Tan0001488 (gene) Snake gourd v1

Overview


Name	Tan0001488
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	LOB domain-containing protein
Location	LG04: 2119646 .. 2120990 (-)
RNA-Seq Expression	Tan0001488
Synteny	Tan0001488

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCATCTTCTTGTGGTGCCTGCAAGTTTCTTAGGCGAAAATGTAGTAATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCCAAGCTTCTCTTACACCTCCCCATGAACATCCGAAGCCATGCTGCGATTACCGTTGCTTACGAAGCTCTCGAGCGCATGAGAGATCCCACGTATGGTTGTGTCGCCCATATCTTCGCATTGCAGCAAGAGGTCGTTTTCAAACCCTAAAACTTAAACTCATGGGTTACCGTAAATTTATTGTTTTTTATTCATATTCTTAACACTGATGAGATTGTTTCAAAGCCTTAAGGAAGCGTTTGGAGTACCGTTTTAGAATCAGAACCTTGTGGTTTGTTCTAAGGAGTTTGAAATCCTAAAAATTAGAAAACAATGTTTGAAGTACAGTATTCTGAAGTCTGAAAATCATAAAATAGTGTTTGGAGTGTACTTCGTTGTGTTCAAAACTATGAGGTTGTGTTTCAAACTTATTAAGGTTTAGAACACAGTAGTCTAATAATAATGTTGTGGATTTAGATGGTTTATCCAAACTTAATATAGAGCTCCAAACCCTCCTTGAAAACTTAAACGGATGGGTTATGATAAATTTATTGTTTTGTCTTAATTCATAGTCTCCCATAATCACTTGTGAAAGACCCAACAAATGATTATGGAAGAAATAACATAACAAGGGTTTGAACAACACATGATGATCCTCTATTGTCATACTATACCTCCAACGACCACTACTAAATTTAAGAACTTAAGCCGATGGATGAGTTATAACAAATTTCCTTTTCTTTTCTTTTTTTTTTTTTTTCCTAATCAATATTCTTAAGAATATTCTCCTAGCTAGCCTACATTTGTCTCTCTATATATTAATATATATCTTCCTCTTGTAGGTCGCGAACTTGCAAGAAGAGATAGAAATTCTAGGGAGCCAAATAGCCAACTTTACCGCCGGTGACGGTGGCGTTGCGGCGGTCGAGTCGCAGCAGCTGAAGCTGAATGATTTGGTGATGAACTCAAACGAGCTGCTTTCTCAATTGCCCCACCAAACTTGTGATCAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTAGTTTAGGGGAAGAAGAAGGGTTTTTTGGGTGCAACCCAAATATTAATGTTGTGGAGAGATCAGCATTTGATGTTTCAGTTGAGGAGAATTTTGCTTGTTATCCATGCTAGTTGGAACAAGAAGAACAACAAGAAGAAATGAAGTTTTGCAC

mRNA sequence

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCATCTTCTTGTGGTGCCTGCAAGTTTCTTAGGCGAAAATGTAGTAATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCCAAGCTTCTCTTACACCTCCCCATGAACATCCGAAGCCATGCTGCGATTACCGTTGCTTACGAAGCTCTCGAGCGCATGAGAGATCCCACGTATGGTTGTGTCGCCCATATCTTCGCATTGCAGCAAGAGGTCGCGAACTTGCAAGAAGAGATAGAAATTCTAGGGAGCCAAATAGCCAACTTTACCGCCGGTGACGGTGGCGTTGCGGCGGTCGAGTCGCAGCAGCTGAAGCTGAATGATTTGGTGATGAACTCAAACGAGCTGCTTTCTCAATTGCCCCACCAAACTTGTGATCAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTAGTTTAGGGGAAGAAGAAGGGTTTTTTGGGTGCAACCCAAATATTAATGTTGTGGAGAGATCAGCATTTGATGTTTCAGTTGAGGAGAATTTTGCTTGTTATCCATGCTAGTTGGAACAAGAAGAACAACAAGAAGAAATGAAGTTTTGCAC

Coding sequence (CDS)

ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCATCTTCTTGTGGTGCCTGCAAGTTTCTTAGGCGAAAATGTAGTAATCAATGTGTTTTTGCTCCTTTCTTCAGCTATGATGAAGCTACTTCCCATTTTGCAGCTGTTCATAAAGTGTTTGGTGCTAGCAATGTCTCCAAGCTTCTCTTACACCTCCCCATGAACATCCGAAGCCATGCTGCGATTACCGTTGCTTACGAAGCTCTCGAGCGCATGAGAGATCCCACGTATGGTTGTGTCGCCCATATCTTCGCATTGCAGCAAGAGGTCGCGAACTTGCAAGAAGAGATAGAAATTCTAGGGAGCCAAATAGCCAACTTTACCGCCGGTGACGGTGGCGTTGCGGCGGTCGAGTCGCAGCAGCTGAAGCTGAATGATTTGGTGATGAACTCAAACGAGCTGCTTTCTCAATTGCCCCACCAAACTTGTGATCAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTAGTTTAGGGGAAGAAGAAGGGTTTTTTGGGTGCAACCCAAATATTAATGTTGTGGAGAGATCAGCATTTGATGTTTCAGTTGAGGAGAATTTTGCTTGTTATCCATGCTAG

Protein sequence

MTGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAGDGGVAAVESQQLKLNDLVMNSNELLSQLPHQTCDQVQINDAQMISPLFSLGEEEGFFGCNPNINVVERSAFDVSVEENFACYPC

Homology

[Close]

BLAST of Tan0001488 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-41
Identity = 84/140 (60.00%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 8   SSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMNIR 67
           +S  SSCGACKFLRRKC+  CVF+P+FSY++A+SHFAAVHKVFGASNVSK LLHLP + R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 68  SHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAGDGGVAAV 127
           + AAIT++YEAL RMRDP YGCVAHIFAL Q+V  LQEEIE LGSQ+ NF+  +   + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 128 ESQQLKLNDLVMNSNELLSQ 148
            +    +N + M +   + +
Sbjct: 122 NNIPEFVNQMTMATTNFVDE 141

[Close]

BLAST of Tan0001488 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.0e-37
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 5   TSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPM 64
           +SSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 65  NIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIA 116
           + R  AAIT++YEA  R++DP YGCV+HIFALQQ+V NLQ E+EIL  Q A
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAA 113

[Close]

BLAST of Tan0001488 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-33
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 3   GLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHL 62
           G +S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+
Sbjct: 27  GGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHI 86

Query: 63  PMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIAN 117
           P++ RS A +T+ YEA  R+RDP YGCVAHIFALQQ+V NLQ E+  L + +A+
Sbjct: 87  PVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of Tan0001488 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-32
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 12  SSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMNIRSHAA 71
           S CGACKFLRRKC   CVFAP+F +++  +HFAA+HKVFGASNVSKLL HLP+  R  AA
Sbjct: 6   SPCGACKFLRRKCVRGCVFAPYFCHEQGAAHFAAIHKVFGASNVSKLLAHLPLADRPEAA 65

Query: 72  ITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIA 116
           +T++YEA  R+RDP YGCVAHIFALQQ+V  LQ ++  L +  A
Sbjct: 66  VTISYEAQARLRDPIYGCVAHIFALQQQVMTLQAQLASLKAAAA 109

[Close]

BLAST of Tan0001488 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.6e-32
Identity = 66/122 (54.10%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 2   TGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 61
           +G  +++ + S CGACKFLRRKC++ C+FAP+FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 62  LPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAGD 121
           +P++ R  A +T+AYEA  R+ DP YGCV+HIFALQQ+VA LQ ++  + +QIA      
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 122 GG 124
            G
Sbjct: 124 AG 125

[Close]

BLAST of Tan0001488 vs. NCBI nr
Match: XP_023542245.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-80
Identity = 168/212 (79.25%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 1   MTGLT--SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKL 60
           MTGLT  SSSSSSSSCGACKFLRRKCSN CVFAPFF+YDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFT 120
           LLHLPM+IRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ +LQEEI++LGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIVSLQEEIDMLGSQIANFT 120

Query: 121 AGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMISPLF 180
           A    VA VE+  +      +LNDLVMN+    NELLSQLP  T D+V+ NDAQMISPLF
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLP--TFDEVETNDAQMISPLF 180

Query: 181 SLGEEEGFFGCNPNINVVERSAFDVSVEENFA 201
            +GEEEGFFGCNPN N +E SAFDVSV+ENFA
Sbjct: 181 CIGEEEGFFGCNPN-NAMENSAFDVSVDENFA 209

[Close]

BLAST of Tan0001488 vs. NCBI nr
Match: XP_022996495.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 307.0 bits (785), Expect = 1.2e-79
Identity = 165/214 (77.10%), Postives = 182/214 (85.05%), Query Frame = 0


Query: 1   MTGLT----SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60
           MTGLT    SSSSSSSSCGACKFLRRKCSN CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIAN 120
           KLLLHLPM++RSHAAITV+YEALERMRDPTYGCVAHIF LQQE+ +LQEEI++LGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTAGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMISP 180
           FT     VA VE+  +      +LN+LVMN+    NELLSQLP  T D+VQINDAQMISP
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLP--TFDEVQINDAQMISP 180

Query: 181 LFSLGEEEGFFGCNPNINVVERSAFDVSVEENFA 201
           LF +GEEEGFFGCNPN N +E SAFDVSV+ENFA
Sbjct: 181 LFCIGEEEGFFGCNPN-NAMENSAFDVSVDENFA 211

[Close]

BLAST of Tan0001488 vs. NCBI nr
Match: XP_022941701.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 305.1 bits (780), Expect = 4.7e-79
Identity = 165/211 (78.20%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MTGLT--SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKL 60
           MTGLT  SSSSSSSSCGACKFLRRKCSN CVFAPFF+YDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFT 120
           LLHLPM+IRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ +LQEEI++LGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120

Query: 121 AGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMISPLF 180
           A    VA VE+  +      +LNDLVMN+    NELLSQLP+   DQV+INDAQMISPLF
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN--FDQVEINDAQMISPLF 180

Query: 181 SLGEEEGFFGCNPNINVVERSAFDVSVEENF 200
            +GEE+GFFGCNPN N +E SAFDV+V+E F
Sbjct: 181 CIGEEDGFFGCNPN-NAMENSAFDVAVDETF 208

[Close]

BLAST of Tan0001488 vs. NCBI nr
Match: KAG6600038.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 303.9 bits (777), Expect = 1.0e-78
Identity = 165/219 (75.34%), Postives = 185/219 (84.47%), Query Frame = 0


Query: 1   MTGLT-----SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNV 60
           MTGLT     SSSSSSSSCGACKFLRRKCSN CVFAPFF+Y+EATSHFAAVHKVFGASNV
Sbjct: 1   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 60

Query: 61  SKLLLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIA 120
           SKLLLHLPM+IRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ +LQEEI++LGSQIA
Sbjct: 61  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 120

Query: 121 NFTAGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMIS 180
           NFTA    V  VE+  +      +LNDLVMN+    NELLSQLP+   D+V+INDAQMIS
Sbjct: 121 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN--LDRVEINDAQMIS 180

Query: 181 PLFSLGEEEGFFGCNPNINVVERSAFDVSVEENFACYPC 205
           PLF +GEE+GFFGCNPN N +E SAFDV+++ENFA Y C
Sbjct: 181 PLFCIGEEDGFFGCNPN-NAMENSAFDVAIDENFA-YLC 215

[Close]

BLAST of Tan0001488 vs. NCBI nr
Match: KAG7030707.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-78
Identity = 163/215 (75.81%), Postives = 183/215 (85.12%), Query Frame = 0


Query: 1   MTGLT-----SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNV 60
           MTGLT     SSSSSSSSCGACKFLRRKCSN CVFAPFF+Y+EATSHFAAVHKVFGASNV
Sbjct: 2   MTGLTSSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYEEATSHFAAVHKVFGASNV 61

Query: 61  SKLLLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIA 120
           SKLLLHLPM+IRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ +LQEEI++LGSQIA
Sbjct: 62  SKLLLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIA 121

Query: 121 NFTAGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMIS 180
           NFTA    V  VE+  +      +LNDLVMN+    NELLSQLP+   D+V+INDAQMIS
Sbjct: 122 NFTADMDNVTVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN--LDRVEINDAQMIS 181

Query: 181 PLFSLGEEEGFFGCNPNINVVERSAFDVSVEENFA 201
           PLF +GEE+GFFGCNPN N +E SAFDV+++ENFA
Sbjct: 182 PLFCIGEEDGFFGCNPN-NAMENSAFDVAIDENFA 213

[Close]

BLAST of Tan0001488 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.9e-80
Identity = 165/214 (77.10%), Postives = 182/214 (85.05%), Query Frame = 0


Query: 1   MTGLT----SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVS 60
           MTGLT    SSSSSSSSCGACKFLRRKCSN CVFAPFF+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIAN 120
           KLLLHLPM++RSHAAITV+YEALERMRDPTYGCVAHIF LQQE+ +LQEEI++LGSQIAN
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIAN 120

Query: 121 FTAGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMISP 180
           FT     VA VE+  +      +LN+LVMN+    NELLSQLP  T D+VQINDAQMISP
Sbjct: 121 FTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLP--TFDEVQINDAQMISP 180

Query: 181 LFSLGEEEGFFGCNPNINVVERSAFDVSVEENFA 201
           LF +GEEEGFFGCNPN N +E SAFDVSV+ENFA
Sbjct: 181 LFCIGEEEGFFGCNPN-NAMENSAFDVSVDENFA 211

[Close]

BLAST of Tan0001488 vs. ExPASy TrEMBL
Match: A0A6J1FLU4 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446983 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.3e-79
Identity = 165/211 (78.20%), Postives = 182/211 (86.26%), Query Frame = 0


Query: 1   MTGLT--SSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKL 60
           MTGLT  SSSSSSSSCGACKFLRRKCSN CVFAPFF+YDEATSHFAAVHKVFGASNVSKL
Sbjct: 1   MTGLTSYSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKL 60

Query: 61  LLHLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFT 120
           LLHLPM+IRSHAAITVAYEALERMRDPTYGCVAHIFALQQE+ +LQEEI++LGSQIANFT
Sbjct: 61  LLHLPMHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEIMSLQEEIDMLGSQIANFT 120

Query: 121 AGDGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMISPLF 180
           A    VA VE+  +      +LNDLVMN+    NELLSQLP+   DQV+INDAQMISPLF
Sbjct: 121 ADMDNVAVVENPCIELQVSKQLNDLVMNTNDYQNELLSQLPN--FDQVEINDAQMISPLF 180

Query: 181 SLGEEEGFFGCNPNINVVERSAFDVSVEENF 200
            +GEE+GFFGCNPN N +E SAFDV+V+E F
Sbjct: 181 CIGEEDGFFGCNPN-NAMENSAFDVAVDETF 208

[Close]

BLAST of Tan0001488 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.3e-71
Identity = 156/217 (71.89%), Postives = 179/217 (82.49%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGL +SS+SS+SCGACKFLRRKCS+QCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGL-NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAG 120
           HLP +IRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVA+LQEEIEILGSQIANF   
Sbjct: 61  HLPTHIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVASLQEEIEILGSQIANFATT 120

Query: 121 DGGVAAVES---QQLKLNDL-----VMNS----NELLSQLPHQTCDQVQIND--AQMISP 180
            G +AAV++    Q+++        +MN+    NEL+S+LP+Q+ D VQ ++  AQMISP
Sbjct: 121 GGSIAAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSELPYQSFDNVQNDNTTAQMISP 180

Query: 181 LFSLGEEEGFFGCNPNINVVERSAFDVSVEENFACYP 204
           LF LGEE+G F  + + NVVE SAFDVSVEEN   YP
Sbjct: 181 LFCLGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYP 216

[Close]

BLAST of Tan0001488 vs. ExPASy TrEMBL
Match: A0A6J1CDB4 (LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.6e-71
Identity = 151/213 (70.89%), Postives = 163/213 (76.53%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTG   SSSS SSCGACKFLRRKCS+QCVFAPFFSY+EATSHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGFAYSSSSFSSCGACKFLRRKCSDQCVFAPFFSYEEATSHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAG 120
           HLP++ RSHAAITVAYEALERMRDPTYGC+AHIFALQQEVA+LQEEIEILGSQIANFT  
Sbjct: 61  HLPVHNRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVASLQEEIEILGSQIANFTTA 120

Query: 121 DGGVAAVESQQL------KLNDLVMNS----NELLSQLPHQTCDQVQINDAQMISPLFSL 180
              VA  E+  +      +L+D VMN+    N L SQLPHQT D    NDAQMISPL  L
Sbjct: 121 TDTVATTENPFIELQVSQQLSDFVMNTDDYQNHLFSQLPHQTFDHRGQNDAQMISPLCCL 180

Query: 181 GEEEGFFGCNPNINVVERSAFDVSVEENFACYP 204
           GEE G+FGCNPN              ENFA YP
Sbjct: 181 GEENGYFGCNPN------------AMENFASYP 201

[Close]

BLAST of Tan0001488 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 9.5e-70
Identity = 153/218 (70.18%), Postives = 170/218 (77.98%), Query Frame = 0


Query: 1   MTGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60
           MTGL +SS++SSSCGACKFLRRKCS+QCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL
Sbjct: 1   MTGL-NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLL 60

Query: 61  HLPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAG 120
           HLP + RSHAAITVAYEALERMRDPTYGC+AHIFALQQEV +LQEEIEILGSQIAN    
Sbjct: 61  HLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEIEILGSQIANLATT 120

Query: 121 DGGVAAVE----------SQQL---KLNDLVMNSNELLSQLPHQTCDQVQ-INDAQMISP 180
            G +AAVE          SQQ+   ++ +     NEL S+LP+Q+ D +Q  N AQMISP
Sbjct: 121 GGSIAAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASELPYQSFDNIQNDNTAQMISP 180

Query: 181 LFSLGEEEGFFG-CNPNINVVERSAFDVSVEENFACYP 204
           LF LGEE+G F  CN N  V   SAFDVSVEEN   YP
Sbjct: 181 LFCLGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYP 217

[Close]

BLAST of Tan0001488 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-42
Identity = 84/140 (60.00%), Postives = 107/140 (76.43%), Query Frame = 0


Query: 8   SSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMNIR 67
           +S  SSCGACKFLRRKC+  CVF+P+FSY++A+SHFAAVHKVFGASNVSK LLHLP + R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 68  SHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAGDGGVAAV 127
           + AAIT++YEAL RMRDP YGCVAHIFAL Q+V  LQEEIE LGSQ+ NF+  +   + +
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQMKNFSYSNQNGSQL 121

Query: 128 ESQQLKLNDLVMNSNELLSQ 148
            +    +N + M +   + +
Sbjct: 122 NNIPEFVNQMTMATTNFVDE 141

[Close]

BLAST of Tan0001488 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 155.6 bits (392), Expect = 4.2e-38
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 5   TSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPM 64
           +SSSSS S CGACKFLRRKC+  CVFAP+F +++  SHFAA+HKVFGASN SKLL HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 65  NIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIA 116
           + R  AAIT++YEA  R++DP YGCV+HIFALQQ+V NLQ E+EIL  Q A
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAA 113

[Close]

BLAST of Tan0001488 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 68/114 (59.65%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 3   GLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHL 62
           G +S       CGACKFLRRKC   C+FAP+F  ++ +++FAAVHKVFGASNVSKLLLH+
Sbjct: 27  GGSSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHI 86

Query: 63  PMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIAN 117
           P++ RS A +T+ YEA  R+RDP YGCVAHIFALQQ+V NLQ E+  L + +A+
Sbjct: 87  PVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS 140

[Close]

BLAST of Tan0001488 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-33
Identity = 66/122 (54.10%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 2   TGLTSSSSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLH 61
           +G  +++ + S CGACKFLRRKC++ C+FAP+FS ++  + FAA+HKVFGASNVSKLLL+
Sbjct: 4   SGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLN 63

Query: 62  LPMNIRSHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQIANFTAGD 121
           +P++ R  A +T+AYEA  R+ DP YGCV+HIFALQQ+VA LQ ++  + +QIA      
Sbjct: 64  VPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSA 123

Query: 122 GG 124
            G
Sbjct: 124 AG 125

[Close]

BLAST of Tan0001488 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-33
Identity = 66/106 (62.26%), Postives = 81/106 (76.42%), Query Frame = 0


Query: 8   SSSSSSCGACKFLRRKCSNQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPMNIR 67
           + S S CGACKFLRR+C   CVFAP+F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 68  SHAAITVAYEALERMRDPTYGCVAHIFALQQEVANLQEEIEILGSQ 114
             AA T+ YEA  R +DP YGCV+HIF+LQQ+V NLQ ++EIL  Q
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQ 107

The following BLAST results are available for this feature:

BLAST of Tan0001488 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	1.8e-41	60.00	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	6.0e-37	67.57	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
O22131	2.4e-33	59.65	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q5UG13	1.5e-32	63.46	LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q9SLB7	2.6e-32	54.10	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]

BLAST of Tan0001488 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023542245.1	1.4e-80	79.25	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996495.1	1.2e-79	77.10	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
XP_022941701.1	4.7e-79	78.20	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
KAG6600038.1	1.0e-78	75.34	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7030707.1	1.8e-78	75.81	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]

BLAST of Tan0001488 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K6X9	5.9e-80	77.10	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]
A0A6J1FLU4	2.3e-79	78.20	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111446...	[more]
A0A0A0KNX8	1.3e-71	71.89	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A6J1CDB4	6.6e-71	70.89	LOB domain-containing protein 33 OS=Momordica charantia OX=3673 GN=LOC111010160 ...	[more]
A0A1S3CGM1	9.5e-70	70.18	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]

BLAST of Tan0001488 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	1.3e-42	60.00	LOB domain-containing protein 33	[more]
AT3G58190.1	4.2e-38	67.57	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.7e-34	59.65	LOB domain-containing protein 18	[more]
AT2G42430.1	1.8e-33	54.10	lateral organ boundaries-domain 16	[more]
AT2G42440.1	1.8e-33	62.26	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 1..142
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 1..142
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 13..109 e-value: 3.1E-33 score: 114.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 12..114 score: 21.75206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001488.1	Tan0001488.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus