Tan0001538 (gene) Snake gourd v1

Overview


Name	Tan0001538
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L9-like
Location	LG07: 7699234 .. 7701399 (-)
RNA-Seq Expression	Tan0001538
Synteny	Tan0001538

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCACTATAAATCTCCACCATTTCCCTGATTAGGGTTTTTATTCATTCTCAGCCGTCGCCGTCGCCGTCGCCGTTCCAGCTCCAGAGAGAGAGTCAGAGAGTTGCATTAGGAAAAGATGAAGACGATCCTCTCATCGGAAACTATGGACATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATCGAGGTCGAAGGCCCTCGGGGGAAACTCACTCGCAACTTCAAGCATCTGAATCTTGATTTCCAGTTGATCACCGAAGAGGGTACCGGAAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGCTCCAGGAAGACTTCTGCTGCCATTCGTACTGCCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCTATCAATGCTAGCATCACCAACGGCAACAAGGCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTATAACTCTCTCCCTCACTTTATTCTCATAATTTGCACTATTTGGATTATGGATTTGTATTTGCTGCCGCGTTTGCATTTTTTACCCTAATTGAATGTTGAATAATCGAGTCTTAAGTGTTAGTCAGGATTGGTTGACTACTCTTTTAAACTAATTCATGAATGATGCCCTAGCCCTTTGCAATATTGTTCTTTTTCATCCTTCTTCCGTAATTATTTTGGCCCTAGCCCTTTGAAGAGCATATGTTTGAAAACAGAACAGTTTTTATTTATTTTTACATTATCTTTATTTGATTTGATTCTCCGCCAGGGCTATGGTTTAATTTCAGTAACTCCTCAATTAGTAAAATTATCTCTTTAGTGGAATCTATTATTGGGGCATTTTGTGGTTTTGAAATGTTATGGAAAACAAAGAATACAAACGATAAGGTTCAGTTGATTGTAACGAAAATTTACAAGGAAAGACTGTGTTCGGTAAAACAGTTTGTGGGGATTGGGAAGTTGAGTTAGATGTCAAATACAGTAGAAGGAGATGCAGAGAGGGAAGGAGGTCAGATGGATGGGGATGAAGATGTATCTCTTTTTTTTGTTGTTGTGTGCGCGTTTGTTTTGCGTGTGGTTAAAAACTACTTTAAAAAGCAAGTCTGCGAGTGCATTGAAAAGAAATAGGTTACATTGACTACAGTCCTTTGAGTATTTCAGCCAAAGTACAAGTATCATAAAATTTAAACAAGTATCGAAACGGAGCTATTATGTACTCCCAAACAATTATTTGAAACCCCCCTCCTCCTCTTTTGTATGAAGTATTGAAACTATTGTTCTTTTCTATTGGTATGATGCTTGGATGTGATGTCTCTGTCTTTTCTGTGCAATAGGTGCGAAAGGTAGATATGCTTGATGGAGTATCTATTCTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATTGAGCTCGTATCTCGGTCTGCTGCCTTGATAAACCAGGTCTCTCTTCCATGCTACTTTGTGATTGATTCTTGCTTGCAAAACTTCGCCTGCACAGGCATAATCAGTTTTATACTCACTTTTTTCTTTTCTTCTGGGTGACAGAAATGCCATGTCAAGAACAAAGATATCAGGAAGTTCCTTGATGGTATTTATGTCAGCGAAAAGGGAACTGTTCTTGACGAGGAGTGAAGATCATGAGTAGTTTTGTTCAACCATGCTTTGGCTTTGGGTGATTGTTTCTTCTTATATATTTATATTTCATTCGTAGACAAATTCGTGAAAGCTGGGTTTTGAAAGGAAAAAAAAACTTATCGTAGACAAATTCTCGAGCTTTTTGGACACTTGTAATGGCTGATGGATGGAGTAAATGCCAGTTTTCATTGTTTGGTTTGTTTTGAGAGTTTCTATTTCCAAAAGACTTAATTTTGTTCCTATCTGTAGGGTTGAGAATGTTGTCCATTTTTCAATTTATAGTTAAATTAGTAGTATGGTGAAGCAATTGTTGATTGTGGATGCAGTTCTTGTTCCTCTGGGCCCTAAAATTTTGCTCTTATAATATTAACATCAACTTACATCGATGGTAAGCTATGATTGAAGACTGCAGAACTGCCCTCATAACTTTTGGTTTTTATCAAGTTCTCTTTTTATCATCTTTTAGGTTGTTACTGTCCAC

mRNA sequence

TCCCACTATAAATCTCCACCATTTCCCTGATTAGGGTTTTTATTCATTCTCAGCCGTCGCCGTCGCCGTCGCCGTTCCAGCTCCAGAGAGAGAGTCAGAGAGTTGCATTAGGAAAAGATGAAGACGATCCTCTCATCGGAAACTATGGACATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATCGAGGTCGAAGGCCCTCGGGGGAAACTCACTCGCAACTTCAAGCATCTGAATCTTGATTTCCAGTTGATCACCGAAGAGGGTACCGGAAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGCTCCAGGAAGACTTCTGCTGCCATTCGTACTGCCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCTATCAATGCTAGCATCACCAACGGCAACAAGGCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTGCGAAAGGTAGATATGCTTGATGGAGTATCTATTCTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATTGAGCTCGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATGTCAAGAACAAAGATATCAGGAAGTTCCTTGATGGTATTTATGTCAGCGAAAAGGGAACTGTTCTTGACGAGGAGTGAAGATCATGAGTAGTTTTGTTCAACCATGCTTTGGCTTTGGGTGATTGTTTCTTCTTATATATTTATATTTCATTCGTAGACAAATTCGTGAAAGCTGGGTTTTGAAAGGAAAAAAAAACTTATCGTAGACAAATTCTCGAGCTTTTTGGACACTTGTAATGGCTGATGGATGGAGTAAATGCCAGTTTTCATTGTTTGGTTTGTTTTGAGAGTTTCTATTTCCAAAAGACTTAATTTTGTTCCTATCTGTAGGGTTGAGAATGTTGTCCATTTTTCAATTTATAGTTAAATTAGTAGTATGGTGAAGCAATTGTTGATTGTGGATGCAGTTCTTGTTCCTCTGGGCCCTAAAATTTTGCTCTTATAATATTAACATCAACTTACATCGATGGTAAGCTATGATTGAAGACTGCAGAACTGCCCTCATAACTTTTGGTTTTTATCAAGTTCTCTTTTTATCATCTTTTAGGTTGTTACTGTCCAC

Coding sequence (CDS)

ATGAAGACGATCCTCTCATCGGAAACTATGGACATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATCGAGGTCGAAGGCCCTCGGGGGAAACTCACTCGCAACTTCAAGCATCTGAATCTTGATTTCCAGTTGATCACCGAAGAGGGTACCGGAAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGCTCCAGGAAGACTTCTGCTGCCATTCGTACTGCCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCTATCAATGCTAGCATCACCAACGGCAACAAGGCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTGCGAAAGGTAGATATGCTTGATGGAGTATCTATTCTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATTGAGCTCGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATGTCAAGAACAAAGATATCAGGAAGTTCCTTGATGGTATTTATGTCAGCGAAAAGGGAACTGTTCTTGACGAGGAGTGA

Protein sequence

MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNFLGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTVLDEE

Homology

[Close]

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-91
Identity = 172/194 (88.66%), Postives = 183/194 (94.33%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETM+IP+GV IKVNAK+IEVEGPRGKL R+FKHLNLDF LIT+E  GKKKLKI
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKG V+ EE
Sbjct: 181 GIYVSEKGAVVVEE 193

[Close]

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.1e-88
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKLTR+FKHLNLDFQLI ++ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NK+IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 324.3 bits (830), Expect = 9.2e-88
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI +  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEK  +++EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 323.9 bits (829), Expect = 1.2e-87
Identity = 160/193 (82.90%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTIL+SETM+IPEGV ++V AK++ VEGPRGKLTRNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN N AIEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+ILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDE 194
           GIYVS+KGT+ ++
Sbjct: 181 GIYVSDKGTITED 189

[Close]

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.9e-59
Identity = 115/194 (59.28%), Postives = 144/194 (74.23%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILS++T+DIP+ V + +  + + V+GPRG L R F H+NL+ +L+   G  +KKL++
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLL---GKKQKKLRV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++ E
Sbjct: 181 GIYVSEKGTVVEPE 191

[Close]

BLAST of Tan0001538 vs. NCBI nr
Match: XP_022996012.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 188/194 (96.91%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTVL+EE
Sbjct: 181 GIYVSEKGTVLEEE 194

[Close]

BLAST of Tan0001538 vs. NCBI nr
Match: XP_022159699.1 (60S ribosomal protein L9-like [Momordica charantia])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 187/194 (96.39%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Tan0001538 vs. NCBI nr
Match: XP_022958609.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_023532091.1 60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo] >KAG6605746.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035650.1 60S ribosomal protein L9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.6 bits (945), Expect = 3.3e-98
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV +EE
Sbjct: 181 GIYVSEKGTVFEEE 194

[Close]

BLAST of Tan0001538 vs. NCBI nr
Match: XP_023551562.1 (60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Tan0001538 vs. NCBI nr
Match: XP_004145906.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_000354 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 9.5e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A6J1K0L1 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111491349 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 188/194 (96.91%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTVL+EE
Sbjct: 181 GIYVSEKGTVLEEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A6J1E338 (60S ribosomal protein L9-like OS=Momordica charantia OX=3673 GN=LOC111026041 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 187/194 (96.39%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A6J1H5L1 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111459785 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV +EE
Sbjct: 181 GIYVSEKGTVFEEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A5D3C437 (60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00890 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.6e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: E5GBD5 (60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.6e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

[Close]

BLAST of Tan0001538 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 325.5 bits (833), Expect = 2.9e-89
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKLTR+FKHLNLDFQLI ++ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NK+IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

[Close]

BLAST of Tan0001538 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 324.3 bits (830), Expect = 6.6e-89
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI +  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEK  +++EE
Sbjct: 181 GIYVSEKSKIVEEE 194

[Close]

BLAST of Tan0001538 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 324.3 bits (830), Expect = 6.6e-89
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0


Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI +  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEK  +++EE
Sbjct: 181 GIYVSEKSKIVEEE 194

The following BLAST results are available for this feature:

BLAST of Tan0001538 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P30707	1.1e-91	88.66	60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1	[more]
Q9SZX9	4.1e-88	82.47	60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1	[more]
P49209	9.2e-88	82.47	60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3	[more]
P49210	1.2e-87	82.90	60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S...	[more]
Q90YW0	6.9e-59	59.28	60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1	[more]

BLAST of Tan0001538 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022996012.1	1.1e-98	96.91	60S ribosomal protein L9-like [Cucurbita maxima]	[more]
XP_022159699.1	1.1e-98	96.39	60S ribosomal protein L9-like [Momordica charantia]	[more]
XP_022958609.1	3.3e-98	96.39	60S ribosomal protein L9-like [Cucurbita moschata] >XP_023532091.1 60S ribosomal...	[more]
XP_023551562.1	5.6e-98	96.39	60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo]	[more]
XP_004145906.1	9.5e-98	95.36	60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_...	[more]

BLAST of Tan0001538 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0L1	5.4e-99	96.91	60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111491349 PE=3 S...	[more]
A0A6J1E338	5.4e-99	96.39	60S ribosomal protein L9-like OS=Momordica charantia OX=3673 GN=LOC111026041 PE=...	[more]
A0A6J1H5L1	1.6e-98	96.39	60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111459785 PE=3...	[more]
A0A5D3C437	4.6e-98	95.36	60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
E5GBD5	4.6e-98	95.36	60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Tan0001538 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10450.1	2.9e-89	82.47	Ribosomal protein L6 family	[more]
AT1G33120.1	6.6e-89	82.47	Ribosomal protein L6 family	[more]
AT1G33140.1	6.6e-89	82.47	Ribosomal protein L6 family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 1..90 e-value: 1.8E-30 score: 107.2
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 91..194 e-value: 2.1E-51 score: 174.3
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 1..90
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 91..187
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 1..190 e-value: 9.3E-32 score: 107.9
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 1..194
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 103..181 e-value: 1.7E-11 score: 44.6 coord: 12..90 e-value: 2.0E-12 score: 47.6
None	No IPR available	PANTHER	PTHR11655:SF40	60S RIBOSOMAL PROTEIN L9-LIKE	coord: 1..194
IPR002359	Ribosomal protein L6, conserved site-2	PROSITE	PS00700	RIBOSOMAL_L6_2	coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001538.1	Tan0001538.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome