Tan0001487 (gene) Snake gourd v1

Overview
NameTan0001487
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
Descriptionheterogeneous nuclear ribonucleoprotein F
LocationLG07: 12064784 .. 12069408 (+)
RNA-Seq ExpressionTan0001487
SyntenyTan0001487
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCTGTCCCTTATTTACCTTGGAAATTTGGATTCAGATTTCACAATTCAACTGAAGCTGCAAGGCCTTCGGCTTCAACAACAACTGGTATCCCTTATCAGCATGAACATGTTCTACCGAGGGTAAGTTTCCCCTTCCTCTGATCTCTATTCACAACTTTTTGCTATTTCTACGATTCTTTTCCCCTTTAATTCTTGAGTATTTACATCGATTTGGGGCTTTGAATCTTTTTTCTGTAATTTCTTAACTGATGGGGATTCCAAGCTTCTATTCACTATTTATTCTTACATACCATTATCAGTTTCCTTCATCACTCACTCTGAAACTTTCGTTCTTTCTTTTGTTGGATTAGAATTAGAATTATTAAGAGGGTTGTTTTATTGATTTCGAATATCTCCGATTATGGGTTTGACCGTGTATGCGTGGATGTTGTTCTTCTGGGTTCTTATCGCTTTGCGAATTCTTTGCACGACAGGATGATTTAAATATGATGTATGGTTGAACTAGCAGAGCAAAATATAACCGAAGTTTTAACTTGAAAATTTTCCGTATTCAGTTTTTTGTTTGAGTGAGTCCTAGTGGTTGGATGATTAGTTGGCAAGTTTATATGATTTAGAAGTCTGGGTTGTTGAATTGTTATCAATTAATTATTGGTATTGGCCATTGGGAACGCCTGAGCTTTCATTTCTATTGTCTTAATAATATATGAGGACGTTTTAGAGTGGGAGAGATTGGAAAATGAGGAAAGGACAAGAGGTCCAAATTTGTTCAACAACCAAAGAAGGCTAAAATAGAAACTCCACTATAAGTGTGAATCAAAAAGGAAGAATGACTTCAAATCCATTACAAGTGTGTACCACCTAGAGGAGGCAGAAGAACATATTCTCCTTGACTTCCTGTACATCCCTAAGGGTATTGACAAAAAATTCAACTGTTACTGTCACTCTAAATCTGCCAAATCCTGCTAGAAACAGTTAAACCACAAATTTTGCTTTAGTCTCAAATTTTTTATTGGAATTTATAGGATACATTATTGGAGGGAAATTTATAGGATATGGTCTTGGAGGGAAAGGGCATTGGCCTGAAAGGAAGCAAGTGGATATTCAATTGTATTGGCACTACCTTTTTTTTTCCTCAATGGAAAAACTCATAGTAGAATTAAAGCTTCAAGAGGGCAAGACTGTTTTAGTTTACTGAAGTTCTTGGTCTATGTCATACCCTAACCTTGGTCTCATCCATTGAGGGTCCCCCAAGATCCCTCAATTTTTGGGAATTGATGGAAGATAGCATGAGGAATAGAAAGCTCCAAACTAAGTCTTATTCAATATGTTTTATCTAGAAGTTCGGCATATTACATGTCTCTCTTCAAAATTCCTATTTCTATAGCCAGGTTCTGGAGAAACACTTCAGTATTTCTCCTGGCATGATGATTCCAAGTCAACAGGCTCCCACCTTGTGTCAATTTGTAATATTCCCGAGCTTCATGTTGTTGTTTAAAGAGATTTGTGTATTGGCAATGTAATCAATCATAATTTGGCCCTCATTTTAACTGGTCATTAGAGATAGACAGATGAACCAAATTCTCTCTATCACAAGGTCATTTCTAGTAAACATGATGCTTAAACGAACGAGTGGTTTCCCCCTTGATAAAAATTCCAGCACCCAAGTGTTCAATCCTCCGGTGGATTTCTTTTTTTTTTTTTTTTTGGATAGGAAACAAACGTCATTTCATTGATATCTGAAATAGATACAAGAAAATCCTATCAGAGATATTTACAAAAAGGATCTCCAGTGTGATAATAGGGTCGATAAACTATAACTACAAAAAGGGGGAGTTAAAATGCTCCAAGTTAAAGCAAAATAAGTGGTAGATTTGATGAATGAGTGACTACCCTGTTGCTTATCTTTAAAGATCCTAGCATTCCTTTCAAGCCAAAGATTCTAGAAGAAAGCTATATGAAGTTGAGCCAAAGAATCTTCTTTCCCTTCTTAAAAGGATGCCCAATGAGAGATATATTGGGAGAATTGCTGACCCCAAACCCTCGCATTGAGGCCTCTCTTGCGGATTACTACCATACCTCTATACTACTATGAAAAACAAATATAGAAAGAGAGCTGACTGTCAGTGTCAGGACTGTAGACACAATAGCCTGGAACCTGGTTTTTTAAAGACATCTTAGGACAAGGATTTAGAACTTTTGTAGGAAATTAGCTCATTTAGGCCATTTTGGAAGGAAGGCAGGAGAAATTTGGAGTTTCGACATATGTGGAAATATGTCCAGCAAGTCTCTTTTCATCACCATCTTGTCTCATACCCAGCTATTAAAAAAACTATGGCTAATTTCATTTGGAGGAGAAAGATTACCAAAAAGATTAAGTCTTCTTATGGATAACTGTTTGGAGAGTATTAAACTAAACACCTTTGAAAAGTTGCAGGCAAGATTGCAATCCTTTTTTTTTCTTTTAGTGGTTGTTTGGGGCGTTAAGTGAGTTACAATAACATGAGTTATAATAGTCTGTGGAATCATATAATATTATTTAAAATGCAGAGTTGTTTAGTCTGGGGTTATAATAGTCTGTGTTTGGGGTGCAGAGTATTCCACATGTTATATTAACCTGTGCCCCAAACATGCCCTTAATCTTCAAAGTTCAAACTGATGGATAACGTGCAAAATCATCTTTTCCTTTGCTTCGATTTTGGAGCCAACCTCGGAGCAACCCTCTCTTGATTTACAGTTTTTGTAATCCTAAACTGCGAAGAGGATGAAATAATCTTTTCGGGACTGTTTGAGGTGTTGAGTGAGTTGTAATAACATGAGTTATAATAGTCTGTGGGTTATTATAGTATGTGGAATTATATAATATTATTTAAAATGCAGAGTTGTTTAGTCTGAGGTTATAATAGTCTGTGTTTGGGGTGCAGAGTATTCCACAAATTATTATAACACATTTTATGATAAATCGTGCCCCAAATAGACTCTGAATTATAACTGTTCTTGTCAATAGAGTCAATAGTTAACTTTAATGTAGTCCTTTACTGTTAATATTATGGGTGGTGGCATGGAATATTCTGTGGGTATTGGACATTTGGTAATGCATCTCAGCAGTTGAGTTAGAACTTGAAGTGTCTGGCTTTTTTTGTATATGTCTTCTGTGTTTGGAAAATAGTGAAGTTTACCCACATTTGTTTATATGGGAAACATGAAACCACATTATCTATATTTTTATACCAAGCAAAATGTATGCTAATTAGTAGATGTGCATAGGACTATAGGAGCCATCTCTTCGTTATCTGCATACCAATGAATGGGAGAAGTGTGAATATTTTTCTTATATTCGATACATTGATATTTTGATCTCTTGGGATGGAGTATTGATGAGGTTTCTGTTTTTGTGAATTTTATGTTTCTGTTTGGACTGAAGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATATGTTAGTCAGCCACCACCATTTCCTGTTGTCAGACTTCGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTTGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTACAGGTTGATTTTGCTCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCCGTAGCAAATGAAGTTTTTGACGCCCGGGGTGGTTCACCGAGAAGAACTGCACCCAGGTCAAAGTTAAACGATGACGTGAAAGACTCTGCTGAACACACCGGTGTATTGCGCTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTAACTTATCAGAAGACACGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAGGACTCAAAAGCAGCCATGTCTAAGGATAGAATGACACTGGGTAGCCGTTACATAGAGTTGTTCCCATCGTCACACGAAGAGCTAGACGAAGCAATCTCTAGAGGACGGTGACACCAGCTATTCTATTAACTGTTTTTCTTCAATTACTATGTTGTTTTGATTTTGGAGCAGTGAGATCTATGGAGTTAGAAGTGAATAGGAGCTAAGTTTGTTTGTGTGTTTATGGTGACCCTACATTCTCTCTACTTTCCAGGACCATTGTTTGCCAGACGAGCAGGTCGTATCACTCTCGTCTGCATAAATTCGTGAAAAGAATTCAGTTACAAAGCCTCTCTATATGTATTAACCATTTCTCTGAGAAGATGCTTAAAATATCTCAAGGTTATGTGGAATTTTCTCACAACTTTTCCAATCTTTAGAGGCTGGAAATCTCTGTATTTGGATCAAAATCTTACAAGGTTAGATTTATATGTTGGGCAATGCTGTACTTGGTTTATAAACTCTATGTCATTTTTGTCTTTAAATTAAAGTTGAAGGGTGAGAGAGAAA

mRNA sequence

GCTTCTGTCCCTTATTTACCTTGGAAATTTGGATTCAGATTTCACAATTCAACTGAAGCTGCAAGGCCTTCGGCTTCAACAACAACTGGTATCCCTTATCAGCATGAACATGTTCTACCGAGGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATATGTTAGTCAGCCACCACCATTTCCTGTTGTCAGACTTCGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTTGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTACAGGTTGATTTTGCTCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCCGTAGCAAATGAAGTTTTTGACGCCCGGGGTGGTTCACCGAGAAGAACTGCACCCAGGTCAAAGTTAAACGATGACGTGAAAGACTCTGCTGAACACACCGGTGTATTGCGCTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTAACTTATCAGAAGACACGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAGGACTCAAAAGCAGCCATGTCTAAGGATAGAATGACACTGGGTAGCCGTTACATAGAGTTGTTCCCATCGTCACACGAAGAGCTAGACGAAGCAATCTCTAGAGGACGGTGACACCAGCTATTCTATTAACTGTTTTTCTTCAATTACTATGTTGTTTTGATTTTGGAGCAGTGAGATCTATGGAGTTAGAAGTGAATAGGAGCTAAGTTTGTTTGTGTGTTTATGGTGACCCTACATTCTCTCTACTTTCCAGGACCATTGTTTGCCAGACGAGCAGGTCGTATCACTCTCGTCTGCATAAATTCGTGAAAAGAATTCAGTTACAAAGCCTCTCTATATGTATTAACCATTTCTCTGAGAAGATGCTTAAAATATCTCAAGGTTATGTGGAATTTTCTCACAACTTTTCCAATCTTTAGAGGCTGGAAATCTCTGTATTTGGATCAAAATCTTACAAGGTTAGATTTATATGTTGGGCAATGCTGTACTTGGTTTATAAACTCTATGTCATTTTTGTCTTTAAATTAAAGTTGAAGGGTGAGAGAGAAA

Coding sequence (CDS)

ATGAACATGTTCTACCGAGGTTCATATGCTGATGGTGGTGATGGTCGTGAAATGGGTGCAAAGCGTCAAAGGATAGTTGATCAGGGATCTTCTTATTATGGGACTTCTCCGGGTTCTGGGTTTATGTATAATACAAGTCCCTATGCATATGTTAGTCAGCCACCACCATTTCCTGTTGTCAGACTTCGGGGTCTTCCCTTCGATTGCATGGAAACTGATGTTGCTGAGTTCTTTCATGGTCTGGACATAGTTGACATTCTTTTTGTCCACAAGAATGGCAAATTCACAGGGGAAGGTTTTTGTGTTTTGGGCTATCCTCTACAGGTTGATTTTGCTCTTCAGAGGAATAGGCAAAACATGGGCAGAAGATATGTTGAGATTTTCAGGAGTAATCGACAGGAATACTACAAGGCCGTAGCAAATGAAGTTTTTGACGCCCGGGGTGGTTCACCGAGAAGAACTGCACCCAGGTCAAAGTTAAACGATGACGTGAAAGACTCTGCTGAACACACCGGTGTATTGCGCTTGAGAGGACTGCCATATTCAGCAGGCAAGGATGACATACTGGACTTCTTCAAAGATTTTAACTTATCAGAAGACACGATTCATTTAACACTGAATTCAGAGGGGAGGCCAAGTGGGGAAGCATTTGTCGAATTCGCAAACGAGCAGGACTCAAAAGCAGCCATGTCTAAGGATAGAATGACACTGGGTAGCCGTTACATAGAGTTGTTCCCATCGTCACACGAAGAGCTAGACGAAGCAATCTCTAGAGGACGGTGA

Protein sequence

MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR
Homology
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BLAST of Tan0001487 vs. ExPASy Swiss-Prot
Match: P52597 (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

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BLAST of Tan0001487 vs. ExPASy Swiss-Prot
Match: Q60HC3 (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 72/199 (36.18%), Postives = 115/199 (57.79%), Query Frame = 0 

Query: 59  VVRLRGLPFDCMETDVAEFFHGLDIVD----ILFVH-KNGKFTGEGFCVLGYPLQVDFAL 118
           VV+LRGLP+ C   DV  F     I D    + F++ + G+ +GE F  LG    V  AL
Sbjct: 12  VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMAL 71

Query: 119 QRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGV 178
           +++R++MG RY+E+F+S+R E    +            + + P S       DSA + G 
Sbjct: 72  KKDRESMGHRYIEVFKSHRTEMDWVL------------KHSGPNS------ADSA-NDGF 131

Query: 179 LRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKD 238
           +RLRGLP+   K++I+ FF    +  + I L ++ EG+ +GEAFV+FA+++ ++ A+ K 
Sbjct: 132 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKH 191

Query: 239 RMTLGSRYIELFPSSHEEL 253
           +  +G RYIE+F SS EE+
Sbjct: 192 KERIGHRYIEVFKSSQEEV 191

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BLAST of Tan0001487 vs. ExPASy Swiss-Prot
Match: Q8R4X3 (RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-26
Identity = 73/210 (34.76%), Postives = 111/210 (52.86%), Query Frame = 0 

Query: 60  VRLRGLPFDCMETDVAEFFHGL--DIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNR 119
           V + G+PF  ME DV EFFHGL  D V +L  H  G+  G G      P     AL+RNR
Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNR 365

Query: 120 QNMGRRYVEIFRSNRQEYYKAVANEVFDARGG------SPRRTAPRSKLNDDVKDSAEHT 179
             M +RYVE+  +  +++  A  +  F    G       P +T PRSK     K S   +
Sbjct: 366 MLMIQRYVEVSPATERQWVAAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRS 425

Query: 180 G-----VLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDS 239
                  + L+GLP+ A    ++DFFK  ++ ED+I++     G+ +GE FVEF N+ D 
Sbjct: 426 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNDADY 485

Query: 240 KAAMSKDRMTLGSRYIELFPSSHEELDEAI 257
           KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 486 KAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of Tan0001487 vs. ExPASy Swiss-Prot
Match: Q9NTZ6 (RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.9e-26
Identity = 76/224 (33.93%), Postives = 115/224 (51.34%), Query Frame = 0 

Query: 52  SQPPPFPV------VRLRGLPFDCMETDVAEFFHGL--DIVDILFVHKNGKFTGEGFCVL 111
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 112 GYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGG------SPRRTAPR 171
             P     AL+RNR  M +RYVE+  +  +++  A  +  F    G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQTHPPPQTLPR 411

Query: 172 SKLNDDVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRP 231
           SK     K S   +       + L+GLP+ A    ++DFFK  ++ ED+I++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 232 SGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 257
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of Tan0001487 vs. ExPASy Swiss-Prot
Match: Q8SQ27 (RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.9e-26
Identity = 76/224 (33.93%), Postives = 115/224 (51.34%), Query Frame = 0 

Query: 52  SQPPPFPV------VRLRGLPFDCMETDVAEFFHGL--DIVDILFVHKNGKFTGEGFCVL 111
           S   P P+      V + G+PF  ME DV +FFHGL  D V +L  H  G+  G G    
Sbjct: 292 SSVKPLPINPDDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKF 351

Query: 112 GYPLQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANEVFDARGG------SPRRTAPR 171
             P     AL+RNR  M +RYVE+  +  +++  A  +  F    G       P +T PR
Sbjct: 352 LSPQDTFEALKRNRMLMIQRYVEVSPATERQWVAAGGHITFKQNMGPSGQSHPPPQTLPR 411

Query: 172 SKLNDDVKDSAEHTG-----VLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRP 231
           SK     K S   +       + L+GLP+ A    ++DFFK  ++ ED+I++     G+ 
Sbjct: 412 SKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 471

Query: 232 SGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAI 257
           +GE FVEF NE D KAA+ + +  +G+R+I++ P + + + E I
Sbjct: 472 TGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKKGMLEKI 514

[Close]
BLAST of Tan0001487 vs. NCBI nr
Match: XP_004142112.1 (heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PREDICTED: heterogeneous nuclear ribonucleoprotein F [Cucumis melo] >KGN54181.1 hypothetical protein Csa_018007 [Cucumis sativus])

HSP 1 Score: 521.5 bits (1342), Expect = 4.0e-144
Identity = 253/260 (97.31%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]
BLAST of Tan0001487 vs. NCBI nr
Match: XP_038901811.1 (heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida])

HSP 1 Score: 517.7 bits (1332), Expect = 5.8e-143
Identity = 251/260 (96.54%), Postives = 256/260 (98.46%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKD AEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDCAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]
BLAST of Tan0001487 vs. NCBI nr
Match: TYJ96136.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 506.1 bits (1302), Expect = 1.8e-139
Identity = 246/253 (97.23%), Postives = 251/253 (99.21%), Query Frame = 0 

Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 99  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 158

Query: 68  DCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 159 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 218

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 219 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 278

Query: 188 ILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 279 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 338

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 339 SHEELDEAISRGR 351

[Close]
BLAST of Tan0001487 vs. NCBI nr
Match: KAA0041416.1 (heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 506.1 bits (1302), Expect = 1.8e-139
Identity = 246/253 (97.23%), Postives = 251/253 (99.21%), Query Frame = 0 

Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 58  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 117

Query: 68  DCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 118 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 177

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 178 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 237

Query: 188 ILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 238 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 297

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 298 SHEELDEAISRGR 310

[Close]
BLAST of Tan0001487 vs. NCBI nr
Match: XP_023511865.1 (heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP_023511866.1 heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 505.8 bits (1301), Expect = 2.3e-139
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 62
           MFYRG YADGGDGREMGAKRQRIVDQGSSYYGT PGSGFMYNTSPYA VSQPPPFPVVRL
Sbjct: 1   MFYRGPYADGGDGREMGAKRQRIVDQGSSYYGTPPGSGFMYNTSPYACVSQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDV EFFHGLD+VDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVVEFFHGLDVVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYS 182
           RYVE+FRSNRQEYYKAVANEVFDA GGSPRRTAPRSKL D+VKDSAEHTGVLRLRGLPYS
Sbjct: 121 RYVEVFRSNRQEYYKAVANEVFDASGGSPRRTAPRSKLTDEVKDSAEHTGVLRLRGLPYS 180

Query: 183 AGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFKDF LSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKDFILSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSSHEELDEA+SRGR
Sbjct: 241 ELFPSSHEELDEALSRGR 258

[Close]
BLAST of Tan0001487 vs. ExPASy TrEMBL
Match: A0A0A0L205 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.0e-144
Identity = 253/260 (97.31%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]
BLAST of Tan0001487 vs. ExPASy TrEMBL
Match: A0A1S3BMM3 (heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC103491509 PE=4 SV=1)

HSP 1 Score: 521.5 bits (1342), Expect = 2.0e-144
Identity = 253/260 (97.31%), Postives = 258/260 (99.23%), Query Frame = 0 

Query: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVV 60
           MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVV
Sbjct: 1   MNMFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVV 60

Query: 61  RLRGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120
           RLRGLPFDCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM
Sbjct: 61  RLRGLPFDCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNM 120

Query: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLP 180
           GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLP
Sbjct: 121 GRRYVEIFRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLP 180

Query: 181 YSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSR 240
           YSAGKDDILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSR
Sbjct: 181 YSAGKDDILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSR 240

Query: 241 YIELFPSSHEELDEAISRGR 261
           YIELFPSSHEELDEAISRGR
Sbjct: 241 YIELFPSSHEELDEAISRGR 260

[Close]
BLAST of Tan0001487 vs. ExPASy TrEMBL
Match: A0A5A7TH86 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00630 PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 8.5e-140
Identity = 246/253 (97.23%), Postives = 251/253 (99.21%), Query Frame = 0 

Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 58  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 117

Query: 68  DCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 118 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 177

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 178 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 237

Query: 188 ILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 238 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 297

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 298 SHEELDEAISRGR 310

[Close]
BLAST of Tan0001487 vs. ExPASy TrEMBL
Match: A0A5D3BB71 (Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001040 PE=4 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 8.5e-140
Identity = 246/253 (97.23%), Postives = 251/253 (99.21%), Query Frame = 0 

Query: 8   SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPF 67
           SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYV+QPPPFPVVRLRGLPF
Sbjct: 99  SYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVNQPPPFPVVRLRGLPF 158

Query: 68  DCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 127
           DCMETDV EFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI
Sbjct: 159 DCMETDVVEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEI 218

Query: 128 FRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGKDD 187
           FRSNRQEYYKAVANEVFDARGGSPRR+APRSKLND+VKDSAEHTGVLRLRGLPYSAGKDD
Sbjct: 219 FRSNRQEYYKAVANEVFDARGGSPRRSAPRSKLNDEVKDSAEHTGVLRLRGLPYSAGKDD 278

Query: 188 ILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPS 247
           ILDFFK FNLSED+IHLTLNSEGRPSGEAFVEF+NEQDSKAAMSKDRMTLGSRYIELFPS
Sbjct: 279 ILDFFKGFNLSEDSIHLTLNSEGRPSGEAFVEFSNEQDSKAAMSKDRMTLGSRYIELFPS 338

Query: 248 SHEELDEAISRGR 261
           SHEELDEAISRGR
Sbjct: 339 SHEELDEAISRGR 351

[Close]
BLAST of Tan0001487 vs. ExPASy TrEMBL
Match: A0A6J1H2H4 (heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111459832 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.9e-139
Identity = 245/258 (94.96%), Postives = 251/258 (97.29%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQGSSYYGTSPGSGFMYNTSPYAYVSQPPPFPVVRL 62
           MFYRGS+ADGGDGREMGAKRQRIVDQGSSYYGTSPG+GFMYN SPYAYV QPPPFPVVRL
Sbjct: 1   MFYRGSFADGGDGREMGAKRQRIVDQGSSYYGTSPGAGFMYNASPYAYVGQPPPFPVVRL 60

Query: 63  RGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 122
           RGLPFDCMETDVAEFFHGLDIVDI+FVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR
Sbjct: 61  RGLPFDCMETDVAEFFHGLDIVDIIFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGR 120

Query: 123 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYS 182
           RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLND+VKD AEHTG+LRLRGLPYS
Sbjct: 121 RYVEIFRSNRQEYYKAVANEVFDARGGSPRRTAPRSKLNDEVKDFAEHTGILRLRGLPYS 180

Query: 183 AGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 242
           AGKDDILDFFK F LSED IHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI
Sbjct: 181 AGKDDILDFFKGFILSEDVIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYI 240

Query: 243 ELFPSSHEELDEAISRGR 261
           ELFPSS EELDEAI+RGR
Sbjct: 241 ELFPSSQEELDEAIARGR 258

[Close]
BLAST of Tan0001487 vs. TAIR 10
Match: AT3G20890.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-104
Identity = 191/295 (64.75%), Postives = 220/295 (74.58%), Query Frame = 0 

Query: 3   MFYRGSYADGGDGREMGAKRQRIVDQG--SSYYGTSPGSGFMYNTSPYAYVS--QPPPFP 62
           MFYRG Y DG DGREMG KRQR++DQG    +YG  P SGFMYN  PY +V+   PPPFP
Sbjct: 1   MFYRG-YGDGPDGREMGPKRQRMIDQGPPGPFYGPHPSSGFMYN--PYGFVAPPPPPPFP 60

Query: 63  VVRLRGLPFDCMETDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQ 122
            VRLRGLPFDC E DV EFFHGLD+VD+LFVH+N K TGE FCVLGYPLQVDFALQ+NRQ
Sbjct: 61  AVRLRGLPFDCAELDVVEFFHGLDVVDVLFVHRNNKVTGEAFCVLGYPLQVDFALQKNRQ 120

Query: 123 NMGRRYVEIFRSNRQEYYKAVANEVFDAR------------------------------- 182
           NMGRRYVE+FRS +QEYYKA+ANEV ++R                               
Sbjct: 121 NMGRRYVEVFRSTKQEYYKAIANEVAESRVHGMASGGGGGLGGGNGSGGGGGGGGGGGRI 180

Query: 183 --GGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLT 242
             G SPRR   R++ +DD K+  EHTG+LRLRGLP+SAGK+DILDFFKDF LSED +H+T
Sbjct: 181 SGGSSPRRHVQRARSSDDGKEDIEHTGILRLRGLPFSAGKEDILDFFKDFELSEDFVHVT 240

Query: 243 LNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 261
           +N EGRP+GEAFVEF N +DS+AAM KDR TLGSRYIELFPSS EEL+EA+SRGR
Sbjct: 241 VNGEGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFPSSVEELEEALSRGR 292

[Close]
BLAST of Tan0001487 vs. TAIR 10
Match: AT5G66010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.6e-58
Identity = 119/255 (46.67%), Postives = 166/255 (65.10%), Query Frame = 0 

Query: 12  GGDGREMGAKRQRIVDQGSSY--YGTSPGSGFMYNTSPYAYVSQPPPFPVVRLRGLPFDC 71
           G  G E+G+KRQR++ Q + Y   GT P S       P+ Y      FPVVRLRGLPF+C
Sbjct: 10  GSGGYEVGSKRQRMM-QSNPYLAVGTGPTS-----FPPFGYAG---GFPVVRLRGLPFNC 69

Query: 72  METDVAEFFHGLDIVDILFVHKNGKFTGEGFCVLGYPLQVDFALQRNRQNMGRRYVEIFR 131
            + D+ EFF GL+IVD+L V KNGKF+GE F V   P+QV+ ALQR+R NMGRRYVE+FR
Sbjct: 70  ADIDIFEFFAGLNIVDVLLVSKNGKFSGEAFVVFAGPMQVEIALQRDRHNMGRRYVEVFR 129

Query: 132 SNRQEYYKAVANE----VFDARGGSPRRTAPRSKLNDDVKDSAEHTGVLRLRGLPYSAGK 191
            ++Q+YY AVA E     ++ R  SP  T P        K+  E+T VL++RGLPYS  K
Sbjct: 130 CSKQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRFSEKEKLEYTEVLKMRGLPYSVNK 189

Query: 192 DDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFANEQDSKAAMSKDRMTLGSRYIELF 251
             I++FF  + + +  + +    +G+ +GEAFVEF   ++++ AM+KD+M++GSRY+ELF
Sbjct: 190 PQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAKDKMSIGSRYVELF 249

Query: 252 PSSHEELDEAISRGR 261
           P++ EE   A +R R
Sbjct: 250 PTTREEARRAEARSR 254

[Close]
BLAST of Tan0001487 vs. TAIR 10
Match: AT5G66010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.5 bits (358), Expect = 4.7e-34
Identity = 70/158 (44.30%), Postives = 105/158 (66.46%), Query Frame = 0 

Query: 107 LQVDFALQRNRQNMGRRYVEIFRSNRQEYYKAVANE----VFDARGGSPRRTAPRSKLND 166
           +QV+ ALQR+R NMGRRYVE+FR ++Q+YY AVA E     ++ R  SP  T P      
Sbjct: 1   MQVEIALQRDRHNMGRRYVEVFRCSKQDYYNAVAAEEGAYEYEVR-ASPPPTGPSRAKRF 60

Query: 167 DVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGRPSGEAFVEFAN 226
             K+  E+T VL++RGLPYS  K  I++FF  + + +  + +    +G+ +GEAFVEF  
Sbjct: 61  SEKEKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFET 120

Query: 227 EQDSKAAMSKDRMTLGSRYIELFPSSHEELDEAISRGR 261
            ++++ AM+KD+M++GSRY+ELFP++ EE   A +R R
Sbjct: 121 GEEARRAMAKDKMSIGSRYVELFPTTREEARRAEARSR 157

[Close]
BLAST of Tan0001487 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 45.8 bits (107), Expect = 6.0e-05
Identity = 31/105 (29.52%), Postives = 57/105 (54.29%), Query Frame = 0 

Query: 153 RTAPRSK-LNDDVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDFNLSEDTIHLTLNSEGR 212
           + A  SK ++DDV D    TG L +R LPY+A ++++++ F  F    + +HL L+ E +
Sbjct: 278 KVAQESKAVSDDVLD----TGRLFVRNLPYTATEEELMEHFSTFGKISE-VHLVLDKETK 337

Query: 213 PS-GEAFVEFANEQDSKAAMSK-DRMTLGSRYIELFPSSHEELDE 255
            S G A++ +   + +  AM + D  +   R + + P+ H E  +
Sbjct: 338 RSRGIAYILYLIPECAARAMEELDNSSFQGRLLHILPAKHRETSD 377

[Close]
BLAST of Tan0001487 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.3e-04
Identity = 30/90 (33.33%), Postives = 52/90 (57.78%), Query Frame = 0 

Query: 161 NDDVKDSAEHTGVLRLRGLPYSAGKDDILDFFKDF-NLSEDTIHLTLNSEGRP-SGEAFV 220
           +DDV D+    G L + GLPYS  ++++++ F  F ++SE  +HL L+ + R   G AFV
Sbjct: 220 SDDVLDA----GRLFVHGLPYSTTEEELMEHFSKFGDISE--VHLVLDKDTRSCRGMAFV 279

Query: 221 EFANEQDSKAAMSK-DRMTLGSRYIELFPS 248
            +   + +K AM K D++    R + + P+
Sbjct: 280 LYLIPESAKMAMDKLDKLPFQGRTLHILPA 303

The following BLAST results are available for this feature:
BLAST of Tan0001487 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P525971.6e-2636.18Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1... [more]
Q60HC31.6e-2636.18Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRN... [more]
Q8R4X36.1e-2634.76RNA-binding protein 12 OS=Mus musculus OX=10090 GN=Rbm12 PE=1 SV=3[more]
Q9NTZ67.9e-2633.93RNA-binding protein 12 OS=Homo sapiens OX=9606 GN=RBM12 PE=1 SV=1[more]
Q8SQ277.9e-2633.93RNA-binding protein 12 OS=Macaca mulatta OX=9544 GN=RBM12 PE=2 SV=1[more]
BLAST of Tan0001487 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142112.14.0e-14497.31heterogeneous nuclear ribonucleoprotein F [Cucumis sativus] >XP_008449713.1 PRED... [more]
XP_038901811.15.8e-14396.54heterogeneous nuclear ribonucleoprotein F isoform X1 [Benincasa hispida][more]
TYJ96136.11.8e-13997.23heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa][more]
KAA0041416.11.8e-13997.23heterogeneous nuclear ribonucleoprotein H isoform X1 [Cucumis melo var. makuwa][more]
XP_023511865.12.3e-13994.96heterogeneous nuclear ribonucleoprotein H3-like [Cucurbita pepo subsp. pepo] >XP... [more]
BLAST of Tan0001487 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2052.0e-14497.31RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G291930 PE=4 SV... [more]
A0A1S3BMM32.0e-14497.31heterogeneous nuclear ribonucleoprotein F OS=Cucumis melo OX=3656 GN=LOC10349150... [more]
A0A5A7TH868.5e-14097.23Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa... [more]
A0A5D3BB718.5e-14097.23Heterogeneous nuclear ribonucleoprotein H isoform X1 OS=Cucumis melo var. makuwa... [more]
A0A6J1H2H41.9e-13994.96heterogeneous nuclear ribonucleoprotein F-like OS=Cucurbita moschata OX=3662 GN=... [more]
BLAST of Tan0001487 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G20890.11.1e-10464.75RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G66010.11.6e-5846.67RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G66010.24.7e-3444.30RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT4G19610.16.0e-0529.52nucleotide binding;nucleic acid binding;RNA binding [more]
AT5G08695.11.3e-0433.33RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 59..128
e-value: 0.1
score: 15.4
coord: 173..245
e-value: 1.3E-8
score: 44.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 175..242
e-value: 8.0E-10
score: 38.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 172..260
score: 10.240801
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 45..145
e-value: 6.7E-20
score: 72.9
coord: 155..259
e-value: 7.1E-30
score: 105.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..166
NoneNo IPR availablePANTHERPTHR13976:SF76RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 3..260
NoneNo IPR availablePANTHERPTHR13976HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATEDcoord: 3..260
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 173..245
e-value: 5.32957E-30
score: 105.332
NoneNo IPR availableCDDcd12254RRM_hnRNPH_ESRPs_RBM12_likecoord: 59..128
e-value: 3.92566E-21
score: 82.6051
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 49..137
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 163..256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001487.1Tan0001487.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:1990904 ribonucleoprotein complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding