Tan0001703 (gene) Snake gourd v1

Overview


Name	Tan0001703
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA repair protein XRCC4-like
Location	LG02: 29134428 .. 29148418 (+)
RNA-Seq Expression	Tan0001703
Synteny	Tan0001703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGACATTTAGCAACCTTCCGCCATCAGCATTTTCAGAGCGCGAAGTCAAAAGAGCGCCATGGACACAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCGCAACCGAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTATCAGCACCGCTTCGAGCTCTCCATTACCGATGGCCTCAACGCTTGGACGTGCCATGGTGCCATTTCTCTAACTACCACTCAATTAACTTTACTTAGTTTATCTTGGATTCTGCTCTCATCTTTCAGTTGATTCTCATATTTATATGTTTCCCTTTGAATTTTTGAGGGACAGCAACGGAGGACGAGGTTCGTTTGCGCGCTACACAATGGGATCAAGAACCGTCGGACTATGTGGCGTTAGCCGAGCGCTATTTAGGGTTTCAGCAGCCTGGTTCGGTTTATGGTTTTGCCGATGCTGGAAATGGGGACAAGAGGGTTTGTGCCTTTTCCATTTCGTATCCTTATTTTTTTTTTCTGTCTCCCTTAGTCTTAACTGATGAGGTTATTGAAGATTTTATCAGGGACTGTTCGTTGTATAGGTACTAGTAAGCAAACAATAATTTATCAATTTGACTTAGAATTGGCCTCTTTGAATTCGTTTATTCTAGTTGAAGAGTGAATTGAATGGAAATTTGGCTAAATAGTTTCAATTTCCAGGTCTACTGGTGGTGAGTTGACAGCAATGTGCTCGGAGTATTGAAAAATCAATGTTTTTTCAAATATAGGGGCAATAACCTCTGTAAGCTTATATGCGAGGCATAACCAAAAGTGAGGACTTTTGTTTATGAAGCACAAAATAAAAAAAACAAAAAAATATTTATGGAAAGTTACATGATTATAATAATTATAAGAAATGATATATCGCAGGGTTAGGAGGTTGGCCCATGATAATAGTTGGGGTGTGCGCTGAATGTCTTTTACAAGGGATTTTTTTAAGAGTTGGGTGTTTTCTTCTCATTTCTTTTGAGAAAGAGAAGAAAATGAGAGAACATACCTTTGAGATGAGGGGACATGTGCTGTGCATTGCAAGGTGCCTACACCAAAAGGATTAATGGTTTAGGACAAAATAGACTTTTGGTTTATGAGATTTGGGATTGGTGTCTATTTGGTCCCTAGAGTTTCAAAAGAGACACTTTGGCCCTTAGAATAAAGAAATTGTTCTAAATGGTCCCTTCTTTGACGATTAGCTACTAATGATAAGATGATGTGGCAGTTAACTCGTGGCCATACCTTGTTGATATGGAAAAAATATATTAATATAATAACTTTTTTTTGTGACTAGAATTTCTTTCTTTTCCCCTCTCTTCCTTCCTCTCCCTTCTCCAGCAAAGCTTCATGTTGCTCAACATCTCCCTTTTCAGGAACCAAACTGTCTCTTTTGAAGTCTCATGGACCAAAATGATACAACTCCAACACTTAGGAATCAGAATTTAAGAATTTGATTATAATCATCAATCTTTTTGGGTGGGCTAGGTGGTAATCTTATGAACTTGGAAGAGGGATTCAATTATCTCAACACTAAAGTTCGGATTTTCATTTTAATCCTTGTACCACATTGATTGACATTTTGTATTGGTTCTTATGTAGCTTTCTTGGACATTTGACAAGGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCGACCAACGTCTGATAATAAGATAACAACAACAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTAAGCTATTTGTCCGCACTTCTCATTAATTTCTTTACCATATTGTTCAATTATTAACAGATGAATGGATTAATAGGATTCACCATGTAATCTAAAAAAAAAGTTACTGATAGTTACCTATTTCATGAACATTGAAATTTTACTTATATCCTGTGAACCACCGTGGGTTGGCTATGAGGTCCATAAGAGCTATGTAAATTATAAAGGACTTAGGGAAAATGAGTTCAAGGCATGGTAGCTAGTTTAAGAGTAAAGAGACAATAGTCAATGTATACTCAAGTTGGTCCCGATACTCATGATATCGGGAAAAAGAAAAATTTATGGCCTGTTCTTTCTAAAGCACAAGGGACACTAACTTGCAATAGACCTAGGCACACAACTTGTAAAACAATGGTTATGTTCCTCTGTTTGGTTCTATTATGTGATTGCTGTCTAAACATATCGAGATAATATATATATATATATATAAAAAAAATATATATATATATAGATAGATAGTTATTTATCTCTTTTAAGCTCTGATAAGGAGTCAGGAACACTAGTTAGTATGTATTTCAAAAGTAAATTAATTTATTTAAAAGATTAATGATTTGGAAGTCACTTATGAAGTTATGAATCTCGTAGTGAGTCATTGTTTATTTGAAATATTGTTTTTTTGTTTATTCTGCTTTCTTCACTGATGCACAACTACATGCGGTATTTGCATTATGCCTTAGAGATGCCCGTTGTTAGCCTTTTCTTAAAATTTATGCCTGCCTGGTTTTTGTATATATAGGAAGAGGTTGTGAGAAAAACGCAATCGTTTGAGAGGCTGAAAGTGGAGTCTGAGAAGTGTTTGGCTCAAAGCGAGAAGATTCGTGAAGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGGTACTAAAAATTTAATATGCTTGTGATTGGAATTTCACCCCATCTACATCTATTCTCTTCTTCGTCCCCTCAGTGATTGTAATGACATTCTGAATTATTGCTTCTTCAAAAATCATGCTACACTTTTTCTTCAAAAGTGGAGCATGATGCTTTATTTCTTGTACTTAAAAGTGTAGCATGATGTGTTGCGGTAACAAAACTACCGTTTACATCATTGCATTTTCTTTGTAGTTAACAATTTTATTAACCCAAACACAAAAATATAGGGAGGATGAGCATTTATCCGATTCTACAATCAGGCGACCTTTCCATTGCATTAATCTACTTGTCATATGTGTTTGCACTTCATTGATCAAGGATGGTAGACTCTGGAAATAGGTTAGAAGGATTCCTTTTCTACTTTCTAGTTCGCAGTTCTCAGTTTTGATTCCTTGGTAAGATATAGGAGATGTCGAAATGACCTCAACCCAACATGACTTTGATAGAACTCGTTTAATTCTTGAGAGAGATATACGTTGCCAAGGGATAATTCTAGATATCCCTAATTTTTCCAACTCCTACCTATCTCACAACTAAGGAAAAGGGTTTCCCGCTCTCCATGGTATGCCAGTAAACTTATATCATACTCTTTTTCAAGCGCGGTTGGTTAGTTACTAGGCATCTGAACCCTACAAAAAGGATTCTCAAAGGGGTTTCATTAATTGGAGGATGACCAGTATTTGTTGTCATTCTGCCGCCATATTTGAACCACAAACTCTCCATGCGGTCGACTGAAAGCTCTGGACTGACTTAAAGTTTCTCTTTCCAAAATCCATCATGTGCTTTTTTGTTGATTAGAAAACCAAACCTTTCATTGAGGAAAAATGAAATAATCGAAAGCACTTACAAAAAGAAAGTCCACAACAACATCCTTCCTATGTTCCTCGTTGCTATGGTCAAAACTTGAAAAAAAGTATCAAGTGGAAGCAGTGCAGGTATTTAAAGTTTAGGATAAGCTGATGAGATGATAATCTATCACGTTTTAAGTTCAGATAACGTGTGGTAGATAATTATTTTAACTTAGGGTCCATAGAAAAAACCATTATGTGGAATCTGATGAGCTGATCACAGCCTTACCTGAACATGATCTGTTCTATACCCTTGAGTTCTAAAGAATTTGATGAGCTGATCTAATGAGATAATTTTAAGTCTAAGATAAAAGAGCAAGCATATTTTTTACCTTTTTCATGAGATGATCAATGAAGCATATACGTTTCATTTGTGACTTGTATTAGACATTTCAATACTTGTTGCATACCTTTCAATGTTGGACATGTATCAACCACTCTGATGTGTACTTGTCGTGGACATGTGTTGGATAATTATTGGATGATTGGACTGGAGTGTTAAATTTGTATTTATTTATTTATTTTGGGTTAAATTATAAATTCAGTTTTGAACTTATATGTGATAGACCCCCTATCACGAAAGTGTATACTCGAAAGGGGGGTAAGAAAGGCAGGGGAGGGAAATAATTTGTATGTGGGCCCGGGTTGGTTAGAGGAGTGAGAATGGTTGTTATAGGTGGGAGTGAGTGAGTGGAAGGGGTATCTTTTTGTCTGTCTTTGTTAGTAGGTTTCTCTGAGGAGAATTGTTGATGAGGAGGGGAGCTCTAAAAAACTCCCTGTGATTTGGAATTGTTGATAAATAAAATTGATTGTGGCTAAGGCCTATCAATTTTGGTATCAGAGCAACGTTCCTTGGGTATGGTGGGAAAGATGGAAGCCAGACTAATCGAGTTAGAAGAGAAGCTAGCTGAGTTTGATCAAAAGCAAACTGATATTGAAGGTAAAAGAGACTTACAATCCGCTGAGAACGACGAGAGGCAAGTGGCAATGGGGTTGAAGATGGATACCCAATTTTCCATTCTTCGTGAGGAGATGAAAACCATCCTAGCACATCTGGAGGAGGGGAAATAAGGAGAAAAGAAAACGACATCCTCGGGAGGACTGTTACCGATAAGGGGAAGAAAATTATGGATGAGGAATCGGTTAGGAAATCGAAGGAAAGTGGGGAAAAGGAGATAGCCGATAACTCCAATGAGAGCGAAGGTATAAGCGCACCGTGTGTGAAGGAGGTTCCATTGTTTGATATGAGGTTACGTAAACTTGAAGTGCCAATCTTCAAGGGAGAAGAAGATGAGGATCCGGATGGATGGTTGCATCGGGTCGAACGATACTTCGTGGTCAATCAGCTGACTGAGAGGGATAAACTGGACGGTGTTGTGTCTGGAGGGGGAAGCCCTCGATTGGCATCAATGGGAGAAGGAAAGGACACCGATTACCAGTTCGATAGAATTTCGTTGACTGCTGCTGGAACGATTCCGACCTTCATCGCAGGGGGATCGATACACACGTCTGATGAAACTCCAGCAGGATACAACGGTGAGGGAGTATCGCCGGAGGTTTGAAAGATATTCGACAGGGATGAAAGAGGTATCTGACGGCGTGCTTGAGGGCAAATTTGTGAGTGGGCTTAGAGAGGATGTTCAAAGTAAGATGAGAAAATTGCAACCCGTAGGCCTTAAGGCCAAGATGTTGATGGCCCAATTGATTGAAGATGACCGCCTGGTCCAACAGAAGGGAGGGAGTGTTAAAAATACAGCTGGGTCGAAACATGGGTTGGCCTGGATCGGGTCCACACCCAGCGGGTCAAGTGGATCGAATAGTATGGCCTCTAACGCTTGTACAATTTCGTTAAGCCCTAATCGAGCAACTTCGGCGACCACCATTACGCATGTGAAAAAATCGGGAGTGAAGGGCAGTCTTGGTCCCTATCGCCGATTGAGTGAAGCAGAACTACGTGCCAAGAAGGAGAAGACTCTGCTTTAAGTGTGATGAAAAATTTTCTCCTACCCATCGCTGTAAAAAGAAAGAGCTGCAAGTGTTGATTGTTCGAGATGGAACCGAAGATTGGGGGCAAGAGCCGTGTATGGAGGGGGAACTGATTACCATGATTGACGATGATGAGTTAGAAGTGTCGGCTGAAGGACCCGAAGTAGCCACGCTGTCACTAAATTCGTTGGCGGGTTTCTCATCCCCCAAAACTATAAAGGTCCGAGGTGAGATTGGAGGTAAACAGGTGGTGGTGTTAATAGATGGAGGGGTAACACACAACTTTATGTCGGAAGAAATCATTCGTGCCTTGAACCTGCCGATTTCGCCGTCTTCAAACTACGAGAATTGTGTTGGGGACAAGGGGGTCCGTGCAAGCTACTGGAATTTGCAAAGGTGTGATCTTAACTATCTCGCATTTAAAAATTGTTCATGACTTCCTTCCCCTTCCTTTGGGCAGTGTTGATGTTATATTAGGTGTGTCGTGGCTGGCAACGTTGGGCAAAATCCAGTTTGATTACGGCAGCTCTGAAATAGAATTCTACCTGGGAAACTGGCTGGTTCAACTACGCGGTGATCGTAGTTTGGTAAAATCCCAGGTTTCGTTGAAATCTATGATGAAGACCCTTGGTGGAGAGGACCAGGGCATCTTGATTGAGTTGAATGAGGTGGCGAAGGGAATGGCAGAAGCAGAGACAATCTAGAAAGAAAAAGACTTTCCTGAACCGATTGGATCTAACCTTCAAAGGTACACTGCAGTTTTTGAAGGCTTGCACAATCTTCCCCCAGTTCGCAGCCGTGATCATGCGATTGAATTGGAACCAGGTGTGGGATCGATAAATGTTTGTCCATATCGATACCCTCAGTTTCAGAAAGATGAGATTGAGAAATTAGTGAGCGAGATGCTGATGGCAGGGATTATTCAACCAAGTAAGAGCGCATTTTCGAGCACCTGTGCTACTGGTTAAAAAGAAAGATGGTAGTTGGCAGTTTTGTGTGGACTACCGAGCATTGAACCAAGCTACAATCCCAGGTAAGTACCCAATTCTCGTTGTTGATGAATTACTAGATGAATTGTTTGGTGCGTCGGTTTTTTCTAAAATCGATCTTAAGTCAGGGTACCACCAGATTAGAGTGAAACCAGGGGATGTTCATAAAACGACCTTTAGGACACATGAGGGACATTATGAGTTCTTAGTGATGCCCTTTGGGTTACGCAATGCTCCATCCACCTTTCAATCGATAATTATTTGAGGAAGTTTGTGTTAGTCTTCTTTGACGATATATTAATTTACAGCCATTCCATGGGCGAGCATGAAAAGCATCTTGAGATTGTCCTGGGTCTCTTAGTGACTAACCGGTTTGTAGCCAACTTGAAGAAGTGCCAGTTCGGGGTAGCACGGATAGAGTATTTGGGCCACATTGTCTCGGCTGAGGGAGTTGCAGCCGATCCTTCAAAATTGGAGGCTATGAATCAGTGGCCAATTCCTCGAACCATCAAGGAGCTTCGGGGGTTTCTGGGGTTGACAGGGTATTATCAAAAGTTTGTGGCTAACTATGGCACCATTGCCTTGCCGTTAACGCAACTTCTCAAGAAAGGGAATTTTTCATGGTCCTCTGAGGCCGAAGAGGCTTTTATCGCTGGCGCGCTATGATGACAGTCTTTTGTTAGGGTTGCCAGATTTCACCACTCCCTTTGTGGTTGAGACGGATGCTTCAAGTGTGGGGGTGGGTGCTATACTCATGCAGAATCAACGACCGTTAGCATACTTCAGTCAAGCCTTACCCCCTACCCACCGTCTCAAAACTGTCTATGAACGAGAGTTAATGGCAATTGTCTTTGTAATACTAAAGTGGCACCCTTACTTGTTGGGTGGGAAGTTTATAGTATGGACTCATCAGAAGAGTTTGAAATTTTTACTGGAGCAACGTGTTATTGCAGGGGAATATCAGCGTTGGATTGCAAAGTTGCTTGGCTACGATTTCTCCATAAAATACAAACGGGAACTGAAAATTCGGCAGCTGATGCTTTGTCTAGGCTTCCACCAACCCTTGAGTTTGGATTATTAAGCGTGGTAGGAGGCATCAATACTGTGGTGTTAGTGGAACAAGTAAAAGGGGATGCGTCATTCAATGCAATCTAGCAGGCTCTAGTGAATGGCAGCGAGGTACCCAAGGGCTATGCCTTGAGAGGGGAGTTACTCTGTTATTACGGTCGGATTGTCCTTCCTCCATCTTCGCCTACTATACCCTTATTGTCGAATGAGTTCCACAATAGTCCAGTGGGAGGCCATCAGGGTGCTTTAAAAACATATCAAAGGTTGGCTCGGGAAGTCTATTGGAAGGGTATGAAGGCGCAAGTAAGTGAGTTCGTTGCCGAGTGCACTATATGTCAGCAAGCTAAGCATCTGACCTTAGCCCCAACGGGCCTCCTGCAAGCTTTGCCTATCCCAGACCATGGGAGGACATTTCCATGGATTTTATCGAAGGATTACCAAAGTCGGAAGGGTATGATGTGATTTTTGTTGTGGTGGATCGCCTATCCAAGTATGCTCACTTCATCCCTTTTAAACATCCTTTTAATGCGGTGAAAGTAGCTGTTGTTTTCATTCGCGAGATTGTGAGATTACATGGCTGCCCGAAGAGTATTATTTCTGATAGAGACAAGATCTTTACCAGTTTGTTTTGGGAGGAGTTGTTTCGAGCATTGGACACGCAATTAAGGCGTAGTAGTACTTATCACCCTCAGACGGATCGACAGACAGTGGTGGTAAATCGAGGGGTGGAAACTTATCTCTGTTGTTTTGCGATGACCACCCCTAAACAATGGATGAAATGGCTAGCTTGGGCAGAGTATAGCTATAATACTACCGTTCTCGCAGCTACAAAGTTGACGTCGTTCGAAGTTGTGTACGGTCGCCCTCCACCTCCATTGTTGGGGTATGCAACTAACACTACATGTGTAGCTGAGGTTGACAATCAACTCAAGGATCGTGATGCTATGCTTCGAGTGTTAAAAGAATGTTTGGGGAAGGCTCAACAACGCATGACTAAGTATGCTAATGAGAAGCGTCGTGATGTGCAATATCAGGTAGGGGATTGGGTTTATCTTAAGTTGCACCCTTATCGCAAACTACGTTGGGGCATTATAAAAACCCGAAGTTGGCTCCACGGTTCATTGGCCCATTTCAGATTGTCTCTCGTGTGAGACCAGTCGCATATCGCGTGGCTTTGCCACCAGGTACACCTATTCATCCTGTCTTCATGTATCAGTGTTATGAAAGGCTATTGGGCAAACTATGTCGATTTTCCCTATACCGCAAGACTTGGTTGCAGACATGAGTACCTGCTGGCGTCCAACGCAAGTCCTAGGCGTCCGCAAGACTTCTAGCAATGAGGACACTACCGAAGTGCTCATCCAATGGGAGAATGCACTTGAGGAAGATGCTACTTGGGAGCTTATGTCCACCATTAGTGTGCAATTTCCTGATTTCCACCTTGAGGACAAGGTGGCTCTTTGGGAAGCGGGTATTGATAGACCCCCTATCACGAAAGTGTATACTCGAAGGGGAGGTAAGAAGGGTAGGGGAGGGAAATAATTTGTATGTGAGCCCGGGTTGGTTAGAGGGGTGAGAATGGTTGTTATAGGTGGGAGTGAGTGAGTGGAAGGGGTATCTTTTTGTCTATCTTTGTTAGTAGGTTTCTCTGAGGAGAATGGTGGAAGAGGGGGGAGCTCTAAAAAACTCCCTGTGATTTGAAAAATAAAATTGATTGTGGCTAAGGCCTATCAATATGTTTGTTTCAAATAGGTTCCTAAACTTATAAAAAGTCTAATAGGTTCTTAAACTTTCAATTTTAAGGCTAATAGGTATTTGAAATTTAAAAAGTGTCTAATAAGTCTCTAAACTTTCGATTTTGTATTTAATTAATCATTGAGCTTTCAATTTTATATCTTCTTTTTTAAACAAGAAATAAGACTATTCGTTGATATAATGAAAAAAAGGTTATTGCTCAAAAGATACAAACTTCACAATGGGGTGAAAAAACAAAAACATAACAACAAACTACAAAAATGGTAAAGAAAATCATAACAGATTATAACAACAGATAAGCTTTAAAGGATATATAAATGCACTCCAATTTAGACAAATATCATGAAGTGAAAATCCTGCGAACGCCTTTGACAAGGAACACCAAGAAAAAGTCTTAGACGAGCTGATTCAAATCTATCAATCCAAGGAAGATGCTTTTTCTGAAAATCCTTTGATTTCATTCCAACCAAAGTTCTTAAAGTAAAGTGTTAGGTATCCGATTCAAAGACTTGCAAACTTACTCAAAACACATACTCTAACGACAATATAGAATTAATCGAAACCAACCCTCCATTAATGAGAGTTCTTCAATATCGAAGGGGTTATTTCATTAAGGTGAATAGATAGAGTAACTTACCAAATGGTTAACAAAGATTCCCAACCATTCGAGAGGCTGGTTCTCTCCCCACAAGCCTGCTTTCACTCAAAACCAAAAACATGCCTCACTCGGATCACACCCCTCTATAAAAACTCTCACTCCCATGCTCCTGACTGTACAAACAATTCTTCATTCCCTAGTGATCCCTGTCCCTATTGACAATTACGTCTATTTTAACTTTTTAAGGATGAAGATACTCTCAACCATCTTTTTTTCAATTGCTCCTATGCAAGGCTTTGTTGGACGCAAACCTACTCAACATCGTTTTGAATTCACAAACCTATTAGACACAAAACTGAAAGTTAGGCCCTGTTTGATAACCATTTGATTTTTGAAAAATATGCTTGGTTTTCTATAATTTCTCTTCTTCTCTCCAATGATTTCCATCTTTCTTGAGGCACCATTTAAGTTTCTAGGCAAATTTTAAAAACAAAAACAAGTTTCTGAAGACTATTTTTTTTAGTTTTCAAAACTTAGCTTGGTTTTTAAAAACATACGTCCAAAGTAGATAAGAAAACATGGAAACTCATTGATAGAAGTAGTATTTTTAGGCTTAATTTTCAAAAACTAAAAACTAAAAACCAAAAGGTTATCAAATGAGGACTTAATGTCCCAATTTTGTCTGACAAATTTGTTGATTTTAATAAATATTAAATGTGTCAAAAATCTATTAGGCACAAAATTGAAAGTTCAAGAACTTGCTAAACACAAAATTGAAAGTTGAGAACTCATTAGATATTTATTAAAGTTCAAGGACCTAGACACAATGTATACGAAAGGTTAGGGACTCTATTTGTGATTTAACCTTTATTTTTATGAAATAACTAATATGCAGAAAATGAAACATAATAGGAAAACAATATATTTGGGGAGTGAAGAACGTAACTTTTTTGAGCTTATAAGTACGAGAACATAATTAATTTGTACTGATATATTTTAAAAACTTAGAATCCCATTGTCTTCCAAATGTAAATATCATATGCTAAAGGAAACTTATTATAAAAAAAACAATTCGAATGTATGAAAATATTCATATATTTAAAAATGAATATTGTAATAAACGTATTCTCGTCCCATATCCTGTTATTTATTTAAAAAAAACATGATGTAATGGTGTTCATGTTGTGTTGCACATATGTTGCATGCTCCTGTCTGTCTTTTGGAGATGATATCTATAATCCATATGTTATGTATAATCCATATGTTAGGTATCCAAACACAAAAATATAGAGAACACTAAGAAACTGATATATTGCAATCACTATGAAGGAAATTACAATAACCAATAGCCTTTCGAGAGGGCTCTCCTTAAGTCCTACAATGGATACTACCGAAATGATGCACACCAAAATAAGAACCCTAACACTACTATTTATAACCAAGACACCCTAGCTAAAAATCCCAAAATACCTCTTACTGATTACTAAGCTCCCACATAGATCCTCTACTATCCCATACTAGTACTCTCACAATACCGGACCCTTCAAAACATATCTTGTTCTCAAGGTGTGGGTCAATCAATACAAATGCCAAACAAGGATCCAAAATAAAATAAAGAAAAAAAATAAAGACGCTAGATACAAAAAAAAAAAAAACCCAATAATCCCAACCCCCAAATTCTCGTAAACACTTGAAACTTGCTGTCTCATTAAACCTTTTCAAAAATAAATGGGCCTTGTCATGCTAATCCAACCCAAAACCAAACCCAAGCTCATGTTGCTACTTGGTCCAACACTTGGTCCCACCTTCTGATAATTCACATGGTTAGAAATTGGATATTCCACCTCTTTACGAAAATTGCAGCTCCTTCCTCGATCCTTCTTCTTCGTCCCTTTGCTGATGGCGATGACCGCCCCTACATCTTCTAATGGTGATTGATCAGTGGAGATGGTCGGCGACGTGGGTGTAAAGCAAACATAATTGCGGCTAGGGCTACTTCCTTCAAAGGATAGACCATCGCTTATGTTTTTGGGGTTTAAAACAAAGAGATATCCATCCCAAGAGCCTAACTTGTAAAACAATGACATTTTCTACTATTGAAAAATGATGGGCCTGGTCCATACAAATTAAATCTAGCTCATTAAAAGATAGCATGTCAAGCTCTTGCTCAAGAAGCCCATGGTCTCCTCTTTTTCTAAAATCATCTAAGTCCACGTGATTAGGGTTAGGGTTCCTCAACCAACCAATTTTTTGACTTCTTTTTCTTCCTTCATGGTTCACCAATTCGTAACTTGTCGGTGTGCAATACTTGCAATGATGCCTTCCCCTTGGTTTCATCTTCGGCCATACAAGTAATTGCCACCGGTAACAACCTCCATCAATGGTTTTCATGTCTTCACGCCCCTTGAGTCTGTACCTCCTCCACAGTTTGTTCTCCGACAATATCTTGATCTGCCGTCGATAATGGCCTTTATCTACGATTTCTTTGTTGGTTCCCCAATCTACTACCTCCACCAATTCTACATGACACTTATATCTGCGCCTTCCTTTAATTTTTCGCCCCATCAGTTTTAGATGGTGGTTTTCCTCTGAATTTCTGACTTCGTTACAACAAATATCATTCCCACCCCTTTGTGCACATTCCTCGAATTCCAGAACTATACATTTCGGTCGATCCTCATTCTCGATCGCATGAGCTTTATTTTCCATCTTCGACGTTTTTAAGACTTTCTTTCTCCACATTCGATGGAAACTTGATTGAACTTTGCATTTCTTAGATTGGATCAACTTGTGATTACCTGTTTCTTCTTCATCTCTCTTGCACTGAGATGATTCATCTTCATCAACAACCATGGGTTCTACTAATTCTTCCTTCTTTTCTGCCATCATTTGTTTATGAGAAGAATATACAACAAGTGCATCAGTTATTGCTATTGGAAATTTCAGACAATATCGTTGCCACCAATTGATCCATGTTCTTGGCTATCCTCTGCAAAGCTTCTTTCATTTCAACTACATCTTTCTCTATTCTCTTTATCCTCTCTTTCGGTTGTTTTTGCACCATTCCCCAGGATGAACGTGCTCTAATACCAATTTGTTAGGTATCCAAACACAAAAAATACAAATAACACTAAGAAACTGATATATTGCAATCACTATGAAGGAAATTACAATAACCAATAGCCTTTTGAGAGGGCTATCTCTCTCGTTAAGTCCCACCATGGACATTACCAAAATGATGCACACCAAAATAAGGACCCTAACACTACTATTTATAACCAAGACATCCTAGCTAAAAATTCCAAAATACCCCTGACTGGTATACTATTAATCTCCCACATAGATCCTCTACTATCCCATACTAGTACTCTCACAAAAGACTAATAGAAGTTCAATCTGATATGTACTTGAAACTTTTATGCGAGTACATATGGAAGTGTTGATGATTAAATAGTAAATTCTCAAATCACTTTGAGCTTATTATCTCGGATGAATGATTCATCTATTACTGAAGTGGCATCTCTTGTTTCTACTTGAAAGCTGTAAACGTTGGTTTCATTGCTTCCAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAGGACTACTCCTCTGATAAAACCGAAACTTTCGACCATGAAAGCGATGCAGAAAAGAACTGACGAGGAATATTGTTGAGACTTAAAAGCATGTAATTTGTATGACTAGCTGATCAGGGAGTGTTACAAGAAATAAGTTGGATTTGCTATCTGTAATGCAGTATGCTGAATTTTTTCTTTTTATTACAACAAATATGGAGAGTGAAGATTTGAATCTCTGACTTTAAGAAAAAGAGTAAACGTCTTTACTGTTGAACTATGCTCATGTCGACATTATACAAGTAGGGAACTGTGTGACATACTATAGTTTGAAAAATATTTATTTTTCTTGGATCA

