Tan0001551 (gene) Snake gourd v1

Overview
NameTan0001551
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG10: 24485334 .. 24485837 (+)
RNA-Seq ExpressionTan0001551
SyntenyTan0001551
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCTCAACGATTGGGAACTCCTCGATTGCCATGAAGATGGCGAGAAAAAACTCAGCTCTGCCAAACTCGGTGTCGATCAGAAGATGGCTTTCGAGTTAAACGATACTGATCGATCTATTTCCGTTTCAGATCAACAAAACACGATCACTGGCAGAGCGGCTTGCGATATACAACAAATCAGTGTGCAAGATGATGAAGACATCGTTTCACAAGTTTCCGGCCAGAAACTGATCGGCGACATGAAAAAGGACTCCGCTAGGTTTTGTACCGGCGCAGAATCAGATGTGCACGATGACGCAGAAGTCAAGGAGGAGGGCGTAAATTCAAGAAGAATGAAAATGGCGATGGAGAAGAGACAAAAATGGGGGAGAGCGGCCATTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGCACGGTGTTATTGGGAAGCCATAGCCACCAGCAAGGGGGAGCCAATAAGCAGCATCAGAAGAACCAAATCTGCCCTTGTGAATAA

mRNA sequence

ATGGTCCTCAACGATTGGGAACTCCTCGATTGCCATGAAGATGGCGAGAAAAAACTCAGCTCTGCCAAACTCGGTGTCGATCAGAAGATGGCTTTCGAGTTAAACGATACTGATCGATCTATTTCCGTTTCAGATCAACAAAACACGATCACTGGCAGAGCGGCTTGCGATATACAACAAATCAGTGTGCAAGATGATGAAGACATCGTTTCACAAGTTTCCGGCCAGAAACTGATCGGCGACATGAAAAAGGACTCCGCTAGGTTTTGTACCGGCGCAGAATCAGATGTGCACGATGACGCAGAAGTCAAGGAGGAGGGCGTAAATTCAAGAAGAATGAAAATGGCGATGGAGAAGAGACAAAAATGGGGGAGAGCGGCCATTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGCACGGTGTTATTGGGAAGCCATAGCCACCAGCAAGGGGGAGCCAATAAGCAGCATCAGAAGAACCAAATCTGCCCTTGTGAATAA

Coding sequence (CDS)

ATGGTCCTCAACGATTGGGAACTCCTCGATTGCCATGAAGATGGCGAGAAAAAACTCAGCTCTGCCAAACTCGGTGTCGATCAGAAGATGGCTTTCGAGTTAAACGATACTGATCGATCTATTTCCGTTTCAGATCAACAAAACACGATCACTGGCAGAGCGGCTTGCGATATACAACAAATCAGTGTGCAAGATGATGAAGACATCGTTTCACAAGTTTCCGGCCAGAAACTGATCGGCGACATGAAAAAGGACTCCGCTAGGTTTTGTACCGGCGCAGAATCAGATGTGCACGATGACGCAGAAGTCAAGGAGGAGGGCGTAAATTCAAGAAGAATGAAAATGGCGATGGAGAAGAGACAAAAATGGGGGAGAGCGGCCATTTGTTCGTTTGGAATTGCTGTGGCGGCTACAATTTGCACGGTGTTATTGGGAAGCCATAGCCACCAGCAAGGGGGAGCCAATAAGCAGCATCAGAAGAACCAAATCTGCCCTTGTGAATAA

Protein sequence

MVLNDWELLDCHEDGEKKLSSAKLGVDQKMAFELNDTDRSISVSDQQNTITGRAACDIQQISVQDDEDIVSQVSGQKLIGDMKKDSARFCTGAESDVHDDAEVKEEGVNSRRMKMAMEKRQKWGRAAICSFGIAVAATICTVLLGSHSHQQGGANKQHQKNQICPCE
Homology
[Close]
BLAST of Tan0001551 vs. NCBI nr
Match: KGN59752.1 (hypothetical protein Csa_001232 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-16
Identity = 65/161 (40.37%), Postives = 82/161 (50.93%), Query Frame = 0 

Query: 1   MVLNDWELLDCHEDGEKKLSSAKLGVDQKMAFELNDTDRSISVSDQQNTITGRAACDIQQ 60
           M L+DWELLDCHED +++ S                                        
Sbjct: 1   MGLDDWELLDCHEDHDQEKS---------------------------------------- 60

Query: 61  ISVQDDEDIVSQVSGQKLIGDMKKDSARFCTGAESDVHDDAEVKEEGVNSRRMKMAMEKR 120
              +  E++V  +SGQKLIGD K +       AE DV ++ +V   G     M MAMEKR
Sbjct: 61  ---RPHENVV--ISGQKLIGDTKNEMEAV---AEFDVEEEEKVDSRG----GMDMAMEKR 109

Query: 121 QKWGRAAICSFGIAVAATICTVLLGSHSHQQGG---ANKQH 159
           ++WGR  +CSFGIAVAATIC+VLLGSHSH  GG    NK+H
Sbjct: 121 KQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRH 109

[Close]
BLAST of Tan0001551 vs. NCBI nr
Match: KAA0057194.1 (hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK18767.1 hypothetical protein E5676_scaffold257G00740 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 4.3e-14
Identity = 67/163 (41.10%), Postives = 82/163 (50.31%), Query Frame = 0 

Query: 1   MVLNDWELLDCHEDGEKKLSSAKLGVDQKMAFELNDTDRSISVSDQQNTITGRAACDIQQ 60
           M L+DWELLDCHED E+K                         S  +N +          
Sbjct: 1   MGLDDWELLDCHEDREEK-------------------------SRHENEV---------- 60

Query: 61  ISVQDDEDIVSQVSGQKLIGDMKKDSARFCTGAESDVHDDAEV-KEEGVNSRR-MKMAME 120
                       +SGQKLI D KK         E ++  + EV +EE  NSRR M MA E
Sbjct: 61  ------------ISGQKLIADTKK---------ELEIVAEFEVEEEEKENSRRGMDMATE 107

Query: 121 KRQKWGRAAICSFGIAVAATICTVLLGSHSHQQGG---ANKQH 159
           K+++ GRA +CSFGIAVAATIC+VLLGSHSH  GG    NK+H
Sbjct: 121 KKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRH 107

[Close]
BLAST of Tan0001551 vs. ExPASy TrEMBL
Match: A0A0A0LG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-16
Identity = 65/161 (40.37%), Postives = 82/161 (50.93%), Query Frame = 0 

Query: 1   MVLNDWELLDCHEDGEKKLSSAKLGVDQKMAFELNDTDRSISVSDQQNTITGRAACDIQQ 60
           M L+DWELLDCHED +++ S                                        
Sbjct: 1   MGLDDWELLDCHEDHDQEKS---------------------------------------- 60

Query: 61  ISVQDDEDIVSQVSGQKLIGDMKKDSARFCTGAESDVHDDAEVKEEGVNSRRMKMAMEKR 120
              +  E++V  +SGQKLIGD K +       AE DV ++ +V   G     M MAMEKR
Sbjct: 61  ---RPHENVV--ISGQKLIGDTKNEMEAV---AEFDVEEEEKVDSRG----GMDMAMEKR 109

Query: 121 QKWGRAAICSFGIAVAATICTVLLGSHSHQQGG---ANKQH 159
           ++WGR  +CSFGIAVAATIC+VLLGSHSH  GG    NK+H
Sbjct: 121 KQWGRTVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRH 109

[Close]
BLAST of Tan0001551 vs. ExPASy TrEMBL
Match: A0A5D3D5E0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00740 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.1e-14
Identity = 67/163 (41.10%), Postives = 82/163 (50.31%), Query Frame = 0 

Query: 1   MVLNDWELLDCHEDGEKKLSSAKLGVDQKMAFELNDTDRSISVSDQQNTITGRAACDIQQ 60
           M L+DWELLDCHED E+K                         S  +N +          
Sbjct: 1   MGLDDWELLDCHEDREEK-------------------------SRHENEV---------- 60

Query: 61  ISVQDDEDIVSQVSGQKLIGDMKKDSARFCTGAESDVHDDAEV-KEEGVNSRR-MKMAME 120
                       +SGQKLI D KK         E ++  + EV +EE  NSRR M MA E
Sbjct: 61  ------------ISGQKLIADTKK---------ELEIVAEFEVEEEEKENSRRGMDMATE 107

Query: 121 KRQKWGRAAICSFGIAVAATICTVLLGSHSHQQGG---ANKQH 159
           K+++ GRA +CSFGIAVAATIC+VLLGSHSH  GG    NK+H
Sbjct: 121 KKKQRGRAVVCSFGIAVAATICSVLLGSHSHHHGGGAFVNKRH 107

The following BLAST results are available for this feature:
BLAST of Tan0001551 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0001551 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59752.12.7e-1640.37hypothetical protein Csa_001232 [Cucumis sativus][more]
KAA0057194.14.3e-1441.10hypothetical protein E6C27_scaffold280G00230 [Cucumis melo var. makuwa] >TYK1876... [more]
BLAST of Tan0001551 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG951.3e-1640.37Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842740 PE=4 SV=1[more]
A0A5D3D5E02.1e-1441.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Tan0001551 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001551.1Tan0001551.1mRNA