Tan0001482 (gene) Snake gourd v1

Overview
NameTan0001482
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG08: 72934249 .. 72934529 (-)
RNA-Seq ExpressionTan0001482
SyntenyTan0001482
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGACAAACTGGGGTTTTACAGGTGGGTCCCCTGATTGAGAATCAACCAACCGTGCTTGCTAATGGGAATCTCAGCTATTCAAAGGCGTGGCCCTCCAAATTCACAGGTCTAACTCATCCCTTTCTAACTGTTGGCTTCTAAAAATTCATGGCCCAAACATATCACGTAGAGAGATTCTTGTTGTCTAGGCCATTCACTCCTCGAGTAGATGCCATAATTTAGGCCCTTTAATGGTGGTTGTTCCATCCAGTTCCTTCTTTTATGGACATCATTGA

mRNA sequence

ATGTTTGGACAAACTGGGGTTTTACAGGTGGGTCCCCTGATTGAGAATCAACCAACCGTGCTTGCTAATGGGAATCTCAGCTATTCAAAGGCGTGGCCCTCCAAATTCACAGGCCCTTTAATGGTGGTTGTTCCATCCAGTTCCTTCTTTTATGGACATCATTGA

Coding sequence (CDS)

ATGTTTGGACAAACTGGGGTTTTACAGGTGGGTCCCCTGATTGAGAATCAACCAACCGTGCTTGCTAATGGGAATCTCAGCTATTCAAAGGCGTGGCCCTCCAAATTCACAGGCCCTTTAATGGTGGTTGTTCCATCCAGTTCCTTCTTTTATGGACATCATTGA

Protein sequence

MFGQTGVLQVGPLIENQPTVLANGNLSYSKAWPSKFTGPLMVVVPSSSFFYGHH
Homology
[Close]
BLAST of Tan0001482 vs. NCBI nr
Match: KGN58785.1 (hypothetical protein Csa_001275 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 7.6e-13
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1  MFGQTGVLQVGPLIENQPTVLAN-GNLSYSKAWPSKFTG-----------PLMVVVPSSS 55
          MFGQTGVLQVGP+IEN+PT+LAN  +L Y KAWPSKFTG           PLMVVV SSS
Sbjct: 1  MFGQTGVLQVGPVIENRPTMLANWESLGYPKAWPSKFTGHSFLERMPLFRPLMVVVTSSS 60

[Close]
BLAST of Tan0001482 vs. NCBI nr
Match: KAG6596355.1 (putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 24/26 (92.31%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 12  PLIENQPTVLANGNLSYSKAWPSKFT 38
           PLI NQPT+LANGNLSYSKAWPSKFT
Sbjct: 85  PLIVNQPTILANGNLSYSKAWPSKFT 110

[Close]
BLAST of Tan0001482 vs. ExPASy TrEMBL
Match: A0A0A0L9Y4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732430 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 44/66 (66.67%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1  MFGQTGVLQVGPLIENQPTVLAN-GNLSYSKAWPSKFTG-----------PLMVVVPSSS 55
          MFGQTGVLQVGP+IEN+PT+LAN  +L Y KAWPSKFTG           PLMVVV SSS
Sbjct: 1  MFGQTGVLQVGPVIENRPTMLANWESLGYPKAWPSKFTGHSFLERMPLFRPLMVVVTSSS 60

The following BLAST results are available for this feature:
BLAST of Tan0001482 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0001482 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58785.17.6e-1366.67hypothetical protein Csa_001275 [Cucumis sativus][more]
KAG6596355.11.0e-0492.31putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase, partial [Cucu... [more]
BLAST of Tan0001482 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9Y43.7e-1366.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732430 PE=4 SV=1[more]
BLAST of Tan0001482 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001482.1Tan0001482.1mRNA