Tan0001538 (gene) Snake gourd v1

Overview
NameTan0001538
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Description60S ribosomal protein L9-like
LocationLG07: 7699234 .. 7701399 (-)
RNA-Seq ExpressionTan0001538
SyntenyTan0001538
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCACTATAAATCTCCACCATTTCCCTGATTAGGGTTTTTATTCATTCTCAGCCGTCGCCGTCGCCGTCGCCGTTCCAGCTCCAGAGAGAGAGTCAGAGAGTTGCATTAGGAAAAGATGAAGACGATCCTCTCATCGGAAACTATGGACATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATCGAGGTCGAAGGCCCTCGGGGGAAACTCACTCGCAACTTCAAGCATCTGAATCTTGATTTCCAGTTGATCACCGAAGAGGGTACCGGAAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGCTCCAGGAAGACTTCTGCTGCCATTCGTACTGCCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCTATCAATGCTAGCATCACCAACGGCAACAAGGCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTATAACTCTCTCCCTCACTTTATTCTCATAATTTGCACTATTTGGATTATGGATTTGTATTTGCTGCCGCGTTTGCATTTTTTACCCTAATTGAATGTTGAATAATCGAGTCTTAAGTGTTAGTCAGGATTGGTTGACTACTCTTTTAAACTAATTCATGAATGATGCCCTAGCCCTTTGCAATATTGTTCTTTTTCATCCTTCTTCCGTAATTATTTTGGCCCTAGCCCTTTGAAGAGCATATGTTTGAAAACAGAACAGTTTTTATTTATTTTTACATTATCTTTATTTGATTTGATTCTCCGCCAGGGCTATGGTTTAATTTCAGTAACTCCTCAATTAGTAAAATTATCTCTTTAGTGGAATCTATTATTGGGGCATTTTGTGGTTTTGAAATGTTATGGAAAACAAAGAATACAAACGATAAGGTTCAGTTGATTGTAACGAAAATTTACAAGGAAAGACTGTGTTCGGTAAAACAGTTTGTGGGGATTGGGAAGTTGAGTTAGATGTCAAATACAGTAGAAGGAGATGCAGAGAGGGAAGGAGGTCAGATGGATGGGGATGAAGATGTATCTCTTTTTTTTGTTGTTGTGTGCGCGTTTGTTTTGCGTGTGGTTAAAAACTACTTTAAAAAGCAAGTCTGCGAGTGCATTGAAAAGAAATAGGTTACATTGACTACAGTCCTTTGAGTATTTCAGCCAAAGTACAAGTATCATAAAATTTAAACAAGTATCGAAACGGAGCTATTATGTACTCCCAAACAATTATTTGAAACCCCCCTCCTCCTCTTTTGTATGAAGTATTGAAACTATTGTTCTTTTCTATTGGTATGATGCTTGGATGTGATGTCTCTGTCTTTTCTGTGCAATAGGTGCGAAAGGTAGATATGCTTGATGGAGTATCTATTCTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATTGAGCTCGTATCTCGGTCTGCTGCCTTGATAAACCAGGTCTCTCTTCCATGCTACTTTGTGATTGATTCTTGCTTGCAAAACTTCGCCTGCACAGGCATAATCAGTTTTATACTCACTTTTTTCTTTTCTTCTGGGTGACAGAAATGCCATGTCAAGAACAAAGATATCAGGAAGTTCCTTGATGGTATTTATGTCAGCGAAAAGGGAACTGTTCTTGACGAGGAGTGAAGATCATGAGTAGTTTTGTTCAACCATGCTTTGGCTTTGGGTGATTGTTTCTTCTTATATATTTATATTTCATTCGTAGACAAATTCGTGAAAGCTGGGTTTTGAAAGGAAAAAAAAACTTATCGTAGACAAATTCTCGAGCTTTTTGGACACTTGTAATGGCTGATGGATGGAGTAAATGCCAGTTTTCATTGTTTGGTTTGTTTTGAGAGTTTCTATTTCCAAAAGACTTAATTTTGTTCCTATCTGTAGGGTTGAGAATGTTGTCCATTTTTCAATTTATAGTTAAATTAGTAGTATGGTGAAGCAATTGTTGATTGTGGATGCAGTTCTTGTTCCTCTGGGCCCTAAAATTTTGCTCTTATAATATTAACATCAACTTACATCGATGGTAAGCTATGATTGAAGACTGCAGAACTGCCCTCATAACTTTTGGTTTTTATCAAGTTCTCTTTTTATCATCTTTTAGGTTGTTACTGTCCAC

mRNA sequence

TCCCACTATAAATCTCCACCATTTCCCTGATTAGGGTTTTTATTCATTCTCAGCCGTCGCCGTCGCCGTCGCCGTTCCAGCTCCAGAGAGAGAGTCAGAGAGTTGCATTAGGAAAAGATGAAGACGATCCTCTCATCGGAAACTATGGACATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATCGAGGTCGAAGGCCCTCGGGGGAAACTCACTCGCAACTTCAAGCATCTGAATCTTGATTTCCAGTTGATCACCGAAGAGGGTACCGGAAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGCTCCAGGAAGACTTCTGCTGCCATTCGTACTGCCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCTATCAATGCTAGCATCACCAACGGCAACAAGGCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTGCGAAAGGTAGATATGCTTGATGGAGTATCTATTCTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATTGAGCTCGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATGTCAAGAACAAAGATATCAGGAAGTTCCTTGATGGTATTTATGTCAGCGAAAAGGGAACTGTTCTTGACGAGGAGTGAAGATCATGAGTAGTTTTGTTCAACCATGCTTTGGCTTTGGGTGATTGTTTCTTCTTATATATTTATATTTCATTCGTAGACAAATTCGTGAAAGCTGGGTTTTGAAAGGAAAAAAAAACTTATCGTAGACAAATTCTCGAGCTTTTTGGACACTTGTAATGGCTGATGGATGGAGTAAATGCCAGTTTTCATTGTTTGGTTTGTTTTGAGAGTTTCTATTTCCAAAAGACTTAATTTTGTTCCTATCTGTAGGGTTGAGAATGTTGTCCATTTTTCAATTTATAGTTAAATTAGTAGTATGGTGAAGCAATTGTTGATTGTGGATGCAGTTCTTGTTCCTCTGGGCCCTAAAATTTTGCTCTTATAATATTAACATCAACTTACATCGATGGTAAGCTATGATTGAAGACTGCAGAACTGCCCTCATAACTTTTGGTTTTTATCAAGTTCTCTTTTTATCATCTTTTAGGTTGTTACTGTCCAC

Coding sequence (CDS)

ATGAAGACGATCCTCTCATCGGAAACTATGGACATCCCCGAGGGGGTGAAGATCAAAGTGAACGCCAAAATCATCGAGGTCGAAGGCCCTCGGGGGAAACTCACTCGCAACTTCAAGCATCTGAATCTTGATTTCCAGTTGATCACCGAAGAGGGTACCGGAAAGAAGAAGCTCAAGATCGATGCCTGGTTCGGCTCCAGGAAGACTTCTGCTGCCATTCGTACTGCCCTTAGCCATGTTGAGAATCTCATCACTGGTGTCACCAAGGGCTACCGTTACAAGATGCGATTTGTTTATGCTCACTTTCCTATCAATGCTAGCATCACCAACGGCAACAAGGCTATCGAGATCCGTAACTTTCTTGGTGAGAAAAAGGTGCGAAAGGTAGATATGCTTGATGGAGTATCTATTCTTCGATCTGAGAAGGTCAAAGATGAGTTAGTCTTGGATGGTAATGATATTGAGCTCGTATCTCGGTCTGCTGCCTTGATAAACCAGAAATGCCATGTCAAGAACAAAGATATCAGGAAGTTCCTTGATGGTATTTATGTCAGCGAAAAGGGAACTGTTCTTGACGAGGAGTGA

Protein sequence

MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNFLGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGTVLDEE
Homology
BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: P30707 (60S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-91
Identity = 172/194 (88.66%), Postives = 183/194 (94.33%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETM+IP+GV IKVNAK+IEVEGPRGKL R+FKHLNLDF LIT+E  GKKKLKI
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDE-NGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKG+RYKMRFVYA FPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVD+LDGVSI+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKG V+ EE
Sbjct: 181 GIYVSEKGAVVVEE 193

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: Q9SZX9 (60S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 4.1e-88
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKLTR+FKHLNLDFQLI ++ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NK+IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: P49209 (60S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3)

HSP 1 Score: 324.3 bits (830), Expect = 9.2e-88
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI +  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEK  +++EE
Sbjct: 181 GIYVSEKSKIVEEE 194

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: P49210 (60S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 SV=3)

HSP 1 Score: 323.9 bits (829), Expect = 1.2e-87
Identity = 160/193 (82.90%), Postives = 180/193 (93.26%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTIL+SETM+IPEGV ++V AK++ VEGPRGKLTRNFKHLNLDFQL+     G +KL++
Sbjct: 1   MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLL----EGGRKLQV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFG+R+T AAIRTA+SHV+NLITGVTKGYRYKMRFVYAHFPINASITN N AIEIRNF
Sbjct: 61  DAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDML+GV+ILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDE 194
           GIYVS+KGT+ ++
Sbjct: 181 GIYVSDKGTITED 189

BLAST of Tan0001538 vs. ExPASy Swiss-Prot
Match: Q90YW0 (60S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.9e-59
Identity = 115/194 (59.28%), Postives = 144/194 (74.23%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILS++T+DIP+ V + +  + + V+GPRG L R F H+NL+ +L+   G  +KKL++
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLL---GKKQKKLRV 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D W+G+RK  A +RT  SHV+N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF
Sbjct: 61  DKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEK +R+V M  GV+   S   KDELVL+GNDIELVS SAALI Q   VKNKDIRKFLD
Sbjct: 121 LGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++ E
Sbjct: 181 GIYVSEKGTVVEPE 191

BLAST of Tan0001538 vs. NCBI nr
Match: XP_022996012.1 (60S ribosomal protein L9-like [Cucurbita maxima])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 188/194 (96.91%), Postives = 192/194 (98.97%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTVL+EE
Sbjct: 181 GIYVSEKGTVLEEE 194

BLAST of Tan0001538 vs. NCBI nr
Match: XP_022159699.1 (60S ribosomal protein L9-like [Momordica charantia])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 187/194 (96.39%), Postives = 192/194 (98.97%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

BLAST of Tan0001538 vs. NCBI nr
Match: XP_022958609.1 (60S ribosomal protein L9-like [Cucurbita moschata] >XP_023532091.1 60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo] >KAG6605746.1 60S ribosomal protein L9, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035650.1 60S ribosomal protein L9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 368.6 bits (945), Expect = 3.3e-98
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV +EE
Sbjct: 181 GIYVSEKGTVFEEE 194

BLAST of Tan0001538 vs. NCBI nr
Match: XP_023551562.1 (60S ribosomal protein L9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 367.9 bits (943), Expect = 5.6e-98
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

BLAST of Tan0001538 vs. NCBI nr
Match: XP_004145906.1 (60S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_000354 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 9.5e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEATGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNTNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIIRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A6J1K0L1 (60S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111491349 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 188/194 (96.91%), Postives = 192/194 (98.97%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTVL+EE
Sbjct: 181 GIYVSEKGTVLEEE 194

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A6J1E338 (60S ribosomal protein L9-like OS=Momordica charantia OX=3673 GN=LOC111026041 PE=3 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.4e-99
Identity = 187/194 (96.39%), Postives = 192/194 (98.97%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEESTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNANKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A6J1H5L1 (60S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111459785 PE=3 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 187/194 (96.39%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLITEE TGKKKLKI
Sbjct: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLIRNFKHLNLDFQLITEEETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASIT+GNK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITSGNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV +EE
Sbjct: 181 GIYVSEKGTVFEEE 194

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: A0A5D3C437 (60S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00890 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.6e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

BLAST of Tan0001538 vs. ExPASy TrEMBL
Match: E5GBD5 (60S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 4.6e-98
Identity = 185/194 (95.36%), Postives = 191/194 (98.45%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GVKIKVNAKIIEVEGPRGKL RNFKHLNLDFQLIT+E TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDGVKIKVNAKIIEVEGPRGKLVRNFKHLNLDFQLITDEDTGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITN NK+IEIRNF
Sbjct: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNSNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKVDMLDGVSI+RSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD
Sbjct: 121 LGEKKVRKVDMLDGVSIVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKGTV++EE
Sbjct: 181 GIYVSEKGTVVEEE 194

BLAST of Tan0001538 vs. TAIR 10
Match: AT4G10450.1 (Ribosomal protein L6 family )

HSP 1 Score: 325.5 bits (833), Expect = 2.9e-89
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+GV IKVNAK+IEVEGPRGKLTR+FKHLNLDFQLI ++ TGK++LKI
Sbjct: 1   MKTILSSETMDIPDGVAIKVNAKVIEVEGPRGKLTRDFKHLNLDFQLIKDQVTGKRQLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFGSRKTSA+IRTALSHV+NLI GVT+G+ Y+MRFVYAHFPINASI   NK+IEIRNF
Sbjct: 61  DSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV I+RSEKVKDE++L+GNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEKG +  EE
Sbjct: 181 GIYVSEKGKIAVEE 194

BLAST of Tan0001538 vs. TAIR 10
Match: AT1G33120.1 (Ribosomal protein L6 family )

HSP 1 Score: 324.3 bits (830), Expect = 6.6e-89
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI +  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEK  +++EE
Sbjct: 181 GIYVSEKSKIVEEE 194

BLAST of Tan0001538 vs. TAIR 10
Match: AT1G33140.1 (Ribosomal protein L6 family )

HSP 1 Score: 324.3 bits (830), Expect = 6.6e-89
Identity = 160/194 (82.47%), Postives = 180/194 (92.78%), Query Frame = 0

Query: 1   MKTILSSETMDIPEGVKIKVNAKIIEVEGPRGKLTRNFKHLNLDFQLITEEGTGKKKLKI 60
           MKTILSSETMDIP+ V IKV+AK+IEVEGPRGKL R+FKHLNLDFQLI +  TGKKKLKI
Sbjct: 1   MKTILSSETMDIPDSVTIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDPETGKKKLKI 60

Query: 61  DAWFGSRKTSAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGNKAIEIRNF 120
           D+WFG+RKTSA+IRTALSHV+NLI+GVT+G+RYKMRFVYAHFPINASI    K+IEIRNF
Sbjct: 61  DSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRNF 120

Query: 121 LGEKKVRKVDMLDGVSILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLD 180
           LGEKKVRKV+MLDGV+I+RSEKVKDE+VLDGNDIELVSRS ALINQKCHVK KDIRKFLD
Sbjct: 121 LGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDIRKFLD 180

Query: 181 GIYVSEKGTVLDEE 195
           GIYVSEK  +++EE
Sbjct: 181 GIYVSEKSKIVEEE 194

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P307071.1e-9188.6660S ribosomal protein L9 OS=Pisum sativum OX=3888 GN=RPL9 PE=2 SV=1[more]
Q9SZX94.1e-8882.4760S ribosomal protein L9-2 OS=Arabidopsis thaliana OX=3702 GN=RPL9D PE=2 SV=1[more]
P492099.2e-8882.4760S ribosomal protein L9-1 OS=Arabidopsis thaliana OX=3702 GN=RPL9B PE=1 SV=3[more]
P492101.2e-8782.9060S ribosomal protein L9 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL9 PE=2 S... [more]
Q90YW06.9e-5959.2860S ribosomal protein L9 OS=Ictalurus punctatus OX=7998 GN=rpl9 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
XP_022996012.11.1e-9896.9160S ribosomal protein L9-like [Cucurbita maxima][more]
XP_022159699.11.1e-9896.3960S ribosomal protein L9-like [Momordica charantia][more]
XP_022958609.13.3e-9896.3960S ribosomal protein L9-like [Cucurbita moschata] >XP_023532091.1 60S ribosomal... [more]
XP_023551562.15.6e-9896.3960S ribosomal protein L9-like [Cucurbita pepo subsp. pepo][more]
XP_004145906.19.5e-9895.3660S ribosomal protein L9 [Cucumis sativus] >KGN49915.1 hypothetical protein Csa_... [more]
Match NameE-valueIdentityDescription
A0A6J1K0L15.4e-9996.9160S ribosomal protein L9-like OS=Cucurbita maxima OX=3661 GN=LOC111491349 PE=3 S... [more]
A0A6J1E3385.4e-9996.3960S ribosomal protein L9-like OS=Momordica charantia OX=3673 GN=LOC111026041 PE=... [more]
A0A6J1H5L11.6e-9896.3960S ribosomal protein L9-like OS=Cucurbita moschata OX=3662 GN=LOC111459785 PE=3... [more]
A0A5D3C4374.6e-9895.3660S ribosomal protein L9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
E5GBD54.6e-9895.3660S ribosomal protein l9 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G10450.12.9e-8982.47Ribosomal protein L6 family [more]
AT1G33120.16.6e-8982.47Ribosomal protein L6 family [more]
AT1G33140.16.6e-8982.47Ribosomal protein L6 family [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 1..90
e-value: 1.8E-30
score: 107.2
IPR036789Ribosomal protein L6, alpha-beta domain superfamilyGENE3D3.90.930.12coord: 91..194
e-value: 2.1E-51
score: 174.3
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 1..90
IPR036789Ribosomal protein L6, alpha-beta domain superfamilySUPERFAMILY56053Ribosomal protein L6coord: 91..187
IPR000702Ribosomal protein L6PIRSFPIRSF002162RPL6p_RPL6a_RPL9e_RPL9ocoord: 1..190
e-value: 9.3E-32
score: 107.9
IPR000702Ribosomal protein L6PANTHERPTHR1165560S/50S RIBOSOMAL PROTEIN L6/L9coord: 1..194
IPR020040Ribosomal protein L6, alpha-beta domainPFAMPF00347Ribosomal_L6coord: 103..181
e-value: 1.7E-11
score: 44.6
coord: 12..90
e-value: 2.0E-12
score: 47.6
NoneNo IPR availablePANTHERPTHR11655:SF4060S RIBOSOMAL PROTEIN L9-LIKEcoord: 1..194
IPR002359Ribosomal protein L6, conserved site-2PROSITEPS00700RIBOSOMAL_L6_2coord: 166..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001538.1Tan0001538.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002181 cytoplasmic translation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome