Tan0001866 (gene) Snake gourd v1

Overview


Name	Tan0001866
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG02: 45821170 .. 45822629 (-)
RNA-Seq Expression	Tan0001866
Synteny	Tan0001866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTGTCCCCCTTCGGATGGTATTTGTATGAGTCAATATCAAAGTGGATGGAGAGAGTACTTATAGTGAATGGGAGCGAGACCTGTGAAAACGTGACCCACGGTCTCTTCTTTCGATTCACACCGTGAGACCCCTATGATCTGCCTGCTAGTTTGGCCTACACCAGACAATCCTTTCGGATGGCCTTGATCATGGGAGTCGGAACACCGTGAATTCCCAAAAGGGATACAGTTTTCTTGTTGGTTTTCTTTCGTGGTTCACCTTCGGTGGCTATTGTTTGGACGGATACTTGGAAACTTAAAGATTGAGGGTGACACTCACGAGATCCGTTAAGTGTTAATGAATTCAACCAAATAATGGTAACTGGTCGTCTAATGGAATAAGAGTTATTCTGGGATTAGGGTCTGGTCGAGAAAGTCTCGTCCTAGAGGAGGTGTGTTTGTGTTCACCCTTCGGTGGCGGTCATTCTAAACCTTTAGGATGTCATTGAAAATTTTAAATGACCTAGGGATCATAGGATTATTACTAAAACTTGATTGGTTTTTAAAAGTTTATGCGAGACTGACACAAAATTATTTGATTTTTTTTTCAGCTAAAAATATGTCTAGCTCAATAATCGCTTTACTTGCTTCCGACAAACTAGTGGGAGATAACTTCCAAACGTGGAAGAATAATATCAACACGATTTTATTAACTAACAACCTGAAGTTCGTGCTTATTGAGGAGTGTCCTCAGTTGTCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCATACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTTTACATCATTGCCAACTTATCTGAAGTATTGGCAAAGAAGCATGAGTTGTATGATCACCGCTAAAGAGATCATGGATTCGTTGCAGGACATGTTTGGACAACAGTCCTTTCAGGTAAGGCACGATTCACTCAAACACGTCTTCAACGCACGGATGAAAGAAGTGTCGTCTGTCCGTGAACATGTTCTAGACATGATGACCCACTTTAATCTGGCGGAGATGAACTGGGCTTCGATCGACGAGTCAAGCCAGGTCAGCTTTATTTTGGAGACTCTTCCGAATAGTTTCCTTCAATTTCGTAGCAACGCTGTTATGAACAAGATTAGCTACACTCTGACTACCCTCCTCAATAAGCTACAGAATTTCCAGTCCATGATGAGGATCAGAGCACCGGAAGTTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCTCAAGGACTAAACATGTTGCTCCTTCTCGCTCGAAAGGGAAGAAAAAGATGAAGAGGGGTAAAGCTGACCGAGATGCCCCCCAAAAGGGCAAGAAGGTCAAGGAAGTTGCAGAGAAAGGAAAGTGTTTCCACTGTAATGGGGACGACCACTGGAAGAGAAACTGTCCCAAGTTCCTTGCCGAGAGAAAAAATCAAGATAAATGA

mRNA sequence

ATGGGAGTGTCCCCCTTCGGATGGTATTTGTATGAGTCAATATCAAAGTGGATGGAGAGAGTACTTATAGTGAATGGGAGCGAGACCTGTGAAAACGTGACCCACGGTCTCTTCTTTCGATTCACACCGAGTGTCCTCAGTTGTCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCATACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTTTACATCATTGCCAACTTATCTGAAGTATTGGCAAAGAAGCATGAGTTGTATGATCACCGCTAAAGAGATCATGGATTCGTTGCAGGACATGTTTGGACAACAGTCCTTTCAGGTAAGGCACGATTCACTCAAACACGTCTTCAACGCACGGATGAAAGAAGTGTCGTCTGTCCGTGAACATGTTCTAGACATGATGACCCACTTTAATCTGGCGGAGATGAACTGGGCTTCGATCGACGAGTCAAGCCAGGTCAGCTTTATTTTGGAGACTCTTCCGAATAGTTTCCTTCAATTTCGTAGCAACGCTGTTATGAACAAGATTAGCTACACTCTGACTACCCTCCTCAATAAGCTACAGAATTTCCAGTCCATGATGAGGATCAGAGCACCGGAAGTTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCTCAAGGACTAAACATGTTGCTCCTTCTCGCTCGAAAGGGAAGAAAAAGATGAAGAGGGGTAAAGCTGACCGAGATGCCCCCCAAAAGGGCAAGAAGGTCAAGGAAGTTGCAGAGAAAGGAAAGTGTTTCCACTGTAATGGGGACGACCACTGGAAGAGAAACTGTCCCAAGTTCCTTGCCGAGAGAAAAAATCAAGATAAATGA

Coding sequence (CDS)

ATGGGAGTGTCCCCCTTCGGATGGTATTTGTATGAGTCAATATCAAAGTGGATGGAGAGAGTACTTATAGTGAATGGGAGCGAGACCTGTGAAAACGTGACCCACGGTCTCTTCTTTCGATTCACACCGAGTGTCCTCAGTTGTCGAGCTCGACTGCATCACGAAGTGTTCGTGATGCATACGATCGATGGATCAGGGCCAATGAAAAGGCCAAGGTTTACATCATTGCCAACTTATCTGAAGTATTGGCAAAGAAGCATGAGTTGTATGATCACCGCTAAAGAGATCATGGATTCGTTGCAGGACATGTTTGGACAACAGTCCTTTCAGGTAAGGCACGATTCACTCAAACACGTCTTCAACGCACGGATGAAAGAAGTGTCGTCTGTCCGTGAACATGTTCTAGACATGATGACCCACTTTAATCTGGCGGAGATGAACTGGGCTTCGATCGACGAGTCAAGCCAGGTCAGCTTTATTTTGGAGACTCTTCCGAATAGTTTCCTTCAATTTCGTAGCAACGCTGTTATGAACAAGATTAGCTACACTCTGACTACCCTCCTCAATAAGCTACAGAATTTCCAGTCCATGATGAGGATCAGAGCACCGGAAGTTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCTCAAGGACTAAACATGTTGCTCCTTCTCGCTCGAAAGGGAAGAAAAAGATGAAGAGGGGTAAAGCTGACCGAGATGCCCCCCAAAAGGGCAAGAAGGTCAAGGAAGTTGCAGAGAAAGGAAAGTGTTTCCACTGTAATGGGGACGACCACTGGAAGAGAAACTGTCCCAAGTTCCTTGCCGAGAGAAAAAATCAAGATAAATGA

Protein sequence

MGVSPFGWYLYESISKWMERVLIVNGSETCENVTHGLFFRFTPSVLSCRARLHHEVFVMHTIDGSGPMKRPRFTSLPTYLKYWQRSMSCMITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWASIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANVAYRSYHRGSTSRTKHVAPSRSKGKKKMKRGKADRDAPQKGKKVKEVAEKGKCFHCNGDDHWKRNCPKFLAERKNQDK

Homology

[Close]

BLAST of Tan0001866 vs. NCBI nr
Match: TYK28896.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 60

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFIL++LP SFLQFRSNAVMNKI+YTLTTLLN+LQNF+S+M+I+  + EANV
Sbjct: 61  VIDEASQVSFILKSLPESFLQFRSNAVMNKIAYTLTTLLNELQNFESLMKIKGQKGEANV 120

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGST  TK V  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 121 ATSTRKFHRGSTCGTKSVPSSSGNKKWKKKKGGQGNKANPAAAKTSKKAK--AAKGICFH 180

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 181 CNQEGHWKRNCPKYLAEKK 197

[Close]

BLAST of Tan0001866 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 8.3e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--AAKGICFH 267

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 268 CNQEGHWKRNCPKYLAEKK 284

[Close]

BLAST of Tan0001866 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 8.3e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 147 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 206

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 207 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--AAKGICFH 266

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 267 CNQEGHWKRNCPKYLAEKK 283

[Close]

BLAST of Tan0001866 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 8.3e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTK--AAKGICFH 267

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 268 CNQEGHWKRNCPKYLAEKK 284

[Close]

BLAST of Tan0001866 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 235.0 bits (598), Expect = 8.3e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--AAKGICFH 267

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 268 CNQEGHWKRNCPKYLAEKK 284

[Close]

BLAST of Tan0001866 vs. ExPASy TrEMBL
Match: A0A5D3DYU3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G00160 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.4e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 1   MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 60

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFIL++LP SFLQFRSNAVMNKI+YTLTTLLN+LQNF+S+M+I+  + EANV
Sbjct: 61  VIDEASQVSFILKSLPESFLQFRSNAVMNKIAYTLTTLLNELQNFESLMKIKGQKGEANV 120

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGST  TK V  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 121 ATSTRKFHRGSTCGTKSVPSSSGNKKWKKKKGGQGNKANPAAAKTSKKAK--AAKGICFH 180

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 181 CNQEGHWKRNCPKYLAEKK 197

[Close]

BLAST of Tan0001866 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--AAKGICFH 267

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 268 CNQEGHWKRNCPKYLAEKK 284

[Close]

BLAST of Tan0001866 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTK--AAKGICFH 267

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 268 CNQEGHWKRNCPKYLAEKK 284

[Close]

BLAST of Tan0001866 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 265 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 324

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 325 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--AAKGICFH 384

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 385 CNQEGHWKRNCPKYLAEKK 401

[Close]

BLAST of Tan0001866 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 4.0e-58
Identity = 128/199 (64.32%), Postives = 158/199 (79.40%), Query Frame = 0


Query: 90  MITAKEIMDSLQDMFGQQSFQVRHDSLKHVFNARMKEVSSVREHVLDMMTHFNLAEMNWA 149
           M+TA+EIMDSLQ+MFGQ S+Q++HD+LK+++NARM E +SVREHVL+MM HFN+AEMN A
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 150 SIDESSQVSFILETLPNSFLQFRSNAVMNKISYTLTTLLNKLQNFQSMMRIRAPEVEANV 209
            IDE+SQVSFILE+LP SFLQFRSNAVMNKI+YTLTTLLN+LQ F+S+M+I+  + EANV
Sbjct: 148 VIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANV 207

Query: 210 A--YRSYHRGSTSRTKHVAPSRSKGKKKMKRG----KADRDAPQKGKKVKEVAEKGKCFH 269
           A   R +HRGSTS TK +  S    K K K+G    KA+  A +  KK K  A KG CFH
Sbjct: 208 ATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--AAKGICFH 267

Query: 270 CNGDDHWKRNCPKFLAERK 283
           CN + HWKRNCPK+LAE+K
Sbjct: 268 CNQEGHWKRNCPKYLAEKK 284

The following BLAST results are available for this feature:

BLAST of Tan0001866 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001866 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28896.1	4.9e-58	64.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0044955.1	8.3e-58	64.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	8.3e-58	64.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	8.3e-58	64.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	8.3e-58	64.32	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0001866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DYU3	2.4e-58	64.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2406G001...	[more]
A0A5A7SMH8	4.0e-58	64.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	4.0e-58	64.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	4.0e-58	64.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	4.0e-58	64.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]

BLAST of Tan0001866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 92..194 e-value: 1.1E-11 score: 44.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 239..254
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 216..254
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 88..243
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 88..243
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 256..279

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001866.1	Tan0001866.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding