Tan0001709 (gene) Snake gourd v1

Overview


Name	Tan0001709
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LOW PSII ACCUMULATION 2, chloroplastic
Location	LG01: 3124571 .. 3127299 (-)
RNA-Seq Expression	Tan0001709
Synteny	Tan0001709

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAATTTTGGGAACTTTGTACTGAAGAGAAAAATAGATTTCATAATTCTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTATGAGTTCTTTTTCATAATTTAATTCATTGGAACCTGAACTTCGAAATTGTATTTTGTGAAAGTTGATTTTGCGGTTTCCATTTTCATTGGTGGCACTTTTTCTCTTGTAATTGGGTTGTTGGTCTGAAACGTGGTAATAGTCAAAATCTGAATCGAATAGGATTTTTCTTTAAGACGTGGATGTAGAAGTTTGAAACCAAATTCTGAACAATTGGCGAACTGTGAAGGGAATTACTATTTTGGTAAGATAGTGGGTTGAAATTTTTGTCAGGTTATCTGTTGAAAAAGATTGAAAATGAGAAGCAGTTGACTTATGAAATGAAGAATATTATAATCTAGGCCCCCTTCATTTCGTGTTGTGAATAGCAGGGGCTGTTCTTCAATCACCATTCTCAGTCTCGAAGTGCATATTTGGAGTGTTTATATAAGGCAACATTTCATAACCATTTATGACTAAGGTAATGTTATGCATAGAGTTCTCCTAAGCTAAGGATGTGAAATGAGTGTGGATGTATAGTGATGTATGTTCTCATTGTATAGGTGTTTAGTGGGAAGGCACTGGCCTCTTACTTTCTGTTGGTGGGAATATTTTCTTTCAAGGATATCTCTTCAGTCATTGTATACTCTTTAGTGTAAGAAAGTTGATCTTTAATAGTGGATTAGATTCTTTTTGTCCTCCTCTTCCATGGCATGTATACGTATGTGCTAGGGTAGCATCAATTTGTTGGTTGATTTGGCTTTCCAATACCAACCACTTTGACCTATTGCAGGCTCTAGATTTTTCCTCTAGGAAATATGTTGCATAAATCTTACAATGCTTATTTATAAGAAATTGTAGTTAATGTGTAAAAAACATAGCCTTCCTTTTAGTGTAGGATTTTCCAATAAAAATAAGATGCTTGTGTTTTTGCTGGCCTTGTGAATGATTCATTTCATCTGGAAGACCCTCAACTAACTACTCTTGTTTAGAAGCATGTTTGATATGCTATGTAACTTGACTTCATAAATGAATTTGACTATGTTACTGCTAATTTATAATTTATATTTTTTAGTGTTCCATTGAAATGGGAATCTACTTATTGAACTTAACACACAGTTATTCAAATCCTCTTTTCTACTTCTCTCTTTAGGACTAGGAATGTTTACCTTTTCAGATTTTAGAAAGGTCCTCAGTTAGATTGTCGTTCATTTCAGATTGTTCCTTCAATTAATGGTTCTGTAGAGTAACATTGACTTTCATTTGGTATCCTTAAATCTAATGTAGCTGAAATGCTGGATAAGATCAGGAAATGTCCATTATGTTATCTAAAAGATTCTGGTCGTTCAAAGCCTGTTCTCTAACTCTCAGTTAAAGCCATGGTTTTTACCCAAAAAAAAACCACTATTTTGGAATCTTCTTGATTAAAAGCTGTTGTTTAGAGTTCAATGATTTGACACTTCAGGCCTATATTTGAGATTGCAAAACGTATGACACACTTCATTCGTGGTTAATTATACCATCAAACTAATAGAAAGTGATGGCTCTTTTATGTTTTAAGTACCTTTCATAGTTTCATGTGGACAATCTGCAGTGAACTTTTTCTACTTTTATACCATTGAATTATTTAATCGTTCTAAATATAGGAAACATTTTCTTGCTTTTATTTGACTAGTGCCAATATGCACTTTGTTTGACTGACTTTCCAGCCTATTTTCAGTTAAAAAAATTTGATGTCTAATTCCTTTGATGAATACAAAATCCACAGTTCATGTTTTCATTTCACTTCCACCACCACAACTAATTGGTTGATGTGAACCTGCAGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAATTTAATCTTTTGATTGACGTTCTGCATTTGGTGTGAAGACCTGAAAAATCTGAATTGCCTATAGATTGTGTTTATACTAAGTATGTCATTTGACTGATAAACCGAGGATGGAAATTTTTTTAGCTTAGAAGCAAATGAGATGCTATTGTTGGATACTAGGGAACAACTTGCCATCAATTATTAGTTTCTTTGAGTTTCACGTCTAATTATGTTTTTGATGTTCAATGATG

mRNA sequence

GCAATTTTGGGAACTTTGTACTGAAGAGAAAAATAGATTTCATAATTCTAAACTGAACCAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAATTTAATCTTTTGATTGACGTTCTGCATTTGGTGTGAAGACCTGAAAAATCTGAATTGCCTATAGATTGTGTTTATACTAAGTATGTCATTTGACTGATAAACCGAGGATGGAAATTTTTTTAGCTTAGAAGCAAATGAGATGCTATTGTTGGATACTAGGGAACAACTTGCCATCAATTATTAGTTTCTTTGAGTTTCACGTCTAATTATGTTTTTGATGTTCAATGATG

Coding sequence (CDS)

ATGGCGCTACAAATAATCCACCATTCTCCTTCTTCTTTCAACAGAAAACCCTATCATCTTCCCAACACACCTCTCCATTTCCCCTCAAAACGCCAATTCTTCATCAAATCGCAGAACCCATCGGAATCGGAGAAGCCCATTTCGAAAATTGTCGACGATGCTCCACTTGCGACCTCATCCAAGGCATCGAGCTCATCTGCTCAAGGTTTCGGCTCTTCATCGTCTCAATCGATGACTACGAGCAAATCAAGTCCAAAGGCTGCACCCTTCAAGGGAAAGCAGAAGGGTAAGCGGCAGAGAGCATCCATTATTCGGCGCTCGCCGCTGGAGAAACCGGTGTTTGTTGGAGAAGTAGATGAAGAAGCAGCTAAGGAGCAGAGCAGGAATGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGCGCTGTGATTCTCGTCGAGGGGATTGTGCTTGCGGCATCCGGTTTCTTACCAGAAGAGTGGGATAAGTTCTTTGTCAAATATTTGTATCCATCCTTTACCCCAACCGTCTCTCTGTTTGTTGCTGGAACTGTTGCATATGGAGTTTCGAAGTATCTTCAGAATGAGAAAATTAAAGGTGATAAATCATAA

Protein sequence

MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVSKYLQNEKIKGDKS

Homology

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BLAST of Tan0001709 vs. ExPASy Swiss-Prot
Match: F4KDA6 (Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.0e-41
Identity = 112/202 (55.45%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQI  HSP SF+ +PYHL  T        +F IK QN S+ E       D     + S
Sbjct: 1   MALQI--HSPCSFSTRPYHLFFT----TRNPRFAIKCQN-SQIES------DTTEDPSRS 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
           K SSSS  GFGS +S S    K S   A   G +KGK +R  + RR+P+EKPVF+ E   
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLS---AATSGNKKGKGKR-EVNRRAPVEKPVFMSEEGA 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
             A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LF
Sbjct: 121 AKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDK 203
           VAGT AYGV KY+QNEK+KG +
Sbjct: 181 VAGTTAYGVLKYIQNEKMKGQE 185

[Close]

BLAST of Tan0001709 vs. NCBI nr
Match: XP_023554492.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 336.3 bits (861), Expect = 1.9e-88
Identity = 177/203 (87.19%), Postives = 184/203 (90.64%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQIIHHSPSSF RKPYHLP TPLHFPSK +F IKSQNPSESEKPISK VDDAP+ T  
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
               SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Tan0001709 vs. NCBI nr
Match: XP_022941727.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828.1 Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 334.0 bits (855), Expect = 9.3e-88
Identity = 176/203 (86.70%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQIIHHSPSSF RKPYHLP  PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T  
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
               SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Tan0001709 vs. NCBI nr
Match: XP_038899637.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 333.2 bits (853), Expect = 1.6e-87
Identity = 180/203 (88.67%), Postives = 186/203 (91.63%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQI+HHSPSSF RKPYHLPN  L+FPSK +F I SQNPSESEKPISK VDDAPLATSS
Sbjct: 1   MALQILHHSPSSFTRKPYHLPNPSLNFPSKPKFIITSQNPSESEKPISKNVDDAPLATSS 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
           K SSSS QGFGSSSSQS TTSKSSPKA     KQKGKRQRASIIRRSP+EKPVFVG+VDE
Sbjct: 61  KPSSSSPQGFGSSSSQSTTTSKSSPKAV----KQKGKRQRASIIRRSPVEKPVFVGKVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGV KYLQNEKIK +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Tan0001709 vs. NCBI nr
Match: XP_022973018.1 (protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima])

HSP 1 Score: 328.6 bits (841), Expect = 3.9e-86
Identity = 174/203 (85.71%), Postives = 182/203 (89.66%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQIIHHSPSSF RKPYHLP TPL+FPSK +F IKSQ+PSESEKPISK VDDA + T  
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT-- 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
               SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Tan0001709 vs. NCBI nr
Match: KAG6600161.1 (Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 325.9 bits (834), Expect = 2.5e-85
Identity = 172/199 (86.43%), Postives = 179/199 (89.95%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQIIHHSPSSF RKPYHLP  PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T  
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
               SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIK 200
           VAGTVAYGVSKYLQNEK+K
Sbjct: 181 VAGTVAYGVSKYLQNEKLK 193

[Close]

BLAST of Tan0001709 vs. ExPASy TrEMBL
Match: A0A6J1FNA7 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447004 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 4.5e-88
Identity = 176/203 (86.70%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQIIHHSPSSF RKPYHLP  PLHFPSK +F IKSQNPSESEKPISK VDDAP+ T  
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKIPLHFPSKLKFIIKSQNPSESEKPISKTVDDAPVGT-- 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
               SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPEKWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Tan0001709 vs. ExPASy TrEMBL
Match: A0A6J1IBT8 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111471505 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.9e-86
Identity = 174/203 (85.71%), Postives = 182/203 (89.66%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQIIHHSPSSF RKPYHLP TPL+FPSK +F IKSQ+PSESEKPISK VDDA + T  
Sbjct: 1   MALQIIHHSPSSFTRKPYHLPKTPLYFPSKPKFIIKSQSPSESEKPISKTVDDAAVGT-- 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
               SSAQGFGS SSQS T+SKSSPKA   KGKQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  ----SSAQGFGSLSSQSTTSSKSSPKATTSKGKQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           EA KEQ +NESYFLLTWLGLGAVILVEGIVLAASGFLPE WDKFFVKYLYPSFTPTVSLF
Sbjct: 121 EAIKEQGKNESYFLLTWLGLGAVILVEGIVLAASGFLPENWDKFFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGVSKYLQNEK+KGDKS
Sbjct: 181 VAGTVAYGVSKYLQNEKLKGDKS 197

[Close]

BLAST of Tan0001709 vs. ExPASy TrEMBL
Match: A0A1S3AXX6 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103483996 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 171/203 (84.24%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQI+HHSPSSF +KPYHLPN  LHF SK +F IKSQNPSESEKPISKIVDDAP+ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
           K S+SS QGFGSSS QS +TSKS+PK+     KQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  KPSTSSPQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           + AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGV KYLQNEKIK +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Tan0001709 vs. ExPASy TrEMBL
Match: A0A5A7VJY0 (Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00540 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 3.0e-84
Identity = 170/203 (83.74%), Postives = 183/203 (90.15%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQI+HHSPSSF +KPYHLPN  LHF SK +F IKSQNPSESEKPISKIVDDAP+ATSS
Sbjct: 1   MALQILHHSPSSFTKKPYHLPNPSLHFSSKPKFIIKSQNPSESEKPISKIVDDAPIATSS 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
           K  +SS+QGFGSSS QS +TSKS+PK+     KQKGKRQRASIIRRSP+EKPVFVGEVDE
Sbjct: 61  KPYTSSSQGFGSSSPQSTSTSKSTPKSV----KQKGKRQRASIIRRSPVEKPVFVGEVDE 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
           + AKEQSRNESYFLLTWLGLG VILVEGIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLF
Sbjct: 121 QVAKEQSRNESYFLLTWLGLGVVILVEGIVLAASGFLPEEWDRLFVKYLYPSFTPTVSLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDKS 204
           VAGTVAYGV KYLQNEKIK +KS
Sbjct: 181 VAGTVAYGVLKYLQNEKIKDEKS 199

[Close]

BLAST of Tan0001709 vs. ExPASy TrEMBL
Match: A0A6J1CH98 (protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011420 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.0e-83
Identity = 176/205 (85.85%), Postives = 182/205 (88.78%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQN--PSESEKPISKIVDDAPLAT 60
           MALQII HSPSSF RKPY LP  PL FPSKR F IKSQN   SESEK ISK+VDDA +AT
Sbjct: 1   MALQIIPHSPSSFTRKPYRLPTIPLQFPSKRNFVIKSQNSSESESEKLISKVVDDASVAT 60

Query: 61  SSKASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEV 120
           SSKASSSSAQGFGSS +QS  TSK SPKA P KGKQKGKRQRASIIRRSP+EKPVFVG+V
Sbjct: 61  SSKASSSSAQGFGSSPTQS--TSKLSPKATPSKGKQKGKRQRASIIRRSPVEKPVFVGQV 120

Query: 121 DEEAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVS 180
           DEEAAKEQ RNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKF VKYLYPSFTPTVS
Sbjct: 121 DEEAAKEQGRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFLVKYLYPSFTPTVS 180

Query: 181 LFVAGTVAYGVSKYLQNEKIKGDKS 204
           LFVAGTVAYGV KYLQNEK KG+KS
Sbjct: 181 LFVAGTVAYGVLKYLQNEKTKGEKS 203

[Close]

BLAST of Tan0001709 vs. TAIR 10
Match: AT5G51545.1 (low psii accumulation2 )

HSP 1 Score: 171.4 bits (433), Expect = 7.4e-43
Identity = 112/202 (55.45%), Postives = 134/202 (66.34%), Query Frame = 0


Query: 1   MALQIIHHSPSSFNRKPYHLPNTPLHFPSKRQFFIKSQNPSESEKPISKIVDDAPLATSS 60
           MALQI  HSP SF+ +PYHL  T        +F IK QN S+ E       D     + S
Sbjct: 1   MALQI--HSPCSFSTRPYHLFFT----TRNPRFAIKCQN-SQIES------DTTEDPSRS 60

Query: 61  KASSSSAQGFGSSSSQSMTTSKSSPKAAPFKGKQKGKRQRASIIRRSPLEKPVFVGEVDE 120
           K SSSS  GFGS +S S    K S   A   G +KGK +R  + RR+P+EKPVF+ E   
Sbjct: 61  KNSSSSGVGFGSPASSSSPAKKLS---AATSGNKKGKGKR-EVNRRAPVEKPVFMSEEGA 120

Query: 121 EAAKEQSRNESYFLLTWLGLGAVILVEGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLF 180
             A+EQ +NE+ FLLTWLGLG VIL+EGI+LAASGFLPEE DK FVKY+YP FTP+V LF
Sbjct: 121 AKAEEQRQNENAFLLTWLGLGIVILIEGIILAASGFLPEELDKLFVKYVYPVFTPSVVLF 180

Query: 181 VAGTVAYGVSKYLQNEKIKGDK 203
           VAGT AYGV KY+QNEK+KG +
Sbjct: 181 VAGTTAYGVLKYIQNEKMKGQE 185

The following BLAST results are available for this feature:

BLAST of Tan0001709 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4KDA6	1.0e-41	55.45	Protein LPA2 OS=Arabidopsis thaliana OX=3702 GN=LPA2 PE=2 SV=1	[more]

BLAST of Tan0001709 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023554492.1	1.9e-88	87.19	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022941727.1	9.3e-88	86.70	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita moschata] >KAG7030828....	[more]
XP_038899637.1	1.6e-87	88.67	protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]	[more]
XP_022973018.1	3.9e-86	85.71	protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita maxima]	[more]
KAG6600161.1	2.5e-85	86.43	Protein LOW PSII ACCUMULATION 2, chloroplastic, partial [Cucurbita argyrosperma ...	[more]

BLAST of Tan0001709 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FNA7	4.5e-88	86.70	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1IBT8	1.9e-86	85.71	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A1S3AXX6	1.0e-84	84.24	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7VJY0	3.0e-84	83.74	Protein LOW PSII ACCUMULATION 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1CH98	2.0e-83	85.85	protein LOW PSII ACCUMULATION 2, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Tan0001709 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51545.1	7.4e-43	55.45	low psii accumulation2	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..87
IPR038789	Protein LOW PSII ACCUMULATION 2 like	PANTHER	PTHR37385	PROTEIN LOW PSII ACCUMULATION 2, CHLOROPLASTIC	coord: 1..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001709.1	Tan0001709.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane