Tan0001460 (gene) Snake gourd v1

Overview


Name	Tan0001460
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG11: 2549055 .. 2549584 (+)
RNA-Seq Expression	Tan0001460
Synteny	Tan0001460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGAGATTAAATCTGAAGATGATATTGATAGGCCATTGTAACCGCCAACTACTGATTGGCGCTTTAAACCGCAATCCACGCTCGAAATCAAAATACCGGTCAACTCTAAGCTCGCCACGTCACTCCCTAAACCCACCAATCAAATTTGGTTCAAGTCCAAAATTCGACGGTCAAACTAGCGATGACTCTGACTATAATTCGATCCACGAATAAGAATAAGCCACGTTTATTTTATAATCGATTTAGAAGCAGAGGAACATCCCCGAAAAGGAAAAGAAAAGCCGGAGTCTGCAAGAGGAGAATTATTGTGGACCCGATCGAATGAACTCGGAATTGAAACTCAGTGAAGCTTTATTCGAACGAGTTGCAGAATCGGTCCCCTCAAAATACCATCATCACTGCCCCCATTAATCCTCCATGAAGCATTATAGTTTCGAGGATCGCTTTCACATCATGGACTCGTCTCCAAAAGTCCAAACCACATTCTCTTTAAATTCCATTTCGCGCTGAACAAATTCCCCTAA

mRNA sequence

ATGTCGGCGAGATTAAATCTGAAGATGATATTGATAGGCCATTGTAACCGCCAACTACTGATTGGCGCTTTAAACCGCAATCCACGCTCGAAATCAAAATACCGGTCAACTCTAAGCTCGCCACGTCACTCCCTAAACCCACCAATCAAATTTGGTTCAAGTCCAAAATTCGACGGATCGCTTTCACATCATGGACTCGTCTCCAAAAGTCCAAACCACATTCTCTTTAAATTCCATTTCGCGCTGAACAAATTCCCCTAA

Coding sequence (CDS)

ATGTCGGCGAGATTAAATCTGAAGATGATATTGATAGGCCATTGTAACCGCCAACTACTGATTGGCGCTTTAAACCGCAATCCACGCTCGAAATCAAAATACCGGTCAACTCTAAGCTCGCCACGTCACTCCCTAAACCCACCAATCAAATTTGGTTCAAGTCCAAAATTCGACGGATCGCTTTCACATCATGGACTCGTCTCCAAAAGTCCAAACCACATTCTCTTTAAATTCCATTTCGCGCTGAACAAATTCCCCTAA

Protein sequence

MSARLNLKMILIGHCNRQLLIGALNRNPRSKSKYRSTLSSPRHSLNPPIKFGSSPKFDGSLSHHGLVSKSPNHILFKFHFALNKFP

Homology

[Close]

BLAST of Tan0001460 vs. NCBI nr
Match: KGN45826.1 (hypothetical protein Csa_004802 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1  MSARLNLKMILIGHCNRQLLIGALNRNPRSKSKYRSTLSSPRHSLNPPIKFGSSPKFDGS 60
          MSAR N+KM  +GHCNRQ+LIGA NRNPRS+SK+RST S   +SLN PI+F SSP F+  
Sbjct: 1  MSARFNMKM--MGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQ 60

Query: 61 LSHHGLVSKSPNHILFKF 79
           + +     S NH L +F
Sbjct: 61 STKYFDFLASTNHQLPRF 76

[Close]

BLAST of Tan0001460 vs. ExPASy TrEMBL
Match: A0A0A0KDG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014470 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.5e-12
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 0


Query: 1  MSARLNLKMILIGHCNRQLLIGALNRNPRSKSKYRSTLSSPRHSLNPPIKFGSSPKFDGS 60
          MSAR N+KM  +GHCNRQ+LIGA NRNPRS+SK+RST S   +SLN PI+F SSP F+  
Sbjct: 1  MSARFNMKM--MGHCNRQILIGAFNRNPRSESKFRSTPSPHHNSLNQPIRFHSSPNFNCQ 60

Query: 61 LSHHGLVSKSPNHILFKF 79
           + +     S NH L +F
Sbjct: 61 STKYFDFLASTNHQLPRF 76

The following BLAST results are available for this feature:

BLAST of Tan0001460 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45826.1	1.8e-11	56.41	hypothetical protein Csa_004802 [Cucumis sativus]	[more]

BLAST of Tan0001460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDG2	8.5e-12	56.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014470 PE=4 SV=1	[more]

BLAST of Tan0001460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001460.1	Tan0001460.1	mRNA