Tan0001884 (gene) Snake gourd v1

Overview


Name	Tan0001884
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA polymerase II transcriptional coactivator KELP-like
Location	LG01: 10514599 .. 10516609 (-)
RNA-Seq Expression	Tan0001884
Synteny	Tan0001884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACGTGTCACGGTCAGTTTTTTTTTATTTCCTTTGCCTGAACCGGAAACATTAGAAAGATATAGGTGAGCTCAGCACAAACTTAGAACAAAACCTTCCCCTAAAATTTCTTCTGCTGAATTCACTCTCTCTACCAGAAATCCACGGAGCGGTAATCGGAGAATTCGGATATGGATTCCGAAATCCAACGCAGAATCGAAGGAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGACGAAATGACCGAGTCCAAGATTCGAGCCCTCGCCTCTAAGGACCTCGATCTCGACCTCTCCAAATCCCCTTACAAGGCTCTGGTCCGCAAGGTTGTGGAATCCTTCCTCCAAGAACGATCTGAAGAACAGCCGCAAGTGGAGCCCGAGGATGCCCCTGGTGCTAAGGACAAGGAGTACGACGACGATGGCGATCTCATTGTTTGTTGGGTTTGTGTTTTTGCCTCTTCTCCTTTCTTGTAGCTTGCGATTTCTTTTTCTTCTATTTATAGTGAAGACATGGCGATTTTATGCTCTGATTATATGTTTTTGGTGTTATTTGGCTCAGTTATCAAGCAAGAGGAAGGTAACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATTAGGGAGTTTTATAGAAAGGATGGGAAAGACCTCCCTACTTCTAAAGGTGATTGTCTATATGCTAATTGCTTGCGTTTGTGAGATTCATAGAGTCTGCAAATTAGGCAAAATTCTAAATGTATATCTGCTTCTTCTTCGAAACAGTGAAGATAGTGAACACTCTACTAGTTTATAATACCTTTTGATGCATTGAGAACTTCTACTGGGTGAAGCAAATGAAAGTAGGAAAAGTCATGCCAAATTAGCAAATGAAAGTAGGAAAAGTCATACCAAATTGACTGTTTATTTCTAACATGTTGGTGAATCAATTATTGGACCAATGGCATGTGGGAAAAGTGGGAAGACAATATTCATTTGAAATATAGGCCAGACACTATATTGAAGTTTAATGAGCAACACATGGCCATACATTTGATTTGTGATGTCTCTGATGTAAGGTTATGTGTGAAGCTTTTACGAGTCTAATTTGAATAAAGTGAGGAACAGGGGTGATGTTTGTAAAACCACTGCATGTTGATCTCTCTTTTCATGAACTTGTACTTTGATCAAACTTATATAATTTTTTCTAACTGTATTGGAAATTTAAGTGGCTAGTTATTTCAGATTAATAACATTGGTGGTACTCTTTTTCCTCAGGAATAAGCTTGACTGAGGAACAGTGGTCCGTCTTTAAAAAGAATGTACCTGCCATAGAAAAAGCTATTAAGAAAATGCAATCACAAACAATGTGAAGTAATCACCTGATGGTTGATGGTTTGAAGCCATGATGCTGTGTGTCTATGGAAGCAAGCTAGATTAATCACCATGAAAAGAGGAGGAAGGGATTTTAGTTTTGGGAATTTCTACGTTTCTTGGTTGCAGAATATTTTGGTATTTTGGTACTTCTGTTTTGAGCCTAGACTGCTGGCGCCAACACTTTAACTTCGAAGTACCTGTAATTTCATAGCATCAAGGTTGACAACTGTGGTACATATTCACCATAACCAGAGCCCCTAAGGATAAATGATCTCTTATCTAATTGTTTTATGCGAAAAAACGTATGACATGAATATGAATATCTGCCGTCTGAGCCATGTCGTTGAACGTTAAATATTTTTGACATTTGATATTGAACTGATTCAATGTTAGGAGATTGCAGTTAGGCTGTGACGAATATATGGGAGGCATTGATGAGTCTTCAGAAGCTCTTTGTGAATTCTGCAGGTTTGTTTTTAGGAATTATTATCATGCTTAAAATTCATACAGCTTGCTGCATTCTGCATAGGATAAGCATCAAAGGGGTTATCTTTTCATGCTTCATTTTTAACCATGGAATGATAACAAGGATGCATTCCAAGTCTCGGAAGTTTTTGTCTATGGCTGTAAAATTTTTTTTCTTCCTTTTTTG

mRNA sequence

CGACGTGTCACGGTCAGTTTTTTTTTATTTCCTTTGCCTGAACCGGAAACATTAGAAAGATATAGGTGAGCTCAGCACAAACTTAGAACAAAACCTTCCCCTAAAATTTCTTCTGCTGAATTCACTCTCTCTACCAGAAATCCACGGAGCGGTAATCGGAGAATTCGGATATGGATTCCGAAATCCAACGCAGAATCGAAGGAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGACGAAATGACCGAGTCCAAGATTCGAGCCCTCGCCTCTAAGGACCTCGATCTCGACCTCTCCAAATCCCCTTACAAGGCTCTGGTCCGCAAGGTTGTGGAATCCTTCCTCCAAGAACGATCTGAAGAACAGCCGCAAGTGGAGCCCGAGGATGCCCCTGGTGCTAAGGACAAGGAGTACGACGACGATGGCGATCTCATTGTTTGTTGGTTATCAAGCAAGAGGAAGGTAACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATTAGGGAGTTTTATAGAAAGGATGGGAAAGACCTCCCTACTTCTAAAGGAATAAGCTTGACTGAGGAACAGTGGTCCGTCTTTAAAAAGAATGTACCTGCCATAGAAAAAGCTATTAAGAAAATGCAATCACAAACAATGTGAAGTAATCACCTGATGGTTGATGGTTTGAAGCCATGATGCTGTGTGTCTATGGAAGCAAGCTAGATTAATCACCATGAAAAGAGGAGGAAGGGATTTTAGTTTTGGGAATTTCTACGTTTCTTGGTTGCAGAATATTTTGGTATTTTGGTACTTCTGTTTTGAGCCTAGACTGCTGGCGCCAACACTTTAACTTCGAAGTACCTGTAATTTCATAGCATCAAGGTTGACAACTGTGGTACATATTCACCATAACCAGAGCCCCTAAGGATAAATGATCTCTTATCTAATTGTTTTATGCGAAAAAACGTATGACATGAATATGAATATCTGCCGTCTGAGCCATGTCGTTGAACGTTAAATATTTTTGACATTTGATATTGAACTGATTCAATGTTAGGAGATTGCAGTTAGGCTGTGACGAATATATGGGAGGCATTGATGAGTCTTCAGAAGCTCTTTGTGAATTCTGCAGGTTTGTTTTTAGGAATTATTATCATGCTTAAAATTCATACAGCTTGCTGCATTCTGCATAGGATAAGCATCAAAGGGGTTATCTTTTCATGCTTCATTTTTAACCATGGAATGATAACAAGGATGCATTCCAAGTCTCGGAAGTTTTTGTCTATGGCTGTAAAATTTTTTTTCTTCCTTTTTTG

Coding sequence (CDS)

ATGGATTCCGAAATCCAACGCAGAATCGAAGGAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGACGAAATGACCGAGTCCAAGATTCGAGCCCTCGCCTCTAAGGACCTCGATCTCGACCTCTCCAAATCCCCTTACAAGGCTCTGGTCCGCAAGGTTGTGGAATCCTTCCTCCAAGAACGATCTGAAGAACAGCCGCAAGTGGAGCCCGAGGATGCCCCTGGTGCTAAGGACAAGGAGTACGACGACGATGGCGATCTCATTGTTTGTTGGTTATCAAGCAAGAGGAAGGTAACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATTAGGGAGTTTTATAGAAAGGATGGGAAAGACCTCCCTACTTCTAAAGGAATAAGCTTGACTGAGGAACAGTGGTCCGTCTTTAAAAAGAATGTACCTGCCATAGAAAAAGCTATTAAGAAAATGCAATCACAAACAATGTGA

Protein sequence

MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM

Homology

[Close]

BLAST of Tan0001884 vs. ExPASy Swiss-Prot
Match: O65155 (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.5e-45
Identity = 99/164 (60.37%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           M+ E + +IE  V  IL  SDM E+TE K+R LAS+ L +DLS+  +KA VR VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  E---RSEEQPQVEPEDAPGAKD-----KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 120
           E   R  E  QV  E+  G KD     KE+DDDGDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 121 REFYRKDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQ 157
           RE+Y+KDGK+LPTSKGISLT+EQWS FKKN+PAIE A+KKM+S+
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESR 164

[Close]

BLAST of Tan0001884 vs. ExPASy Swiss-Prot
Match: O65154 (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-12
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 83  DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDGKDLPTSKGISLTEEQWSVFKKN 142
           D   D++VC +S  R+V+++++ GK  + IREFY KDGK LP  KGISL+ +QW+  + +
Sbjct: 36  DQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNH 95

Query: 143 VPAIEKAIKKM 154
              IEKA+  +
Sbjct: 96  AEDIEKALSDL 106

[Close]

BLAST of Tan0001884 vs. ExPASy Swiss-Prot
Match: Q9FHX8 (Mediator-associated protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g42060 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 30/61 (49.18%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
          +D +++R+I+  V++ILESS++ ++TE K R  AS  LDLDLS+ PYK +V++ VE+FL+
Sbjct: 11 IDKDLRRKIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFLE 70

Query: 61 E 62
          E
Sbjct: 71 E 71

[Close]

BLAST of Tan0001884 vs. ExPASy Swiss-Prot
Match: P53999 (Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9606 GN=SUB1 PE=1 SV=3)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 93  LSSKRKVTIQDFRGKTLVSIREFYR-KDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIK 152
           +   R V+++DF+GK L+ IRE++   +G+  P  KGISL  EQWS  K+ +  I+ A++
Sbjct: 66  IGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVR 125

Query: 153 KM 154
           K+
Sbjct: 126 KL 127

[Close]

BLAST of Tan0001884 vs. ExPASy Swiss-Prot
Match: Q4R947 (Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicularis OX=9541 GN=SUB1 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/62 (40.32%), Postives = 41/62 (66.13%), Query Frame = 0


Query: 93  LSSKRKVTIQDFRGKTLVSIREFYR-KDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIK 152
           +   R V+++DF+GK L+ IRE++   +G+  P  KGISL  EQWS  K+ +  I+ A++
Sbjct: 66  IGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVR 125

Query: 153 KM 154
           K+
Sbjct: 126 KL 127

[Close]

BLAST of Tan0001884 vs. NCBI nr
Match: XP_022931551.1 (RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP_023551821.1 RNA polymerase II transcriptional coactivator KELP-like [Cucurbita pepo subsp. pepo] >KAG6577134.1 RNA polymerase II transcriptional coactivator KELP, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015130.1 RNA polymerase II transcriptional coactivator KELP [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.5 bits (711), Expect = 3.6e-71
Identity = 147/158 (93.04%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDSEIQRRIE AVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ
Sbjct: 1   MDSEIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+QPQ E EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEDQPQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFK NVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. NCBI nr
Match: XP_038878439.1 (RNA polymerase II transcriptional coactivator KELP-like [Benincasa hispida])

HSP 1 Score: 276.2 bits (705), Expect = 1.8e-70
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDSEIQRRIE AVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ
Sbjct: 1   MDSEIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSEEQPQ + +DA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEEQPQDQADDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQ 157
           KDLPT+KGISLTEEQWSVFKKNVPAIEKAIK M+SQ
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMRSQ 156

[Close]

BLAST of Tan0001884 vs. NCBI nr
Match: XP_008451928.1 (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo] >KAA0044928.1 RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa] >TYK16542.1 RNA polymerase II transcriptional coactivator KELP [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 2.6e-69
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDSE QRRIE AVRRILE+SDMDEMTESKIRALASKDLDLDLSKSPYK+LVR VVESFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+QPQ + EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEQQPQDQAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFKKNVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. NCBI nr
Match: XP_022985429.1 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 271.6 bits (693), Expect = 4.4e-69
Identity = 144/158 (91.14%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDS+IQRRIE AVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ
Sbjct: 1   MDSKIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           +RSE+Q Q E EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  KRSEDQLQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFK NVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. NCBI nr
Match: XP_004148989.1 (RNA polymerase II transcriptional coactivator KELP [Cucumis sativus] >KGN53421.1 hypothetical protein Csa_014494 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 3.7e-68
Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDS++QRRIE AVR ILESSDMDEMTESKIRALASKDL LDLSKSPYK+LVR VVESFLQ
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+ P+ +PEDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEQHPEDQPEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFKKNVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. ExPASy TrEMBL
Match: A0A6J1ETY4 (RNA polymerase II transcriptional coactivator KELP-like OS=Cucurbita moschata OX=3662 GN=LOC111437695 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.7e-71
Identity = 147/158 (93.04%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDSEIQRRIE AVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ
Sbjct: 1   MDSEIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+QPQ E EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEDQPQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFK NVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. ExPASy TrEMBL
Match: A0A5A7TPV6 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003580 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDSE QRRIE AVRRILE+SDMDEMTESKIRALASKDLDLDLSKSPYK+LVR VVESFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+QPQ + EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEQQPQDQAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFKKNVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. ExPASy TrEMBL
Match: A0A1S3BS20 (RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo OX=3656 GN=LOC103493081 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.3e-69
Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDSE QRRIE AVRRILE+SDMDEMTESKIRALASKDLDLDLSKSPYK+LVR VVESFLQ
Sbjct: 1   MDSETQRRIEEAVRRILETSDMDEMTESKIRALASKDLDLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+QPQ + EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEQQPQDQAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFKKNVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. ExPASy TrEMBL
Match: A0A6J1JD91 (RNA polymerase II transcriptional coactivator KELP-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111483435 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.1e-69
Identity = 144/158 (91.14%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDS+IQRRIE AVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ
Sbjct: 1   MDSKIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           +RSE+Q Q E EDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  KRSEDQLQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFK NVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. ExPASy TrEMBL
Match: A0A0A0KZW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052710 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.8e-68
Identity = 140/158 (88.61%), Postives = 148/158 (93.67%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           MDS++QRRIE AVR ILESSDMDEMTESKIRALASKDL LDLSKSPYK+LVR VVESFLQ
Sbjct: 1   MDSQLQRRIEEAVRAILESSDMDEMTESKIRALASKDLHLDLSKSPYKSLVRTVVESFLQ 60

Query: 61  ERSEEQPQVEPEDAPGAKDKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120
           ERSE+ P+ +PEDA  AK+KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG
Sbjct: 61  ERSEQHPEDQPEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDG 120

Query: 121 KDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQTM 159
           KDLPT+KGISLTEEQWSVFKKNVPAIEKAIK MQSQ M
Sbjct: 121 KDLPTAKGISLTEEQWSVFKKNVPAIEKAIKNMQSQIM 158

[Close]

BLAST of Tan0001884 vs. TAIR 10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-46
Identity = 99/164 (60.37%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           M+ E + +IE  V  IL  SDM E+TE K+R LAS+ L +DLS+  +KA VR VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  E---RSEEQPQVEPEDAPGAKD-----KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 120
           E   R  E  QV  E+  G KD     KE+DDDGDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 121 REFYRKDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQ 157
           RE+Y+KDGK+LPTSKGISLT+EQWS FKKN+PAIE A+KKM+S+
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESR 164

[Close]

BLAST of Tan0001884 vs. TAIR 10
Match: AT4G10920.2 (transcriptional coactivator p15 (PC4) family protein (KELP) )

HSP 1 Score: 182.6 bits (462), Expect = 2.5e-46
Identity = 99/164 (60.37%), Postives = 123/164 (75.00%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           M+ E + +IE  V  IL  SDM E+TE K+R LAS+ L +DLS+  +KA VR VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  E---RSEEQPQVEPEDAPGAKD-----KEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSI 120
           E   R  E  QV  E+  G KD     KE+DDDGDLI+C LS KR+VTIQ+F+GK+LVSI
Sbjct: 61  EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSI 120

Query: 121 REFYRKDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQ 157
           RE+Y+KDGK+LPTSKGISLT+EQWS FKKN+PAIE A+KKM+S+
Sbjct: 121 REYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESR 164

[Close]

BLAST of Tan0001884 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-16
Identity = 62/163 (38.04%), Postives = 89/163 (54.60%), Query Frame = 0


Query: 1   MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
           M+    ++IE  V+ IL  SDMD+MTE K+R  AS  L +DLS + +K LVR V+E FL 
Sbjct: 12  MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71

Query: 61  ERSEEQPQVEPEDAPGAKDK-------EYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIR 120
               E   + PE    AK++           + +  +C LS K+  T+Q +RG+  +SI 
Sbjct: 72  STPGE--ALVPETVAPAKNETVSVAAASVGGEDERFICKLSEKQNATVQRYRGQPFLSIG 131

Query: 121 EFYRKDGKDLPTSKGISLTEEQWSVFKKNVPAIEKAIKKMQSQ 157
              ++ GK     +G  L+  QWSV KKN  AIE  IK+ QS+
Sbjct: 132 S--QEHGK---AFRGAHLSTNQWSVIKKNFAAIEDGIKQCQSK 167

[Close]

BLAST of Tan0001884 vs. TAIR 10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator )

HSP 1 Score: 72.0 bits (175), Expect = 4.8e-13
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 83  DDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDGKDLPTSKGISLTEEQWSVFKKN 142
           D   D++VC +S  R+V+++++ GK  + IREFY KDGK LP  KGISL+ +QW+  + +
Sbjct: 36  DQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNH 95

Query: 143 VPAIEKAIKKM 154
              IEKA+  +
Sbjct: 96  AEDIEKALSDL 106

[Close]

BLAST of Tan0001884 vs. TAIR 10
Match: AT5G42060.1 (DEK, chromatin associated protein )

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-09
Identity = 30/61 (49.18%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 1  MDSEIQRRIEGAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQ 60
          +D +++R+I+  V++ILESS++ ++TE K R  AS  LDLDLS+ PYK +V++ VE+FL+
Sbjct: 11 IDKDLRRKIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFLE 70

Query: 61 E 62
          E
Sbjct: 71 E 71

The following BLAST results are available for this feature:

BLAST of Tan0001884 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65155	3.5e-45	60.37	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37...	[more]
O65154	6.7e-12	43.66	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37...	[more]
Q9FHX8	2.6e-08	49.18	Mediator-associated protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g42060 PE=1 ...	[more]
P53999	1.1e-06	40.32	Activated RNA polymerase II transcriptional coactivator p15 OS=Homo sapiens OX=9...	[more]
Q4R947	1.1e-06	40.32	Activated RNA polymerase II transcriptional coactivator p15 OS=Macaca fascicular...	[more]

BLAST of Tan0001884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931551.1	3.6e-71	93.04	RNA polymerase II transcriptional coactivator KELP-like [Cucurbita moschata] >XP...	[more]
XP_038878439.1	1.8e-70	92.95	RNA polymerase II transcriptional coactivator KELP-like [Benincasa hispida]	[more]
XP_008451928.1	2.6e-69	90.51	PREDICTED: RNA polymerase II transcriptional coactivator KELP [Cucumis melo] >KA...	[more]
XP_022985429.1	4.4e-69	91.14	RNA polymerase II transcriptional coactivator KELP-like isoform X3 [Cucurbita ma...	[more]
XP_004148989.1	3.7e-68	88.61	RNA polymerase II transcriptional coactivator KELP [Cucumis sativus] >KGN53421.1...	[more]

BLAST of Tan0001884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ETY4	1.7e-71	93.04	RNA polymerase II transcriptional coactivator KELP-like OS=Cucurbita moschata OX...	[more]
A0A5A7TPV6	1.3e-69	90.51	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo var. makuwa O...	[more]
A0A1S3BS20	1.3e-69	90.51	RNA polymerase II transcriptional coactivator KELP OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1JD91	2.1e-69	91.14	RNA polymerase II transcriptional coactivator KELP-like isoform X3 OS=Cucurbita ...	[more]
A0A0A0KZW5	1.8e-68	88.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052710 PE=3 SV=1	[more]

BLAST of Tan0001884 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10920.1	2.5e-46	60.37	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT4G10920.2	2.5e-46	60.37	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT4G00980.1	1.6e-16	38.04	zinc knuckle (CCHC-type) family protein	[more]
AT5G09250.1	4.8e-13	43.66	ssDNA-binding transcriptional regulator	[more]
AT5G42060.1	1.9e-09	49.18	DEK, chromatin associated protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 150..158
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	PANTHER	PTHR13215:SF6	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP	coord: 3..156
IPR017415	Putative RNA polymerase II transcriptional coactivator KELP	PIRSF	PIRSF038156	RNA_polymII_KELP	coord: 1..157 e-value: 6.7E-55 score: 183.3
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 8..59 e-value: 4.7E-11 score: 42.4
IPR003173	Transcriptional coactivator p15 (PC4), C-terminal	PFAM	PF02229	PC4	coord: 93..141 e-value: 2.4E-21 score: 75.1
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	2.30.31.10	Transcriptional Coactivator Pc4; Chain A	coord: 79..157 e-value: 6.8E-27 score: 94.9
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	54447	ssDNA-binding transcriptional regulator domain	coord: 90..152
IPR045125	RNA polymerase II transcriptional coactivator Sub1/Tcp4-like	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 3..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001884.1	Tan0001884.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0060261	positive regulation of transcription initiation from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity