVKRWFQDTLKEA+ GD AMQVLVGQMFCSGYGVPKDT+KGLAWI
Sbjct: 61  MEEQNRVPLADVVSDCVKRWFQDTLKEASAGDPAMQVLVGQMFCSGYGVPKDTKKGLAWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           NRA+K QA V +VSDRHPGYL TDSE S+RR+KQDDIR
Sbjct: 121 NRASKGQAPVGEVSDRHPGYLATDSEPSNRRVKQDDIR 156

[Close]

BLAST of Tan0002001 vs. ExPASy TrEMBL
Match: A0A0A0KM25 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218760 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.6e-56
Identity = 119/157 (75.80%), Postives = 133/157 (84.71%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVVVSSKKPQS-PIPSKIRVSPPETPISDTVRVVSEPTKPKKI-M 60
           MAKSLPS  R QQFAK+V SSK PQS P  S+IR SP ETPIS +VRV+SEP K K +  
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPKKSRIRASPSETPISGSVRVISEPNKNKYMEE 60

Query: 61  EKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWIN 120
           E+KNR PLADVVSDCVKRWFQDTLKEA  GD +MQVLVGQMFCSGYGVPK+T+KGLAWI 
Sbjct: 61  EEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKNTKKGLAWIY 120

Query: 121 RATKNQASVWKVSDRHPGYLGTDSESSDRRLKQDDIR 156
           RA+K QASVWK SDRHPGYL TDSESSDRR+K+D++R
Sbjct: 121 RASKYQASVWKASDRHPGYLATDSESSDRRVKRDNVR 157

[Close]

BLAST of Tan0002001 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 1.6e-32
Identity = 57/87 (65.52%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 62  NRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWINRAT 121
           NR+PLA VV DCV+RWFQDTLKEA  GD  MQVLVGQM+CSGYG+PKD  KG AWIN+A+
Sbjct: 76  NRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKAS 135

Query: 122 KNQASVWKVSDRHPGYLGTDSESSDRR 149
           + ++S W+VSD+ PGY  +DS+S+D++
Sbjct: 136 RTRSSAWQVSDKPPGYNASDSDSNDKK 162

[Close]

BLAST of Tan0002001 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 124.8 bits (312), Expect = 6.1e-29
Identity = 52/75 (69.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 62  NRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWINRAT 121
           NR+PLA VV DCV+RWFQDTLKEA  GD  MQVLVGQM+CSGYG+PKD  KG AWIN+A+
Sbjct: 76  NRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKAS 135

Query: 122 KNQASVWKVSDRHPG 137
           + ++S W+VSD+ PG
Sbjct: 136 RTRSSAWQVSDKPPG 150

[Close]

BLAST of Tan0002001 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 115.2 bits (287), Expect = 4.8e-26
Identity = 66/147 (44.90%), Postives = 88/147 (59.86%), Query Frame = 0


Query: 1   MAKSLPSATRLQQFAKVV---VSSKKPQSPIPSKIRVSPPETPISDTVRVVSEPTKPKKI 60
           M KS+P  T L+  +  V   + S KP  PI S           S +    SE T     
Sbjct: 1   MGKSIPVKTGLRGASAAVAGFIKSSKPIRPISS----MDSSDKDSSSTTTTSETT----- 60

Query: 61  MEKKNRIPLADVVSDCVKRWFQDTLKEANDGDKAMQVLVGQMFCSGYGVPKDTQKGLAWI 120
              +  +PL+ VVSDC KRWF+DTL+EA  G+  MQVL+GQM+ SGYGVPKD +KG  WI
Sbjct: 61  ---RRFVPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWI 120

Query: 121 NRATKNQASVWKVSDRHPGYLGTDSES 145
            +A++ ++SVWKV D+ PGY  +DS+S
Sbjct: 121 TKASRVRSSVWKVIDKRPGYNASDSDS 135

The following BLAST results are available for this feature:

BLAST of Tan0002001 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0002001 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023552657.1	1.3e-65	84.18	uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo] >XP_023552666....	[more]
XP_022941871.1	3.8e-65	83.54	uncharacterized protein LOC111447103 [Cucurbita moschata] >XP_022941872.1 unchar...	[more]
XP_022996650.1	1.4e-62	84.31	uncharacterized protein LOC111491826 [Cucurbita maxima] >XP_022996657.1 uncharac...	[more]
KAG7030637.1	1.8e-62	84.21	hypothetical protein SDJN02_04674 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6600897.1	1.7e-60	80.38	hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Tan0002001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNN7	1.8e-65	83.54	uncharacterized protein LOC111447103 OS=Cucurbita moschata OX=3662 GN=LOC1114471...	[more]
A0A6J1K2L5	6.5e-63	84.31	uncharacterized protein LOC111491826 OS=Cucurbita maxima OX=3661 GN=LOC111491826...	[more]
A0A6J1GZI5	3.0e-60	79.75	uncharacterized protein LOC111458931 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A6J1JUC7	2.6e-59	78.48	uncharacterized protein LOC111488439 OS=Cucurbita maxima OX=3661 GN=LOC111488439...	[more]
A0A0A0KM25	1.6e-56	75.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G218760 PE=4 SV=1	[more]

BLAST of Tan0002001 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05360.1	1.6e-32	65.52	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G05360.2	6.1e-29	69.33	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT2G38450.1	4.8e-26	44.90	CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 57..129 e-value: 2.5E-5 score: 26.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..42
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..155
None	No IPR available	PANTHER	PTHR36792	EXPRESSED PROTEIN	coord: 1..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0002001.1	Tan0002001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding