Tan0001594 (gene) Snake gourd v1

Overview


Name	Tan0001594
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA repair protein XRCC2 homolog
Location	LG04: 36206266 .. 36208099 (-)
RNA-Seq Expression	Tan0001594
Synteny	Tan0001594

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCCATGTTCTAAAATTCCACGCGCCTTGTTCCGGGAAAAAAACCAAAACCGTTTGCATTAGGCCAATTTCCCTCCAAAGCCGCCGCCGCTCCGGCCAAACAAGGGCGTTGTTATGACGCTTAGCCAGTGGATCGACGGCGATGAGAGCGCAGCGGTGATGCTTGCCAGAGTCCTGAAAGAGCGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGGCCCTCTGGTTCTGCCAAGACGCAGATCTTAATCCAGGTCCAATTATCAAGTTCAATTTGTCCATTTGAACTACTCGAATCAGTTCTAATTGACAATGTCGATGAAAAGTGGATGTTGATTTACCTCGAAAGCATTTCAAGGCAATTTGTGTTCCACTAAAATTAGTCTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGGTGCGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGACTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTCTGAAGCTTCGAATTTTGGAGGCCGATGGCAATGGTGAGCTATATGTGTCATGTAATATATGATAAAATGTTAACATCAAGGTTATCATCACAAGCTACAATTCTGCTTAATGGTATCCCGTAATGCCTGGGGTTATTTCTATGATGTGTCGTGTCTTTGAATTATTATTCTGTATTTGTGTCTTCTTCTGTTATACATTTGATATAGAGCTAGTCTTGATGATGGCTATTCTGCTTGCCTGTTAAAAAAATAACTCTCTCAGAAAAATGAAAATTAACCTTGCTTATGTTCAAAGATGTGTGTGGAGAATTTCCAAGAAAGGTGGGCAATCTAGCACTCTGTCACCATTTAAGACAACGATTGGTTCACCCTTTGGCCTTGGAGAGGAAGAATTTGAAGTCCTTGAGGGCGTTCATTGCTTAATCTAGGTTTTCATCAGTCTTTGTCTGATGGAAGGCTGGGGATATTTCATCTTTACTTTCTTTGTTGGATTCAGTTCGAGCAAATGCTGGGAGTGGGGGCTTTTGCTCTTGGTTCCCTTACCCTCTAAAGGGTTTTCTTGTAAATCCTACTATCATCTTTTGTGTGGCTCTCACTGTCCCTGATCTTTTTTATTTGCTTTGTTATGGAAGGTTACACTGCCCAAGAAAATGCTTTTCTTTACTTGGGAGGTCTTGCATCAGAAAGTTAATACCATGGACTAGATACTTGGACATTCCCCTTTTTTGTTGAGGCTGTAGAGGTGTATTCTTTGCAGGAGAGTGGGAGAAGACTTGAGTCACATTCTCTGGAGTTGCCCCTTTGCCTCTTCAATTTGAACTTGTTTTTTGGAGTCCAGTTTTAGTTGGGCAGAGGCGGTTCTCCATCCTCTTGCTATAAGGGGCACATCCTATGTGGAAGGTCTCCGGAATGGAATGACTTTGACTATCGATTCATTAGTAAGAAACCTTTGCCAACTTTTGAATTGGCGAAACAAGAACTTTATGTGAGAGTTGAAGCCCCAAAAGGGGAATTGGGCATTTTTTTGATAGGGGATCAAGGTGGTTTTCCTTGGAGATGGAAAATTCGCCCGCCGGGCATTGTGTTTTCTTTGCTATTGTTTGGGGCTTATGGTTAGAGAGAAATAAGAGGGGGTTTTGAACCCTTTTTTCGTATAGCTAGTTTGAGGTTTGGATGTTCCTTTTTCTGTTGGACTGTTTTTTCATGTCTTTCATTGTTCTTTCATTTTTCTAGATTTTCTGATTAAAAAAGATGCCGAAGTTTCATGTCAATAG

mRNA sequence

TTGATCCATGTTCTAAAATTCCACGCGCCTTGTTCCGGGAAAAAAACCAAAACCGTTTGCATTAGGCCAATTTCCCTCCAAAGCCGCCGCCGCTCCGGCCAAACAAGGGCGTTGTTATGACGCTTAGCCAGTGGATCGACGGCGATGAGAGCGCAGCGGTGATGCTTGCCAGAGTCCTGAAAGAGCGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGGCCCTCTGGTTCTGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGGTGCGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGACTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTCTGAAGCTTCGAATTTTGGAGGCCGATGGCAATGGTTTGGATGTTCCTTTTTCTGTTGGACTGTTTTTTCATGTCTTTCATTGTTCTTTCATTTTTCTAGATTTTCTGATTAAAAAAGATGCCGAAGTTTCATGTCAATAG

Coding sequence (CDS)

ATGACGCTTAGCCAGTGGATCGACGGCGATGAGAGCGCAGCGGTGATGCTTGCCAGAGTCCTGAAAGAGCGAACCTCCTTGTTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGCGTCGGCAATGTGGTCGAACTTGTTGGGCCCTCTGGTTCTGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGGTGCGCTATGGAGGCTTGGAGTGTTCAGTGGTGTTCATTGACTTGGACTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTCTGAAGCTTCGAATTTTGGAGGCCGATGGCAATGGTTTGGATGTTCCTTTTTCTGTTGGACTGTTTTTTCATGTCTTTCATTGTTCTTTCATTTTTCTAGATTTTCTGATTAAAAAAGATGCCGAAGTTTCATGTCAATAG

Protein sequence

MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNGLDVPFSVGLFFHVFHCSFIFLDFLIKKDAEVSCQ

Homology

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BLAST of Tan0001594 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-36
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 6   WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD--GNG 112
           LPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A+  GNG
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNG 116

[Close]

BLAST of Tan0001594 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-08
Identity = 45/127 (35.43%), Postives = 66/127 (51.97%), Query Frame = 0


Query: 11  ESAAVMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQAA 70
           ES   +LAR+     LKE   +LF     P+H      G+++E  GP G+ KT++L    
Sbjct: 9   ESGTELLARLEGRSSLKEIEPNLFADEDSPVH------GDILEFHGPEGTGKTEMLYHLT 68

Query: 71  VNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNGLDVPFSVGLF 129
             CILPK       GGLE  V+FID D   D+ RL  +L+ R+ ++      + + +G F
Sbjct: 69  ARCILPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSSEE--IIKYCLGRF 121

[Close]

BLAST of Tan0001594 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.0e-07
Identity = 39/106 (36.79%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 11  ESAAVMLARV-----LKE-RTSLFV---PPLHRVPLRVGNVVELVGPSGSAKTQILIQAA 70
           ES   +LAR+     LKE   +LF     P+H      G++ E  GP G+ KT++L    
Sbjct: 9   ESGTELLARLEGRSSLKELEPNLFADEDSPVH------GDIFEFHGPEGTGKTEMLYHLT 68

Query: 71  VNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEA 108
             CILPK       GGL+  V+FID D   D+ RL  VL+ R+ ++
Sbjct: 69  ARCILPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQS 103

[Close]

BLAST of Tan0001594 vs. ExPASy Swiss-Prot
Match: Q97BJ9 (DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=radA PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 26/67 (38.81%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLK 101
           + E  G  GS KTQI+ Q AVNC +PKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTMPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 169

Query: 102 LRILEAD 109
            + L+ D
Sbjct: 170 SKGLDPD 171

[Close]

BLAST of Tan0001594 vs. ExPASy Swiss-Prot
Match: Q9HJ68 (DNA repair and recombination protein RadA OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) OX=273075 GN=radA PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.8e-04
Identity = 26/67 (38.81%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLK 101
           + E  G  GS KTQI+ Q AVNC LPKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTLPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 169

Query: 102 LRILEAD 109
            +  + D
Sbjct: 170 SKGADPD 171

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BLAST of Tan0001594 vs. NCBI nr
Match: XP_022155175.1 (DNA repair protein XRCC2 homolog [Momordica charantia] >XP_022155176.1 DNA repair protein XRCC2 homolog [Momordica charantia])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWI GDE+AA MLARVLK+R SLFVPPLHR+PLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIAGDETAAEMLARVLKQRPSLFVPPLHRLPLRAGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNGL 113
           AVNCILPKEWNGVRYGGLECSVVFIDLDCRLD+SRLSQVLKLRILEA+GNGL
Sbjct: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDVSRLSQVLKLRILEANGNGL 112

[Close]

BLAST of Tan0001594 vs. NCBI nr
Match: XP_022998340.1 (DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +GNG
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNG 111

[Close]

BLAST of Tan0001594 vs. NCBI nr
Match: XP_022998310.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-50
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +GNG
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNG 111

[Close]

BLAST of Tan0001594 vs. NCBI nr
Match: KAG7032399.1 (DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 209.5 bits (532), Expect = 1.9e-50
Identity = 104/123 (84.55%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+AA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG-LDVPFSVG 120
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRL+QVLKLRILE +G+G L VPF++ 
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGELFVPFNID 120

Query: 121 LFF 123
             F
Sbjct: 121 NIF 123

[Close]

BLAST of Tan0001594 vs. NCBI nr
Match: XP_023550059.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.8 bits (530), Expect = 3.2e-50
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+AA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +GNG
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNG 111

[Close]

BLAST of Tan0001594 vs. ExPASy TrEMBL
Match: A0A6J1DLP4 (DNA repair protein XRCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111022310 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.0e-51
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M LSQWI GDE+AA MLARVLK+R SLFVPPLHR+PLR GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIAGDETAAEMLARVLKQRPSLFVPPLHRLPLRAGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNGL 113
           AVNCILPKEWNGVRYGGLECSVVFIDLDCRLD+SRLSQVLKLRILEA+GNGL
Sbjct: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDVSRLSQVLKLRILEANGNGL 112

[Close]

BLAST of Tan0001594 vs. ExPASy TrEMBL
Match: A0A6J1KC81 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.0e-51
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +GNG
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNG 111

[Close]

BLAST of Tan0001594 vs. ExPASy TrEMBL
Match: A0A6J1KC54 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 7.0e-51
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESAA ML RVLKERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +GNG
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNG 111

[Close]

BLAST of Tan0001594 vs. ExPASy TrEMBL
Match: A0A6J1GYJ6 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-49
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+AA ML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +G+G
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSG 111

[Close]

BLAST of Tan0001594 vs. ExPASy TrEMBL
Match: A0A6J1GZX5 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.8e-49
Identity = 99/111 (89.19%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MTLSQWIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+AA ML RV KERTSL VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEADGNG 112
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLDISRLSQVLKLRILE +G+G
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSG 111

[Close]

BLAST of Tan0001594 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-37
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 6   WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD--GNG 112
           LPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A+  GNG
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNG 116

[Close]

BLAST of Tan0001594 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-37
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 6   WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD--GNG 112
           LPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A+  GNG
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNG 116

[Close]

BLAST of Tan0001594 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-37
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 6   WIDGDESAAVMLARVLKERTSLFVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A  ML+RVLK+R  L +PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEAD--GNG 112
           LPK WNG+ YGGL   V+F+DLDCR D+ RLSQ+LK R+L+A+  GNG
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNG 116

[Close]

BLAST of Tan0001594 vs. TAIR 10
Match: AT2G28560.1 (DNA repair (Rad51) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.4e-04
Identity = 20/60 (33.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 40  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQV 99
           G + ELVGP G  K+Q  ++ A++   P     V YGGL+  V++ID++ +    R+ ++
Sbjct: 102 GVLTELVGPPGIGKSQFCMKLALSASFP-----VAYGGLDGRVIYIDVESKFSSRRVIEM 156

[Close]

BLAST of Tan0001594 vs. TAIR 10
Match: AT2G28560.2 (DNA repair (Rad51) family protein )

HSP 1 Score: 41.6 bits (96), Expect = 6.4e-04
Identity = 20/60 (33.33%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 40  GNVVELVGPSGSAKTQILIQAAVNCILPKEWNGVRYGGLECSVVFIDLDCRLDISRLSQV 99
           G + ELVGP G  K+Q  ++ A++   P     V YGGL+  V++ID++ +    R+ ++
Sbjct: 102 GVLTELVGPPGIGKSQFCMKLALSASFP-----VAYGGLDGRVIYIDVESKFSSRRVIEM 156

The following BLAST results are available for this feature:

BLAST of Tan0001594 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	1.6e-36	67.59	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
O43543	2.4e-08	35.43	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]
Q9CX47	6.0e-07	36.79	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]
Q97BJ9	1.2e-04	38.81	DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC...	[more]
Q9HJ68	2.8e-04	38.81	DNA repair and recombination protein RadA OS=Thermoplasma acidophilum (strain AT...	[more]

BLAST of Tan0001594 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155175.1	1.4e-50	91.07	DNA repair protein XRCC2 homolog [Momordica charantia] >XP_022155176.1 DNA repai...	[more]
XP_022998340.1	1.4e-50	91.89	DNA repair protein XRCC2 homolog isoform X3 [Cucurbita maxima]	[more]
XP_022998310.1	1.4e-50	91.89	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima]	[more]
KAG7032399.1	1.9e-50	84.55	DNA repair protein XRCC2-like protein [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_023550059.1	3.2e-50	90.99	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0001594 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLP4	7.0e-51	91.07	DNA repair protein XRCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111022310 ...	[more]
A0A6J1KC81	7.0e-51	91.89	DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1KC54	7.0e-51	91.89	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1GYJ6	3.8e-49	89.19	DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1GZX5	3.8e-49	89.19	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of Tan0001594 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64520.2	1.1e-37	67.59	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.1	1.1e-37	67.59	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.3	1.1e-37	67.59	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT2G28560.1	6.4e-04	33.33	DNA repair (Rad51) family protein	[more]
AT2G28560.2	6.4e-04	33.33	DNA repair (Rad51) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 23..133 e-value: 1.7E-15 score: 59.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 32..103
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 38..99 e-value: 1.1E-5 score: 24.9
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 4..109
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 17..145 score: 14.852778

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001594.1	Tan0001594.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding