Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTGAAATACCGATGTAGTGTCGAGAATCAAGATCGGGATTTGGAGATCCTCAATGACATCGTTCCTTCGGCGGTTAACTTGTCTAAAAAAGGGGTGATTTCTAATGTTAGTTGCCTTTTTTGCAGGTCTTTTGAAGAGTCAACTTGTCATCTGTTGTGGGAGTGTAAGTATGCTAAACATGTTTGGAGTCACTTTTTTCCTTCTTATAGTGGTTCTTTTTCTATGGGTAAGGGGGAGATGGGTGCCTTTGGACTACTGGGATTACATCAGGAAATCTACTGGAAGCAAGGACTTGAGGAGCCTTGTGATCTTGATGTGGAGAATTTGGCTTAGGCGAAACCAAGTTAGGTTTGGAAATGAGAATGTGTCCTTGGAGGTTTTGATCTTCTCAGTCTTTCAAATGCTGAAAGTGCCCAACAAGGAGGAAAGCCCTTTGTTATCAAACAGTGATCAAGATTTCGAGTTGAGTCAGAAAGGTTGGAAGCCCCCTATGGTAGGTTATTGGAAGTTGAATGTGGATGGAGCTTGGTCTGACAAATCTCTCGAAGGCGGCATTGGGTGGATCGTTAGGAATTGGCAAGGTGAGCCTGTTTTGGGCGGAATGACGTTTGTTTATCGGAGTTGA
mRNA sequence
ATGTTTGTGAAATACCGATGTAGTGTCGAGAATCAAGATCGGGATTTGGAGATCCTCAATGACATCGTTCCTTCGGCGGTTAACTTGTCTAAAAAAGGGGTGATTTCTAATGTTAGTTGCCTTTTTTGCAGGTCTTTTGAAGAGTCAACTTGTCATCTGTTGTGGGAGTTGGTTCTTTTTCTATGGGTAAGGGGGAGATGGGTGCCTTTGGACTACTGGGATTACATCAGGAAATCTACTGGAAGCAAGGACTTGAGGAGCCTTGTGATCTTGATGTGGAGAATTTGGCTTAGGCGAAACCAAGTTAGGTTTGGAAATGAGAATGTGTCCTTGGAGGTTTTGATCTTCTCAGTCTTTCAAATGCTGAAAGTGCCCAACAAGGAGGAAAGCCCTTTGTTATCAAACAGTGATCAAGATTTCGAGTTGAGTCAGAAAGGTTGGAAGCCCCCTATGGTAGGTTATTGGAAGTTGAATGTGGATGGAGCTTGGTCTGACAAATCTCTCGAAGGCGGCATTGGGTGGATCGTTAGGAATTGGCAAGGTGAGCCTGTTTTGGGCGGAATGACGTTTGTTTATCGGAGTTGA
Coding sequence (CDS)
ATGTTTGTGAAATACCGATGTAGTGTCGAGAATCAAGATCGGGATTTGGAGATCCTCAATGACATCGTTCCTTCGGCGGTTAACTTGTCTAAAAAAGGGGTGATTTCTAATGTTAGTTGCCTTTTTTGCAGGTCTTTTGAAGAGTCAACTTGTCATCTGTTGTGGGAGTTGGTTCTTTTTCTATGGGTAAGGGGGAGATGGGTGCCTTTGGACTACTGGGATTACATCAGGAAATCTACTGGAAGCAAGGACTTGAGGAGCCTTGTGATCTTGATGTGGAGAATTTGGCTTAGGCGAAACCAAGTTAGGTTTGGAAATGAGAATGTGTCCTTGGAGGTTTTGATCTTCTCAGTCTTTCAAATGCTGAAAGTGCCCAACAAGGAGGAAAGCCCTTTGTTATCAAACAGTGATCAAGATTTCGAGTTGAGTCAGAAAGGTTGGAAGCCCCCTATGGTAGGTTATTGGAAGTTGAATGTGGATGGAGCTTGGTCTGACAAATCTCTCGAAGGCGGCATTGGGTGGATCGTTAGGAATTGGCAAGGTGAGCCTGTTTTGGGCGGAATGACGTTTGTTTATCGGAGTTGA
Protein sequence
MFVKYRCSVENQDRDLEILNDIVPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWELVLFLWVRGRWVPLDYWDYIRKSTGSKDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNKEESPLLSNSDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGEPVLGGMTFVYRS
Homology
BLAST of Tan0001800 vs. NCBI nr
Match:
XP_042974792.1 (uncharacterized protein LOC122306430 [Carya illinoinensis])
HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 50/174 (28.74%), Postives = 72/174 (41.38%), Query Frame = 0
Query: 23 VPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWEL------------VLFLWVRGRWVPL 82
+P+ +NL K+ V+ +C C E+ CH LW + W G
Sbjct: 902 LPTKMNLMKRSVVKEATCPVCLIENETVCHALWSCRGASDVWACERSPVHKWSSGERDMF 961
Query: 83 DYWDYIRKSTGSKDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNKEES 142
+ W + L + ++M RIWLRRN + F N+ V + Q L +
Sbjct: 962 ELWSDWFLKLSREQLEIMAVVMRRIWLRRNGMVFDNKLVGPNEVFNQAVQCLTDFQLAQV 1021
Query: 143 PLLSNSDQDFELSQKG--WKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGE 183
S D +S K WKPPM K+N D AW K GIG ++R+ GE
Sbjct: 1022 KQTSKVDSSVPISNKASHWKPPMGDILKVNWDAAWKTKEDRSGIGVVIRDSSGE 1075
BLAST of Tan0001800 vs. NCBI nr
Match:
XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])
HSP 1 Score: 80.9 bits (198), Expect = 1.4e-11
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 0
Query: 83 KDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNKEESPLLSNSDQDFEL 142
+DL L+I W IW RN V F E+ S +I + + + + + LS +
Sbjct: 8 EDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNN 67
Query: 143 SQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGEPVLGGMTFV 192
K W+PP + W LN D +WSD + GGIGWI+R+W G+ VL G FV
Sbjct: 68 KLK-WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFV 115
BLAST of Tan0001800 vs. NCBI nr
Match:
XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])
HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 49/189 (25.93%), Postives = 86/189 (45.50%), Query Frame = 0
Query: 25 SAVNLSKKGVISNVSCLFCRSFEESTCHLLWE--LVLFLWV-------------RGRWVP 84
S V L + N + L R EE+T H+LWE ++ +W+ R W
Sbjct: 112 SMVMLEEPRANCNFNELEFRKKEETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTT 171
Query: 85 LDYWDYIRKSTGSKDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNKEE 144
+YW+++ G ++ R +I+ +IW RN+ F + + ++ + + + + +
Sbjct: 172 KEYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYI-INSAGQ 231
Query: 145 SPLLSNSDQDF-------ELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGE 192
L +DF + ++ WKPP WKLN D AW + GIGWI+R+ +GE
Sbjct: 232 DTNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGE 291
BLAST of Tan0001800 vs. NCBI nr
Match:
XP_018829827.1 (uncharacterized protein LOC108997896 [Juglans regia] >KAF5471953.1 hypothetical protein F2P56_008710 [Juglans regia])
HSP 1 Score: 77.8 bits (190), Expect = 1.1e-10
Identity = 57/189 (30.16%), Postives = 93/189 (49.21%), Query Frame = 0
Query: 7 CSVENQDRDLEILNDIVPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWELVLFLWVRG- 66
CS E+Q +E L DI+P+ L KK ++ + C C+ EE+ H+LW + V G
Sbjct: 9 CSREDQTLSMEALIDILPTKHVLLKKQIVEDGLCPICQGNEENVIHVLWNCFATMDVWGE 68
Query: 67 RWVPLDYW-----DYIR------KSTGSKDLRSLVILMWRIWLRRNQVRFGNENVSLEVL 126
R PL+ W D+I L + I++++IW RR F N S VL
Sbjct: 69 RDSPLNKWSSNYKDFILLWLDMVNRLDVVQLDQVAIILYKIWARRTCFVFKNIFNSPLVL 128
Query: 127 IFSVFQMLKVPNKEESPLLSN-SDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIG 183
+ S ++V ++ L + + ++++ W+PP ++KLN D A+ + GIG
Sbjct: 129 VKSALNDVEVFHESHLRLTYDAASLPQQITKVEWRPPTNPFYKLNFDAAFDSEKRLMGIG 188
BLAST of Tan0001800 vs. NCBI nr
Match:
XP_023929714.1 (uncharacterized protein LOC112041034 [Quercus suber])
HSP 1 Score: 77.4 bits (189), Expect = 1.5e-10
Identity = 49/175 (28.00%), Postives = 84/175 (48.00%), Query Frame = 0
Query: 23 VPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWELVLFLWVRGRWVPLDYWDYIRKST-- 82
+P+ +NL K+ V+SN C CR+ E H LW + R W +++IR
Sbjct: 17 LPTKLNLFKRQVVSNGCCDECRTCLEDNTHALWYCDV---ARAIWQTDVRFNFIRTKKLS 76
Query: 83 ------------GSKDLRS-LVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNK 142
GS DL + +++W IW RR ++R G + + ++ ++L
Sbjct: 77 TFADLVQFLCLHGSSDLFAWFAMVVWSIWERRKRLRVGQPSWQVNEVVQRASELLHEFQD 136
Query: 143 EESPLLSNSDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGE 183
++P+ + + +L WKPP G +KLN DGA + GIG ++R+W+G+
Sbjct: 137 VQTPVRQAAVRSEDLR---WKPPDSGLYKLNFDGAVFADQVSAGIGVVIRDWEGQ 185
BLAST of Tan0001800 vs. ExPASy TrEMBL
Match:
M5Y023 (zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa022315mg PE=4 SV=1)
HSP 1 Score: 84.0 bits (206), Expect = 7.8e-13
Identity = 53/180 (29.44%), Postives = 86/180 (47.78%), Query Frame = 0
Query: 18 ILNDIVPSAVNLSKKGVISNVSCLFCRSFEESTCHLL---------WE---LVLFLWVRG 77
+++ I+P+ NL++K V + C+ C ES+ H+L W L W G
Sbjct: 111 VISGILPTKANLARKKVSLDEECMLCEGPVESSIHILRDCPFAICAWRSSTLSSSRWNNG 170
Query: 78 RWVPLDYWDYIRKSTGSKDLRSLVILMWRIWLRRNQVRFGN-----ENVSLEVLIFSVFQ 137
P D+ + S+D + +++ W IW RN + + N E VSL + +
Sbjct: 171 AHSPKDWVFRCAEQLSSQDFATFLMVGWAIWEARNGLLWNNKKSRPEQVSLHASL-RLQD 230
Query: 138 MLKVPNKEESPLLSNSDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQ 181
L+V N L + + ++ QK W+PP K+NVDGAW + EGG+G +VR W+
Sbjct: 231 FLRVSN-----CLGSQSRQGQIKQKMWQPPHENSLKINVDGAWKPGTTEGGVGVVVRCWR 284
BLAST of Tan0001800 vs. ExPASy TrEMBL
Match:
M5XSK0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_ppa016553mg PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 3.9e-12
Identity = 52/177 (29.38%), Postives = 87/177 (49.15%), Query Frame = 0
Query: 18 ILNDIVPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWELVLFLWVRGRWVPLDYWDYIR 77
+++ I+P+ NL++K V + C+ C +S H+L + W G P D+
Sbjct: 708 VISGILPTKANLARKKVSLDEECMLCEGPVKSLIHILRDCP---WNNGAHSPKDWVCRCA 767
Query: 78 KSTGSKDLRSLVILMWRIWLRRNQVRFGN-----ENVSLEVLIFSVFQMLKVPNKEESPL 137
+ S+D + +++ W IW RN + + N E VSL + + L+V N
Sbjct: 768 EQLSSQDFATFLMVGWAIWEARNGLLWNNKKSRHEQVSLHASL-RLHDFLRVSN-----C 827
Query: 138 LSNSDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGEPVLGGMT 190
L + + ++ Q W+PP K+NVDGAW + EGG+G +VR+ G+ V G T
Sbjct: 828 LGSQSRQGQIKQM-WQPPHENSLKINVDGAWKPGTTEGGVGVVVRDSTGKFVAGCAT 874
BLAST of Tan0001800 vs. ExPASy TrEMBL
Match:
A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)
HSP 1 Score: 80.9 bits (198), Expect = 6.6e-12
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 0
Query: 83 KDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNKEESPLLSNSDQDFEL 142
+DL L+I W IW RN V F E+ S +I + + + + + LS +
Sbjct: 8 EDLDVLLIGSWVIWNHRNYVIFRGEHSSFSTMIQQLTKFVTESSYQSETSLSMLHKTLNN 67
Query: 143 SQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGEPVLGGMTFV 192
K W+PP + W LN D +WSD + GGIGWI+R+W G+ VL G FV
Sbjct: 68 KLK-WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFV 115
BLAST of Tan0001800 vs. ExPASy TrEMBL
Match:
A0A2N9F155 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8483 PE=4 SV=1)
HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 48/175 (27.43%), Postives = 77/175 (44.00%), Query Frame = 0
Query: 20 NDIVPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWELVLF--LWVRGRWVP-------- 79
++ +P+ +NL + VI + SC C E+ H LW+ + +W W
Sbjct: 387 HESLPTRINLHHRHVIQDPSCGNCNDMNETVIHALWQCNILEEIWNSVPWGRRMIHNHYL 446
Query: 80 --LDYWDYIRKSTGSKDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNK 139
++ + + +L+ W IW RRN R ++ L L+ Q+L
Sbjct: 447 NFMELFHHCHSDLSPSELQLFAFTTWSIWYRRNCQRLNQQSAPLNQLMPRAQQLLSEFQA 506
Query: 140 EESPLLSNSDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGE 183
+ S S Q ++ WKPP +K+N DGA+ + S E GIG I+RN GE
Sbjct: 507 AQESPSSTSRQSDPPTKVSWKPPQPRRYKVNYDGAFFEDSNEAGIGVIIRNHTGE 561
BLAST of Tan0001800 vs. ExPASy TrEMBL
Match:
A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 49/189 (25.93%), Postives = 86/189 (45.50%), Query Frame = 0
Query: 25 SAVNLSKKGVISNVSCLFCRSFEESTCHLLWE--LVLFLWV-------------RGRWVP 84
S V L + N + L R EE+T H+LWE ++ +W+ R W
Sbjct: 112 SMVMLEEPRANCNFNELEFRKKEETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTT 171
Query: 85 LDYWDYIRKSTGSKDLRSLVILMWRIWLRRNQVRFGNENVSLEVLIFSVFQMLKVPNKEE 144
+YW+++ G ++ R +I+ +IW RN+ F + + ++ + + + + +
Sbjct: 172 KEYWEWLMDKAGEEERRRSMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYI-INSAGQ 231
Query: 145 SPLLSNSDQDF-------ELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQGE 192
L +DF + ++ WKPP WKLN D AW + GIGWI+R+ +GE
Sbjct: 232 DTNLKRKSKDFHPIRRIGDNTRARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGE 291
BLAST of Tan0001800 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 58.9 bits (141), Expect = 5.1e-09
Identity = 47/182 (25.82%), Postives = 82/182 (45.05%), Query Frame = 0
Query: 19 LNDIVPSAVNLSKKGVISNVSCLFCRSFEESTCHLLWELVL--FLW--------VRGRWV 78
L++ +P A L+ + + +C+ C S +E+ HLL++ W + G W
Sbjct: 274 LSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWA 333
Query: 79 PLD----YWDY-IRKSTGSKDLRSLVI--LMWRIWLRRNQVRF-GNENVSLEVLIFSVFQ 138
YW + + + S ++ L+WR+W RN++ F G E + EVL +
Sbjct: 334 DSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDD 393
Query: 139 MLKVPNKEESPLLSNSDQDFELSQKGWKPPMVGYWKLNVDGAWSDKSLEGGIGWIVRNWQ 183
+ + + E+ Q S W+PP + K N D W+ + GIGW++RN +
Sbjct: 394 LEEWRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEK 453
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_042974792.1 | 1.4e-11 | 28.74 | uncharacterized protein LOC122306430 [Carya illinoinensis] | [more] |
XP_022155262.1 | 1.4e-11 | 37.61 | uncharacterized protein LOC111022403 [Momordica charantia] | [more] |
XP_022154990.1 | 3.0e-11 | 25.93 | uncharacterized protein LOC111022134 isoform X1 [Momordica charantia] | [more] |
XP_018829827.1 | 1.1e-10 | 30.16 | uncharacterized protein LOC108997896 [Juglans regia] >KAF5471953.1 hypothetical ... | [more] |
XP_023929714.1 | 1.5e-10 | 28.00 | uncharacterized protein LOC112041034 [Quercus suber] | [more] |
Match Name | E-value | Identity | Description | |
M5Y023 | 7.8e-13 | 29.44 | zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_p... | [more] |
M5XSK0 | 3.9e-12 | 29.38 | Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU... | [more] |
A0A6J1DNV9 | 6.6e-12 | 37.61 | uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022... | [more] |
A0A2N9F155 | 1.1e-11 | 27.43 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8483 PE=4 SV=1 | [more] |
A0A6J1DL64 | 1.5e-11 | 25.93 | uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... | [more] |
Match Name | E-value | Identity | Description | |
AT4G29090.1 | 5.1e-09 | 25.82 | Ribonuclease H-like superfamily protein | [more] |