Tan0001430 (gene) Snake gourd v1

Overview
NameTan0001430
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionLYR motif-containing protein 4
LocationLG05: 75183142 .. 75183986 (-)
RNA-Seq ExpressionTan0001430
SyntenyTan0001430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTCCATCGAGGTTTGAAATTCTCTCGCTCCTTCGTTCTCTTCTTCGCACGTCGCGTCAATTCTCCGATTACAATATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCAAGAAAATCAGATCCTCTCCGACCCTTCATTGATCTCCTCAGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGTATCATGGATGTCGACCTCTGATCTCCATTTTTCTTTTTTATTCCTGCCTCTCATTTTGCTTTCTGGTAGGGTTTTTGGGACTCTATGAATTTGTTGTATTTGAGTTGAACTTTAAATTGGCATTCTGTTGTTATGAACAATGAGCAAAGTTCTTTCCATCGTATTCTGGAGTTTTCTTACGAGCTTAATTCGTCAATCCATGTAAAGCAGGAGTGTGAAACTAATATGCTTGGCTAAAGGAAAATTAGGGATTTTCGTTTTCAAATTTATCAAGCCTGAATCATATTGTGATGGATTTATGAATTTTCTGGGTTTTCAAATTTTTGTGCTTCTTAAGATCATCCATTGTAGAATTCCGTTTGAATACCAAAGATTACCAGACAAGACCCAGTATGAAGGTGAAGAAAGACAATGAGCCAAGTTCCTAATTTGTGATGTGAACAACGGACCCCGGACCTGAATTGATTTTACAAATCTCCGGCAACTTATTTGACTTGTTTATAGCTCATATCAGCTTGAAATTGAGTATGGAAAAAACACTTATTTGCTTAGATTATATTAGGAAAAGCTTTACATTTCAGTTTGACAGGAGCATGTAG

mRNA sequence

ATGGCAACTCCATCGAGGTTTGAAATTCTCTCGCTCCTTCGTTCTCTTCTTCGCACGTCGCGTCAATTCTCCGATTACAATATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCAAGAAAATCAGATCCTCTCCGACCCTTCATTGATCTCCTCAGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGGATTTTCGTTTTCAAATTTATCAAGCCTGAATCATATTGTGATGGATTTATGAATTTTCTGGCTCATATCAGCTTGAAATTGAGTATGGAAAAAACACTTATTTGCTTAGATTATATTAGGAAAAGCTTTACATTTCAGTTTGACAGGAGCATGTAG

Coding sequence (CDS)

ATGGCAACTCCATCGAGGTTTGAAATTCTCTCGCTCCTTCGTTCTCTTCTTCGCACGTCGCGTCAATTCTCCGATTACAATATCAGAGAATACACCAAACGCCGCACCATTGATGCCTTCCAAGAAAATCAGATCCTCTCCGACCCTTCATTGATCTCCTCAGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGCGGCAGGCCCTTGTTTACTCTCTTTACGCGCCTAAGGTCAAGAGGATTTTCGTTTTCAAATTTATCAAGCCTGAATCATATTGTGATGGATTTATGAATTTTCTGGCTCATATCAGCTTGAAATTGAGTATGGAAAAAACACTTATTTGCTTAGATTATATTAGGAAAAGCTTTACATTTCAGTTTGACAGGAGCATGTAG

Protein sequence

MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGKAQLEVAKRQALVYSLYAPKVKRIFVFKFIKPESYCDGFMNFLAHISLKLSMEKTLICLDYIRKSFTFQFDRSM
Homology
BLAST of Tan0001430 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-09
Identity = 35/77 (45.45%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA  SR ++L L R+LLR S++FS YN R Y  RR  DAF+EN+ ++D   I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
          A LEV +RQ  +  +YA
Sbjct: 61 ANLEVIQRQGTIDHMYA 77

BLAST of Tan0001430 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 34/77 (44.16%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA  SR ++LSL R++LR S++FS YN R Y  RR  DAF+EN+ + DP  I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

BLAST of Tan0001430 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.9e-08
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA  SR ++L L R+++R S+ FS YN R Y  RR  DAF+EN+ + DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

BLAST of Tan0001430 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.2e-07
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA  SR ++L L R++LR S++F  YN R Y  RR  DAF+EN+ + DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

BLAST of Tan0001430 vs. ExPASy Swiss-Prot
Match: Q6Q560 (Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ISD11 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 24/73 (32.88%), Postives = 44/73 (60.27%), Query Frame = 0

Query: 4  PSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGKAQL 63
          P+R ++LSL +  ++ + QF++YN REY   +T   F++N    DP ++ + +   K  L
Sbjct: 7  PTRRQVLSLYKEFIKNANQFNNYNFREYFLSKTRTTFRKNMNQQDPKVLMNLFKEAKNDL 66

Query: 64 EVAKRQALVYSLY 77
           V KRQ+++  +Y
Sbjct: 67 GVLKRQSVISQMY 79

BLAST of Tan0001430 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 2.9e-29
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MATPSR EILSL RSLLRT+RQFSDYNIREYTKRR IDAF+EN+ LSDPS ISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRIFVFK 88
          AQLEVAKRQALVYSLYAPKVK I   K
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVK 87

BLAST of Tan0001430 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 8.4e-29
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MATPSR E+LSL RSLLRT+RQF DYNIREYTKRRTIDAF+ENQ LSD S ISSAYAGGK
Sbjct: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          AQLEVAKRQALVYSLYAPKVK I
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSI 83

BLAST of Tan0001430 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-28
Identity = 72/83 (86.75%), Postives = 75/83 (90.36%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA PSR EIL+L RSLLRT+RQF DYNIREYTKRRTIDAF+ENQ LSDPS ISS YAGGK
Sbjct: 1  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          AQLEVAKRQALVYSLYAPKVK I
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSI 83

BLAST of Tan0001430 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 3.0e-26
Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MATPS  EILSL RSLLRT+RQF DYNIREY KRRTID+F+ENQ LSD S ISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          AQLEVAKRQA+VYSLYAPKVK I
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSI 83

BLAST of Tan0001430 vs. NCBI nr
Match: KAF9626534.1 (hypothetical protein IFM89_034468 [Coptis chinensis])

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-24
Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          M+TPSR EIL+L R+LLRT+++FSDYNIREY KRRTID F EN+ LSDPSL+SSA+   K
Sbjct: 1  MSTPSRAEILTLFRALLRTAKKFSDYNIREYAKRRTIDGFHENRNLSDPSLVSSAFTDAK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          +QLEVAKRQA+VYSLYAPKVK I
Sbjct: 61 SQLEVAKRQAIVYSLYAPKVKSI 83

BLAST of Tan0001430 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 75/87 (86.21%), Postives = 78/87 (89.66%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MATPSR EILSL RSLLRT+RQFSDYNIREYTKRR IDAF+EN+ LSDPS ISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRIFVFK 88
          AQLEVAKRQALVYSLYAPKVK I   K
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVK 87

BLAST of Tan0001430 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.4e-26
Identity = 68/83 (81.93%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MATPS  EILSL RSLLRT+RQF DYNIREY KRRTID+F+ENQ LSD S ISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          AQLEVAKRQA+VYSLYAPKVK I
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSI 83

BLAST of Tan0001430 vs. ExPASy TrEMBL
Match: A0A1J6JR59 (Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_39690 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-24
Identity = 60/83 (72.29%), Postives = 76/83 (91.57%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA+PSR E+L+L RSLL+T+RQF DYNIREYTKRRTIDAFQ+N+ LSDPS +++A++ G+
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDAFQQNKDLSDPSKVAAAFSEGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          +QLEVAKRQA+VYSLYAPKVK +
Sbjct: 61 SQLEVAKRQAIVYSLYAPKVKSV 83

BLAST of Tan0001430 vs. ExPASy TrEMBL
Match: A0A5A7UTC8 (LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002810 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA P+R E LSLLRSL+RTSRQF DYNIREY KRR +D F+ N+ LSDPS ISSAYA GK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          AQLEVAKRQ+ +YSLYAPKVK I
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSI 83

BLAST of Tan0001430 vs. ExPASy TrEMBL
Match: A0A1S3BV74 (LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MATPSRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGK 60
          MA P+R E LSLLRSL+RTSRQF DYNIREY KRR +D F+ N+ LSDPS ISSAYA GK
Sbjct: 1  MAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKRI 84
          AQLEVAKRQ+ +YSLYAPKVK I
Sbjct: 61 AQLEVAKRQSAIYSLYAPKVKSI 83

BLAST of Tan0001430 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 87.4 bits (215), Expect = 9.3e-18
Identity = 47/83 (56.63%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 5  SRFEILSLLRSLLRTSRQFSDYNIREYTKRRTIDAFQENQILSDPSLISSAYAGGKAQLE 64
          S  E+LSL R+LLR  RQF DYNIREY+KRRT+D F+ N+ L+DPS ++ AYA  K QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQALVYSLYAPKVKRIFVFK 88
          VA+R   VY  Y PK K I   K
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEVK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B5FZA83.4e-0945.45LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=... [more]
Q9HD341.7e-0844.16LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1[more]
Q8K2152.9e-0841.56LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1[more]
Q0VCG04.2e-0738.96LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1[more]
Q6Q5602.7e-0632.88Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292... [more]
Match NameE-valueIdentityDescription
XP_022137452.12.9e-2986.21LYR motif-containing protein 4 [Momordica charantia][more]
XP_038894896.18.4e-2987.95LYR motif-containing protein 4 [Benincasa hispida][more]
KAG6607477.11.9e-2886.75LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] ... [more]
KGN64034.13.0e-2681.93hypothetical protein Csa_014098 [Cucumis sativus][more]
KAF9626534.12.1e-2474.70hypothetical protein IFM89_034468 [Coptis chinensis][more]
Match NameE-valueIdentityDescription
A0A6J1C8A41.4e-2986.21LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE... [more]
A0A0A0LST71.4e-2681.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1[more]
A0A1J6JR591.0e-2472.29Uncharacterized protein OS=Nicotiana attenuata OX=49451 GN=A4A49_39690 PE=4 SV=1[more]
A0A5A7UTC81.8e-2475.90LYR motif-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A1S3BV741.8e-2475.90LYR motif-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103494022 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G61220.19.3e-1856.63LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
e-value: 2.1E-14
score: 53.3
NoneNo IPR availablePANTHERPTHR47158:SF1OS08G0239000 PROTEINcoord: 1..84
NoneNo IPR availablePANTHERPTHR47158OS08G0239000 PROTEINcoord: 1..84
NoneNo IPR availableCDDcd20264Complex1_LYR_LYRM4coord: 22..76
e-value: 7.62096E-20
score: 75.2485

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001430.1Tan0001430.1mRNA