mRNA sequence

CTGACATTTAGCAACCTTCCGCCATCAGCATTTTCAGAGCGCGAAGTCAAAAGAGCGCCATGGACACAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCGCAACCGAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTATCAGCACCGCTTCGAGCTCTCCATTACCGATGGCCTCAACGCTTGGACGTGCCATGCAACGGAGGACGAGGTTCGTTTGCGCGCTACACAATGGGATCAAGAACCGTCGGACTATGTGGCGTTAGCCGAGCGCTATTTAGGGTTTCAGCAGCCTGGTTCGGTTTATGGTTTTGCCGATGCTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAGGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCGACCAACGTCTGATAATAAGATAACAACAACAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACGCAATCGTTTGAGAGGCTGAAAGTGGAGTCTGAGAAGTGTTTGGCTCAAAGCGAGAAGATTCGTGAAGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAGGACTACTCCTCTGATAAAACCGAAACTTTCGACCATGAAAGCGATGCAGAAAAGAACTGACGAGGAATATTGTTGAGACTTAAAAGCATGTAATTTGTATGACTAGCTGATCAGGGAGTGTTACAAGAAATAAGTTGGATTTGCTATCTGTAATGCAGTATGCTGAATTTTTTCTTTTTATTACAACAAATATGGAGAGTGAAGATTTGAATCTCTGACTTTAAGAAAAAGAGTAAACGTCTTTACTGTTGAACTATGCTCATGTCGACATTATACAAGTAGGGAACTGTGTGACATACTATAGTTTGAAAAATATTTATTTTTCTTGGATCA

Coding sequence (CDS)

ATGGACACAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCGCAACCGAACGAAAGCGCCTCCATCTTCGTCAAAGGCACTTGGTATCAGCACCGCTTCGAGCTCTCCATTACCGATGGCCTCAACGCTTGGACGTGCCATGCAACGGAGGACGAGGTTCGTTTGCGCGCTACACAATGGGATCAAGAACCGTCGGACTATGTGGCGTTAGCCGAGCGCTATTTAGGGTTTCAGCAGCCTGGTTCGGTTTATGGTTTTGCCGATGCTGGAAATGGGGACAAGAGGCTTTCTTGGACATTTGACAAGGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCGACCAACGTCTGATAATAAGATAACAACAACAGGAATATTGGACTTTCTCATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACGCAATCGTTTGAGAGGCTGAAAGTGGAGTCTGAGAAGTGTTTGGCTCAAAGCGAGAAGATTCGTGAAGAAAAGGTGGAGTTTGAAACTGCAATTTATGCAAAGTTTCTAAATGTCTTGAACGCAAAGAAGGCAAAACTTAGAGAGTACAGAGATCAGCTTTCAAAACAGACTACTACTAGCAGCAAACTGAAACAAGAAGAGGACTACTCCTCTGATAAAACCGAAACTTTCGACCATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN

Homology

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BLAST of Tan0001703 vs. ExPASy Swiss-Prot
Match: Q682V0 (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 268.5 bits (685), Expect = 7.3e-71
Identity = 140/231 (60.61%), Postives = 177/231 (76.62%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWD 64
           +HTCL+LE+ + A P     IFVKGTW+  RF++S+TDG ++W C+ATE+EV  RA QWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTSDNKI 124
           Q  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFL 184
            T GILDFLM+ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+ +EK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDH-ESDAEKN 235
           +VLNAKKAKLR  RD+        S    EE+ S+DK E+F+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK------EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Tan0001703 vs. ExPASy Swiss-Prot
Match: Q13426 (DNA repair protein XRCC4 OS=Homo sapiens OX=9606 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 5.9e-04
Identity = 57/229 (24.89%), Postives = 95/229 (41.48%), Query Frame = 0


Query: 22  SASIFVKGTW---YQHRFELSITDGLNAWTCHATEDEVRLRATQWDQEPSDYVA-LAERY 81
           S + F++ +W    +  F +++TDG +AWT   +E E+   A     E   YV  L +  
Sbjct: 15  SITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKAL 74

Query: 82  LGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTSDNKITTTGILDFLMDAN 141
           L    P  VY F    N  K   + F ++ +K       R  S N        + + +  
Sbjct: 75  LSGAGPADVYTF----NFSKESCYFFFEKNLK---DVSFRLGSFNLEKVENPAEVIRELI 134

Query: 142 IRLSEEVVRKTQSFERLKVESEKCL-------AQSEKIREEKVEFETAIYAKFLNVLNAK 201
               + +       E L+ E+E+ L        + EK    K   ET +Y +F+ VLN K
Sbjct: 135 CYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKCVSAKEALETDLYKRFILVLNEK 194

Query: 202 KAKLREYRDQLSKQTTTSSK-LKQE------EDYSSDKTETFDHESDAE 233
           K K+R   ++L        K +KQE       + ++D+   +D  +D E
Sbjct: 195 KTKIRSLHNKLLNAAQEREKDIKQEGETAICSEMTADRDPVYDESTDEE 236

[Close]

BLAST of Tan0001703 vs. NCBI nr
Match: XP_022141947.1 (DNA repair protein XRCC4-like [Momordica charantia])

HSP 1 Score: 415.2 bits (1066), Expect = 3.7e-112
Identity = 211/235 (89.79%), Postives = 219/235 (93.19%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASI-FVKGTWYQHRFELSITDGLNAWTCHATEDEVRLR 60
           MD IRHTCLKLEVP+ AQ NES SI FVKGTW++HRF+LSITDGLNAWTCHATEDEVRLR
Sbjct: 54  MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHATEDEVRLR 113

Query: 61  ATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPT 120
           A QWDQEPSDYVALAER+LGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRW C+P 
Sbjct: 114 AEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWNCQPA 173

Query: 121 SDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAI 180
           SDNK TT GILDFLMDANIRLSEEVVRKTQSFERLKVESE CLAQSEKI  EKVEFETAI
Sbjct: 174 SDNKKTTAGILDFLMDANIRLSEEVVRKTQSFERLKVESENCLAQSEKISGEKVEFETAI 233

Query: 181 YAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           YAKFLNVLN+KKAKLR YRDQLSKQTT SSKLKQEE+YSSDKTETFD ESDAEKN
Sbjct: 234 YAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFDDESDAEKN 288

[Close]

BLAST of Tan0001703 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa] >TYK06916.1 DNA repair protein XRCC4 [Cucumis melo var. makuwa])

HSP 1 Score: 413.3 bits (1061), Expect = 1.4e-111
Identity = 209/234 (89.32%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+E +SIFVKGTW  HRF+LSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLSWTFDKEGMKLEWRWKC+P S
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT  IL+FLMDANIRLSEEVVRKTQS ERLK ESEKCLAQSEKI +EKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLNAKKAKLREYRDQLSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFDDESDAEKN 233

[Close]

BLAST of Tan0001703 vs. NCBI nr
Match: XP_038888651.1 (DNA repair protein XRCC4 [Benincasa hispida])

HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111
Identity = 207/234 (88.46%), Postives = 216/234 (92.31%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD  RHTCLKLEVPTNAQPN+ +SIFVKGTW  H F+LSITDGLNAW+CHATEDEV LRA
Sbjct: 1   MDATRHTCLKLEVPTNAQPNDRSSIFVKGTWNHHHFDLSITDGLNAWSCHATEDEVLLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYVALAERYLGFQQPGSVYGF DAGNGD+RLSWTFDKEGMKLEWRWKC+P S
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSVYGFTDAGNGDRRLSWTFDKEGMKLEWRWKCKPAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT GILDFLMDANIRLSEEVVRKTQ FERLK ESE+CLAQSEKI +EKVEFETAIY
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQLFERLKSESERCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLNAKKAKLREYRDQLSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFDDESDAEKN 233

[Close]

BLAST of Tan0001703 vs. NCBI nr
Match: KAG6571850.1 (DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 411.8 bits (1057), Expect = 4.1e-111
Identity = 205/234 (87.61%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA
Sbjct: 357 MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 416

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLSWTF+KEGMKLEWRWKCR  S
Sbjct: 417 EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 476

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+Y
Sbjct: 477 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 536

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLN KKAKLREYRDQ  KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Sbjct: 537 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEY-SDKTESFDDDSDAEKN 589

[Close]

BLAST of Tan0001703 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 411.8 bits (1057), Expect = 4.1e-111
Identity = 205/234 (87.61%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLSWTF+KEGMKLEWRWKCR  S
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLN KKAKLREYRDQ  KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEY-SDKTESFDDDSDAEKN 233

[Close]

BLAST of Tan0001703 vs. ExPASy TrEMBL
Match: A0A6J1CL88 (DNA repair protein XRCC4-like OS=Momordica charantia OX=3673 GN=LOC111012197 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 211/235 (89.79%), Postives = 219/235 (93.19%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASI-FVKGTWYQHRFELSITDGLNAWTCHATEDEVRLR 60
           MD IRHTCLKLEVP+ AQ NES SI FVKGTW++HRF+LSITDGLNAWTCHATEDEVRLR
Sbjct: 54  MDAIRHTCLKLEVPSIAQSNESRSIFFVKGTWFRHRFDLSITDGLNAWTCHATEDEVRLR 113

Query: 61  ATQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPT 120
           A QWDQEPSDYVALAER+LGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRW C+P 
Sbjct: 114 AEQWDQEPSDYVALAERHLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWNCQPA 173

Query: 121 SDNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAI 180
           SDNK TT GILDFLMDANIRLSEEVVRKTQSFERLKVESE CLAQSEKI  EKVEFETAI
Sbjct: 174 SDNKKTTAGILDFLMDANIRLSEEVVRKTQSFERLKVESENCLAQSEKISGEKVEFETAI 233

Query: 181 YAKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           YAKFLNVLN+KKAKLR YRDQLSKQTT SSKLKQEE+YSSDKTETFD ESDAEKN
Sbjct: 234 YAKFLNVLNSKKAKLRAYRDQLSKQTTGSSKLKQEEEYSSDKTETFDDESDAEKN 288

[Close]

BLAST of Tan0001703 vs. ExPASy TrEMBL
Match: A0A5A7SK69 (DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002240 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.7e-112
Identity = 209/234 (89.32%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+E +SIFVKGTW  HRF+LSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLSWTFDKEGMKLEWRWKC+P S
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT  IL+FLMDANIRLSEEVVRKTQS ERLK ESEKCLAQSEKI +EKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLNAKKAKLREYRDQLSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFDDESDAEKN 233

[Close]

BLAST of Tan0001703 vs. ExPASy TrEMBL
Match: A0A1S3BZW1 (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 6.7e-112
Identity = 209/234 (89.32%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+E +SIFVKGTW  HRF+LSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYVALAERYLGFQQPGS+YGFADAGNG KRLSWTFDKEGMKLEWRWKC+P S
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRLSWTFDKEGMKLEWRWKCQPAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT  IL+FLMDANIRLSEEVVRKTQS ERLK ESEKCLAQSEKI +EKVEFETAIY
Sbjct: 121 DNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLNAKKAKLREYRDQLSKQTTT SKLKQEE YSSDKTE+FD ESDAEKN
Sbjct: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFDDESDAEKN 233

[Close]

BLAST of Tan0001703 vs. ExPASy TrEMBL
Match: A0A6J1GJL0 (DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 205/234 (87.61%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYV+LAERYLGFQQP SVYGFAD GNGDKRLSWTF+KEGMKLEWRWKCR  S
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLN KKAKLREYRDQ  KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEY-SDKTESFDDDSDAEKN 233

[Close]

BLAST of Tan0001703 vs. ExPASy TrEMBL
Match: A0A6J1I7A5 (DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 1.7e-110
Identity = 204/234 (87.18%), Postives = 215/234 (91.88%), Query Frame = 0


Query: 1   MDTIRHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRA 60
           MD IRHTCLKLEVPTNAQP+   SIFVKGTWYQHRF+LSITDGLNAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  TQWDQEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTS 120
            QWDQEPSDYV LAERYLGFQQP SVY FAD GNGDKRLSWTF+KEGMKLEWRWKCR  S
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKRLSWTFNKEGMKLEWRWKCRQAS 120

Query: 121 DNKITTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIY 180
           DNK TT GILDFLMDANIRLSEEVVRKTQSFE+LKVESEKCLAQSE+I EEKVEFETA+Y
Sbjct: 121 DNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVEFETALY 180

Query: 181 AKFLNVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDHESDAEKN 235
           AKFLNVLN KKAKLREYRDQ  KQTTTSSKLKQ+++Y SDKTE+FD +SDAEKN
Sbjct: 181 AKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEY-SDKTESFDDDSDAEKN 233

[Close]

BLAST of Tan0001703 vs. TAIR 10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 268.5 bits (685), Expect = 5.2e-72
Identity = 140/231 (60.61%), Postives = 177/231 (76.62%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWD 64
           +HTCL+LE+ + A P     IFVKGTW+  RF++S+TDG ++W C+ATE+EV  RA QWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTSDNKI 124
           Q  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFL 184
            T GILDFLM+ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+ +EK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDH-ESDAEKN 235
           +VLNAKKAKLR  RD+        S    EE+ S+DK E+F+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK------EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Tan0001703 vs. TAIR 10
Match: AT3G23100.2 (homolog of human DNA ligase iv-binding protein XRCC4 )

HSP 1 Score: 268.5 bits (685), Expect = 5.2e-72
Identity = 140/231 (60.61%), Postives = 177/231 (76.62%), Query Frame = 0


Query: 5   RHTCLKLEVPTNAQPNESASIFVKGTWYQHRFELSITDGLNAWTCHATEDEVRLRATQWD 64
           +HTCL+LE+ + A P     IFVKGTW+  RF++S+TDG ++W C+ATE+EV  RA QWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSVYGFADAGNGDKRLSWTFDKEGMKLEWRWKCRPTSDNKI 124
           Q  S+Y+ LAE+YLGFQQP SVY F+DA  G KRLSWTF+KEG KLEWRWKC+P+ D+K 
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSDDSKK 143

Query: 125 TTTGILDFLMDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFL 184
            T GILDFLM+ANIRLSEEVV KT+SFE+++ E+E+CLAQ EK+ +EK EFE+A YAKFL
Sbjct: 144 ITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESATYAKFL 203

Query: 185 NVLNAKKAKLREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDH-ESDAEKN 235
           +VLNAKKAKLR  RD+        S    EE+ S+DK E+F+   SD EK+
Sbjct: 204 SVLNAKKAKLRALRDK------EDSVRVVEEEESTDKAESFESGRSDDEKS 242

[Close]

BLAST of Tan0001703 vs. TAIR 10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4 )

HSP 1 Score: 89.4 bits (220), Expect = 4.3e-18
Identity = 58/102 (56.86%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 134 MDANIRLSEEVVRKTQSFERLKVESEKCLAQSEKIREEKVEFETAIYAKFLNVLNAKKAK 193
           M+ANIRLSEEVV KT+SFE++K E+E+CLAQ EK+ +EK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 194 LREYRDQLSKQTTTSSKLKQEEDYSSDKTETFDH-ESDAEKN 235
           LR  RD+        S    EE+ S+ K E+F+   SD E++
Sbjct: 61  LRAVRDK------EDSVRAVEEEESTYKAESFESGRSDDEQS 96

The following BLAST results are available for this feature:

BLAST of Tan0001703 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682V0	7.3e-71	60.61	DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2	[more]
Q13426	5.9e-04	24.89	DNA repair protein XRCC4 OS=Homo sapiens OX=9606 GN=XRCC4 PE=1 SV=2	[more]

BLAST of Tan0001703 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141947.1	3.7e-112	89.79	DNA repair protein XRCC4-like [Momordica charantia]	[more]
XP_008455175.1	1.4e-111	89.32	PREDICTED: DNA repair protein XRCC4 [Cucumis melo] >KAA0031462.1 DNA repair prot...	[more]
XP_038888651.1	1.8e-111	88.46	DNA repair protein XRCC4 [Benincasa hispida]	[more]
KAG6571850.1	4.1e-111	87.61	DNA repair protein XRCC4, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022952201.1	4.1e-111	87.61	DNA repair protein XRCC4 [Cucurbita moschata]	[more]

BLAST of Tan0001703 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CL88	1.8e-112	89.79	DNA repair protein XRCC4-like OS=Momordica charantia OX=3673 GN=LOC111012197 PE=...	[more]
A0A5A7SK69	6.7e-112	89.32	DNA repair protein XRCC4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BZW1	6.7e-112	89.32	DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1	[more]
A0A6J1GJL0	2.0e-111	87.61	DNA repair protein XRCC4 OS=Cucurbita moschata OX=3662 GN=LOC111454947 PE=4 SV=1	[more]
A0A6J1I7A5	1.7e-110	87.18	DNA repair protein XRCC4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470647 ...	[more]

BLAST of Tan0001703 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23100.1	5.2e-72	60.61	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT3G23100.2	5.2e-72	60.61	homolog of human DNA ligase iv-binding protein XRCC4	[more]
AT1G61410.1	4.3e-18	56.86	DNA double-strand break repair and VJ recombination XRCC4	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 184..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..234
None	No IPR available	SUPERFAMILY	58022	XRCC4, C-terminal oligomerization domain	coord: 125..206
IPR038051	XRCC4-like, N-terminal domain superfamily	GENE3D	2.170.210.10		coord: 14..123 e-value: 2.4E-6 score: 29.0
IPR014751	DNA repair protein XRCC4-like, C-terminal	GENE3D	1.20.5.370		coord: 124..216 e-value: 3.7E-14 score: 54.5
IPR010585	DNA repair protein XRCC4	PFAM	PF06632	XRCC4	coord: 36..232 e-value: 7.2E-12 score: 44.8
IPR010585	DNA repair protein XRCC4	PANTHER	PTHR28559	DNA REPAIR PROTEIN XRCC4	coord: 1..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001703.1	Tan0001703.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051103	DNA ligation involved in DNA repair
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0051351	positive regulation of ligase activity
biological_process	GO:0010165	response to X-ray
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0005958	DNA-dependent protein kinase-DNA ligase 4 complex
cellular_component	GO:0032807	DNA ligase IV complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016874	ligase activity