Tan0001404 (gene) Snake gourd v1

Overview


Name	Tan0001404
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L31
Location	LG04: 83175483 .. 83179949 (+)
RNA-Seq Expression	Tan0001404
Synteny	Tan0001404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATTTTCTCTTGCCCGTTGGGGTTGCTAGGGTTTTATCTTCAGCGGCGGAGAGTTGGAGTTTGCAGGCCGCGACCAAAAATGGCGGATAAATCGGCTAAGGCAAGAAAAAGCGAGGTCGTCACCAGGGAGTACACCGTCAATCTCCATAAGCGCCTGCACGGATGGTAACTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCAGTTTTGCTGATTTAGATCTGGTGTAAAGCATAGACGAAGATGGTTCAACTTAAGTTCAGTTTTCTGGCTCCTTTATTTGGTTCGTCATGTTCTAACTAGTAACTTCAGCCGTAGGTTGTTTCATCGGCATGATTTTGGTCCTCCTGTGACTTCATAGTTTAACTATATGAACCTCATTGTCACGGGTTCGTGTCGTCAGACAAAATGAAGTTCTGCTATGGCATATCTTTGAATTTAATCTTCTGTTCTGTTGATGGGTTGTGTTATTCCAGTGACATATTACTGCGATTGTCGATTTGACTGTGTACTTGAATTGAATTGGTGGCATTGAGGGTTCAATGTTATTTGTTGTTATTATTATCTTGGATAGTTTGGATTGTTGGGAGTGTAATTGCAAGTGAGCAAGTTGTGTTAGTTGTCCTTGAAGAGTTTGGCGGCATGGCACTGTTAATCTTCTTTCTATGATAGGAGTGTTGGTTCATAACGAGCAAGTGACGTGATTCCTTCTGCAAGGGCTTCTATCTACCCTACACGTGGTTCTCATCTCTCATCTTGAAAGGCTTATTTCTTCGATTTGATGGTCCTAAAAAAATATCCATACAAATAGCTCTGTGCTCGTACTAATGTTCATTTGCTTTCTTGAGAGATTATTGGCACTTTTCTGCTGCTTCTGAGCCTGTGTGCATGTTTGTTTGACTTTTCTCTCTCTTTGGTCTATTCAATAGATGAATTATAATTTGGCGCCAGCTTCTGTCTCTGTATTTCATTCCTTGCTTTGTTTCTGATAGGATCCAACTTAATTTCTTATAACAACATGTTGTCGTTAGTAATATTTTGACGTGCCAATTTAACCAGTTTCTAGCTAAGAAGTACTTGAACACTTTTGTTGGGCTAGCCTGTCCATATCTGACATGTTTCAGATACTTGGATATCCCAATAGTTGTTGGACATGCATCAGCCACTTGTTAGCAATAGATATAGGCTAAACACTAGTTGTACGAAGTTAATATTTGTCCAACATTTGTTAGACACGTATCAAACACTCATTAAATATATTGTAACTAAATAGACACATAATAATATAGGACAAAAATAATAAATTTTGAGAGTGAAATACATCAAACTCCTTTTTTTAAGCATATAAATTCATACACTTATTGACTTCAAATTTTCTTCTTGTATAAAAACAATATATATTTTATTTTATTTTTTATTTTAATAAATGTGTCTTGTTGTGTCCATGTTCTAGATTTAAAAAAAATAATGTGTCACTGTATTCGTGTCGTGTCATATCAGTGTCTTGTATATGTATTCATCATTTTTAGGTTTCTAGTTAGAGGTAATAATGACTTGAACCATTCATCGGTTACTTTATTATTATTTATTTTGGAAATTCTCATATTTCAAAAGGAGGAAAACACGCACTTGTCGAAGCTACATTCTCTAATTTACCCACCTATTATTTCTCCATTTTTCTTGCTCCATCCAAAGTCACAAATTCTATTGAGAAGTTGTATATGGATTTTCTATGAAGGGGTGGTATCGATAAAAAGGGAAGCCATCTCCTAAAGTGGTTCACATTACAAGCACCTATTGAGGAAGGTGGATGGGGTCTCTTTGATATACACAAATGTAACATCAATGGGAGGTTTTACATCGAAAAAGAAGCTCTTTGGAGAAGGGTGATTGTGGCAAAATATAGTACTAGCCACTACAATTGCAAGCCTGGCAGTATGTCTCTGAAATTTGCTAAGGGTCCTTGGAAATCTATCCAGAACTTGCAGAATATGGTTTACAACAACATTGAAGTCATTGTTGGGAAAGGAGACAAAACTCGTTTTTGGAAAGATGTTTGGTTGGGAACTCAATCTTTCCTATCAAAATCCCCTTCTCTTTACCTTTTATCTCTAAAGAAAGACCTACCTGTTGCTGATCATTGGAATCAACAGGCTGGATCATGGAATCTATTTTTAAGAAGAAACCTCAACGAATAGAAATTGAAGAATGAGCTTCCTTATCTCATCTATTGTCCTCGTTTATTTTCAAAGACTAAGAGGATAGATGGGTTTGGGCATTGGAAAAGGATGGTCAGTTCTCCACGAGTTCACTAATTCAAAAGCTTGCATCTATAAGCAGTTGTGGAAGGGTCACCATCCACAAAAAAGTTAAGTTCTTTATTTGGGAGCTTGGTCATGCATGTATCAACACTTTTGACATATTACAGAAAAAATCTCCTGGTTTGGCTCTCTCTCCAAATTGCTACCTTCTTTGTTACAGAAACAATGAGTCCCAAATGCACCTTTTCAGCAATTGTAACTTTGCCAATGCTTTTTGGTCCTTCCTTCAACAAGAGTTTGGGTGGTCCCACAGTGTCACGGTCGAACCTCCTACACTGTGCGGCGCCACAATTCTTCCCTCGATCATGACCAACCTTAAGGGGAACTCCAGCCCCATCTCTATGATCGCAACGCTTCTAGCTTCATCGGACCTTAGGCGAGGTTCTTCGTCCTCAACCAAACATCAAGTAAATATGCAGCGAAACATAACTTGATCGTACATGTCGCCGTTCGTGTACATGCACTCGATCTTTCCCATGAGTTGGCTTTATCATGACATTCTCAGATCGTTGGTCGCTAGCGAGCCCTATATCGGAACCTCTAAGCCATGTGAAGGGTGCAATGTCGGCACACCTGTGTCGCCCTACACTGTCCCTTGAAAACCCATTCCAAAGGAAGACGCCCAAGACACTCGTCTTCTAACGCTCGTCCACGCCATGACACACTAACATGCCACGGGGTGACTCACTTAGACCCTCGAGCCCAGGGGTAGTGGAGAGTCGACACCATGCTACCCTATAGTATATTATGAGGATAATTATGTCTGACACCCTTGCACGCCAATTTGGCGAGGGATCATACACCCATACATTGACCCCTTTGACAACACGGTTGTCCCCAATCTTACTTGCCCTCAACTTCGTATTCAAGCCCACCTATATTGGTGTGTTAGATGATGCACCGTCCTCCTCGGTCGCACCATGGCACTTGTGGGGTCACAACTTACACTCGACTAGTATGGTTGTGACACACAACATGGCCTGGGGATATCTATACATTGCTAGATATGCTAATCAATGGTCACCCGTTCAAAAAGAAAAAGAAGACTCTTTGGATCAATTTCATTTATGCTTTCTATGGAATTTATGGCTTGAGAGAAATGCCTGAGTTTTCAAGATAAGCACCATAACATTCAAACCTTCATAGTCAACTTCCTATCATGCTTTAGTTGGTGTATTTTATCTCTCCCCTTTTGTAATTATGATTTAACAACCCTTTTATCTCATTGAAGATCTTTTTTGTGACTATCACCTAGGACTTCTTTTGTATTTATTTTACTCATCAATGAAATGGTTTCATTTTTTCCTATAAAAAAAATTATTATTTACTGGAAAAATAGGGTTATTGAAAAGATATCTTGTTCATGATGGTGGTATTCTCGTTTTTTGTTATGACTGGCCCAGCTTCAAACTAGGTTGTTTTTTGGAATTTTGTTGTCTTGGAATTAGTCTTTAATTCCAATTCATTGTATTTCCCATCTTGTTATGTACCTTTTGATTTCTTGAATGCTTTTTGTGACTTCTTATTCTCGATACCCTTATGCAGCACCTTCAAGAAGAAAGCACCGAAGGCTATCAAGGAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGTGGAATTAGGAGTGTGCCAAAGAGGGTTCGTGTCCGCATTGCACGAAAGCGTAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTATCTGCAGAGGGATTGAAGGGCTTGGGTACCATGGTCATTGATGAAGAGGACTAAATTAGCTTGCCAAAACTAGGTCAGTTTTAGGTATATTATTGTCTCACAGATCCATTTTTGACTTGAGGTTTTTTGCAACTTTAGTGAAGAAATTGTTGTTTTCAACAATTGATGAGTTTTGTATTAAAGGTTATGTGATTTATGCTTTCAGTCATTTCATGCTTTATAACTTATTATTGATTCTGACCTAGACCAAATTTGATATAGAAAAGTGATAACTGATGATGAATTATGATCATCTTACATCAAAATTTTAGGTGCACTTCCATTGATTGGTGGTCTTATAAATTGTCACCTTTATAAATT

mRNA sequence

CAGATTTTCTCTTGCCCGTTGGGGTTGCTAGGGTTTTATCTTCAGCGGCGGAGAGTTGGAGTTTGCAGGCCGCGACCAAAAATGGCGGATAAATCGGCTAAGGCAAGAAAAAGCGAGGTCGTCACCAGGGAGTACACCGTCAATCTCCATAAGCGCCTGCACGGATGCACCTTCAAGAAGAAAGCACCGAAGGCTATCAAGGAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGTGGAATTAGGAGTGTGCCAAAGAGGGTTCGTGTCCGCATTGCACGAAAGCGTAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTATCTGCAGAGGGATTGAAGGGCTTGGGTACCATGGTCATTGATGAAGAGGACTAAATTAGCTTGCCAAAACTAGGTCAGTTTTAGGTATATTATTGTCTCACAGATCCATTTTTGACTTGAGGTTTTTTGCAACTTTAGTGAAGAAATTGTTGTTTTCAACAATTGATGAGTTTTGTATTAAAGGTTATGTGATTTATGCTTTCAGTCATTTCATGCTTTATAACTTATTATTGATTCTGACCTAGACCAAATTTGATATAGAAAAGTGATAACTGATGATGAATTATGATCATCTTACATCAAAATTTTAGGTGCACTTCCATTGATTGGTGGTCTTATAAATTGTCACCTTTATAAATT

Coding sequence (CDS)

ATGGCGGATAAATCGGCTAAGGCAAGAAAAAGCGAGGTCGTCACCAGGGAGTACACCGTCAATCTCCATAAGCGCCTGCACGGATGCACCTTCAAGAAGAAAGCACCGAAGGCTATCAAGGAACTCAGAAAGTTTGCTCAGAATGCTATGGGTACCACTGATGTTAGAGTGGACGTGAAACTTAACAAGCATATATGGAGTCGTGGAATTAGGAGTGTGCCAAAGAGGGTTCGTGTCCGCATTGCACGAAAGCGTAACGACGAGGAAGATGCCAAGGAGGAATTCTATTCCTTAGTAACTGTCGCAGAGGTATCTGCAGAGGGATTGAAGGGCTTGGGTACCATGGTCATTGATGAAGAGGACTAA

Protein sequence

MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED

Homology

[Close]

BLAST of Tan0001404 vs. ExPASy Swiss-Prot
Match: Q9M573 (60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.5e-53
Identity = 103/121 (85.12%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MADK +K RK EVV+REYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKGSKPRKEEVVSREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKHIWSRGIRSVP+R+RVRIARKRND+EDAKEE YSLVTVAE+   GLKGLGT VIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEE 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Tan0001404 vs. ExPASy Swiss-Prot
Match: P46290 (60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-49
Identity = 99/121 (81.82%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           M+DK+ K RK EVVTREYT+NLHKRLH CTFKKKAP AIKE+RKFAQ AMGT DVRVDVK
Sbjct: 1   MSDKT-KGRKEEVVTREYTINLHKRLHSCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNK IWSRGIRSVP+RVRVRIARKRND+EDAKEE YSLVTVAE+ A+GLKGLGT +I++E
Sbjct: 61  LNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDE 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of Tan0001404 vs. ExPASy Swiss-Prot
Match: P51420 (60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2)

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-47
Identity = 91/115 (79.13%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 7   KARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
           K RK EV+TREYT+NLH+RLH CTFKKKAPKAIKE+RKFA+ AMGT DVRVDVKLNK IW
Sbjct: 5   KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIW 64

Query: 67  SRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
           S+GIR  P+R+RVR+ARKRND+EDAKEEF+SLVTVAE+ AEGL GLGT VI+EED
Sbjct: 65  SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of Tan0001404 vs. ExPASy Swiss-Prot
Match: Q9MAV7 (60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.2e-47
Identity = 94/118 (79.66%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 4   KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNK 63
           +  K RK EVVTREYT+NLHKRLHGCTFKKKAP AIKE+RKFAQ AMGT DVRVDVKLNK
Sbjct: 3   EKTKGRKEEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTKDVRVDVKLNK 62

Query: 64  HIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
            IWSRGIRSVP+RVRVRIARKRND+EDAKEE YSLVTVA++ A  LKGLG  +I+E+D
Sbjct: 63  QIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120

[Close]

BLAST of Tan0001404 vs. ExPASy Swiss-Prot
Match: O65071 (60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.9e-47
Identity = 90/118 (76.27%), Postives = 107/118 (90.68%), Query Frame = 0


Query: 4   KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNK 63
           +  K+R++EV TREYT+NLH+RLHGCTFKK APKA+KE+RKFAQ AMGTTDVR+DVKLNK
Sbjct: 3   EKGKSRRNEVATREYTINLHRRLHGCTFKKMAPKAVKEIRKFAQKAMGTTDVRLDVKLNK 62

Query: 64  HIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
            +WSRGIRSVP+R+RVRI+RKRNDEEDAK+E YS+VTVAEV  EGL GLGT +I+EED
Sbjct: 63  AVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120

[Close]

BLAST of Tan0001404 vs. NCBI nr
Match: XP_038903425.1 (60S ribosomal protein L31 [Benincasa hispida])

HSP 1 Score: 224.6 bits (571), Expect = 4.7e-55
Identity = 115/121 (95.04%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNK+IWSRGIRSVP+RVRVRIARKRNDEEDAKEEFYSL+TVAEV AEGLKGLGT VIDEE
Sbjct: 61  LNKNIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLITVAEVPAEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. NCBI nr
Match: XP_022152572.1 (60S ribosomal protein L31 [Momordica charantia])

HSP 1 Score: 224.2 bits (570), Expect = 6.2e-55
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAP AIKELRKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKHIWSRGIRSVP+RVRVRIA+KRNDEEDAKEEFYSLVTVAEV AEGLKGLGT VIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRVRVRIAQKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. NCBI nr
Match: XP_023525745.1 (60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 224.2 bits (570), Expect = 6.2e-55
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKHIWSRGIRSVP+RVRVRIARKRNDEEDAKEEFYSLVTVAEV AEG KGL T VIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVAEVPAEGFKGLDTKVIDEE 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Tan0001404 vs. NCBI nr
Match: XP_031401093.1 (60S ribosomal protein L31 [Punica granatum] >OWM78362.1 hypothetical protein CDL15_Pgr016086 [Punica granatum] >PKI31655.1 hypothetical protein CRG98_047939 [Punica granatum])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MAD+ +K RK EVVTREYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MADRKSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKH+WSRGIRSVP+RVRVR+ARKRNDEEDAKEEFYSLVTVAE+  EGLKGLGT VIDEE
Sbjct: 61  LNKHVWSRGIRSVPRRVRVRVARKRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. NCBI nr
Match: XP_015888290.1 (60S ribosomal protein L31 [Ziziphus jujuba])

HSP 1 Score: 214.9 bits (546), Expect = 3.8e-52
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           M DK++K RK EVVTREYTVNLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MVDKTSKGRKEEVVTREYTVNLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKH+WSRGIRSVP+RVRVRIARKRNDEED KEEFYSLVTVAEV  EGLKGLGT VIDEE
Sbjct: 61  LNKHLWSRGIRSVPRRVRVRIARKRNDEEDNKEEFYSLVTVAEVPPEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. ExPASy TrEMBL
Match: A0A6J1DGM1 (60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111020269 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.0e-55
Identity = 115/121 (95.04%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAP AIKELRKFAQ AMGTTDVRVDVK
Sbjct: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPNAIKELRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKHIWSRGIRSVP+RVRVRIA+KRNDEEDAKEEFYSLVTVAEV AEGLKGLGT VIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRVRVRIAQKRNDEEDAKEEFYSLVTVAEVPAEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. ExPASy TrEMBL
Match: A0A218X1Y2 (60S ribosomal protein L31 OS=Punica granatum OX=22663 GN=LOC116211037 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.3e-53
Identity = 106/121 (87.60%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           MAD+ +K RK EVVTREYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MADRKSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKH+WSRGIRSVP+RVRVR+ARKRNDEEDAKEEFYSLVTVAE+  EGLKGLGT VIDEE
Sbjct: 61  LNKHVWSRGIRSVPRRVRVRVARKRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. ExPASy TrEMBL
Match: A0A6P4A0Q9 (60S ribosomal protein L31 OS=Ziziphus jujuba OX=326968 GN=LOC107423246 PE=3 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 108/121 (89.26%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           M DK++K RK EVVTREYTVNLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MVDKTSKGRKEEVVTREYTVNLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKH+WSRGIRSVP+RVRVRIARKRNDEED KEEFYSLVTVAEV  EGLKGLGT VIDEE
Sbjct: 61  LNKHLWSRGIRSVPRRVRVRIARKRNDEEDNKEEFYSLVTVAEVPPEGLKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. ExPASy TrEMBL
Match: I3NMM3 (60S ribosomal protein L31A OS=Hevea brasiliensis OX=3981 GN=RPL31A PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 107/121 (88.43%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           M +K+AK RK EVVTREYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MVEKAAKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKHIWSRGIRSVP+RVRVRIARKRNDEEDAKEEFYSLVTV EV +EG KGLGT VIDEE
Sbjct: 61  LNKHIWSRGIRSVPRRVRVRIARKRNDEEDAKEEFYSLVTVTEVPSEGFKGLGTKVIDEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. ExPASy TrEMBL
Match: A0A7N2LCX9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.3e-52
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 0


Query: 1   MADKSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVK 60
           M DK +K RK EVVTREYT+NLHKRLHGCTFKKKAPKAIKE+RKFAQ AMGTTDVRVDVK
Sbjct: 1   MVDKGSKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVK 60

Query: 61  LNKHIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEE 120
           LNKH+WSRGIRSVP+RVRVRIARKRNDEEDAKEEF+SLVTVAE+  EGLKGLGT VI+EE
Sbjct: 61  LNKHVWSRGIRSVPRRVRVRIARKRNDEEDAKEEFFSLVTVAEIPPEGLKGLGTKVIEEE 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of Tan0001404 vs. TAIR 10
Match: AT5G56710.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 189.5 bits (480), Expect = 1.6e-48
Identity = 91/115 (79.13%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 7   KARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
           K RK EV+TREYT+NLH+RLH CTFKKKAPKAIKE+RKFA+ AMGT DVRVDVKLNK IW
Sbjct: 5   KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIW 64

Query: 67  SRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
           S+GIR  P+R+RVR+ARKRND+EDAKEEF+SLVTVAE+ AEGL GLGT VI+EED
Sbjct: 65  SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119

[Close]

BLAST of Tan0001404 vs. TAIR 10
Match: AT4G26230.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 188.3 bits (477), Expect = 3.5e-48
Identity = 90/115 (78.26%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 7   KARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
           K RK EVVTREYT+NLH+RLH CTFKKKAPKAIKE+RKFA+  MGT DVRVDVKLNK IW
Sbjct: 5   KGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNKQIW 64

Query: 67  SRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
           S+GIR  P+R+RVR+ARKRND+EDAKEEF+SLVTVAE+ AEGL GLGT +I+EED
Sbjct: 65  SKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119

[Close]

BLAST of Tan0001404 vs. TAIR 10
Match: AT2G19740.1 (Ribosomal protein L31e family protein )

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-47
Identity = 90/118 (76.27%), Postives = 103/118 (87.29%), Query Frame = 0


Query: 4   KSAKARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNK 63
           +  K RK EVVTREYT+NLH+RLH CTFKKKAP AIKE+RKFA  AMGT DVRVDVKLNK
Sbjct: 2   EKGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNK 61

Query: 64  HIWSRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
            IWS+GIR  P+R+RVR+ARKRND+EDAKEEF+SLVTVAE+ AEGL GLGT VI+EE+
Sbjct: 62  QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119

[Close]

BLAST of Tan0001404 vs. TAIR 10
Match: AT5G56710.2 (Ribosomal protein L31e family protein )

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-27
Identity = 65/115 (56.52%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 7   KARKSEVVTREYTVNLHKRLHGCTFKKKAPKAIKELRKFAQNAMGTTDVRVDVKLNKHIW 66
           K RK EV+TREYT+NLH+RLH CTFKKKAPKAIKE+RKFA+ AMGT DVRVD        
Sbjct: 5   KGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVD-------- 64

Query: 67  SRGIRSVPKRVRVRIARKRNDEEDAKEEFYSLVTVAEVSAEGLKGLGTMVIDEED 122
                                     EEF+SLVTVAE+ AEGL GLGT VI+EED
Sbjct: 65  --------------------------EEFFSLVTVAEIPAEGLSGLGTKVIEEED 85

The following BLAST results are available for this feature:

BLAST of Tan0001404 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M573	3.5e-53	85.12	60S ribosomal protein L31 OS=Perilla frutescens OX=48386 GN=RPL31 PE=2 SV=1	[more]
P46290	1.8e-49	81.82	60S ribosomal protein L31 OS=Nicotiana glutinosa OX=35889 GN=RPL31 PE=2 SV=1	[more]
P51420	2.2e-47	79.13	60S ribosomal protein L31-3 OS=Arabidopsis thaliana OX=3702 GN=RPL31C PE=3 SV=2	[more]
Q9MAV7	2.2e-47	79.66	60S ribosomal protein L31 OS=Panax ginseng OX=4054 GN=RPL31 PE=2 SV=1	[more]
O65071	2.9e-47	76.27	60S ribosomal protein L31 OS=Picea mariana OX=3335 GN=RPL31 PE=2 SV=1	[more]

BLAST of Tan0001404 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903425.1	4.7e-55	95.04	60S ribosomal protein L31 [Benincasa hispida]	[more]
XP_022152572.1	6.2e-55	95.04	60S ribosomal protein L31 [Momordica charantia]	[more]
XP_023525745.1	6.2e-55	95.04	60S ribosomal protein L31-like [Cucurbita pepo subsp. pepo]	[more]
XP_031401093.1	1.3e-52	87.60	60S ribosomal protein L31 [Punica granatum] >OWM78362.1 hypothetical protein CDL...	[more]
XP_015888290.1	3.8e-52	89.26	60S ribosomal protein L31 [Ziziphus jujuba]	[more]

BLAST of Tan0001404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGM1	3.0e-55	95.04	60S ribosomal protein L31 OS=Momordica charantia OX=3673 GN=LOC111020269 PE=3 SV...	[more]
A0A218X1Y2	6.3e-53	87.60	60S ribosomal protein L31 OS=Punica granatum OX=22663 GN=LOC116211037 PE=3 SV=1	[more]
A0A6P4A0Q9	1.8e-52	89.26	60S ribosomal protein L31 OS=Ziziphus jujuba OX=326968 GN=LOC107423246 PE=3 SV=1	[more]
I3NMM3	1.8e-52	88.43	60S ribosomal protein L31A OS=Hevea brasiliensis OX=3981 GN=RPL31A PE=2 SV=1	[more]
A0A7N2LCX9	5.3e-52	86.78	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]

BLAST of Tan0001404 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56710.1	1.6e-48	79.13	Ribosomal protein L31e family protein	[more]
AT4G26230.1	3.5e-48	78.26	Ribosomal protein L31e family protein	[more]
AT2G19740.1	2.3e-47	76.27	Ribosomal protein L31e family protein	[more]
AT5G56710.2	4.5e-27	56.52	Ribosomal protein L31e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000054	Ribosomal protein L31e	SMART	SM01380	Ribosomal_L31e_2	coord: 11..94 e-value: 1.2E-45 score: 167.6
IPR000054	Ribosomal protein L31e	PFAM	PF01198	Ribosomal_L31e	coord: 12..93 e-value: 2.6E-40 score: 136.5
IPR000054	Ribosomal protein L31e	PANTHER	PTHR10956	60S RIBOSOMAL PROTEIN L31	coord: 1..121
IPR000054	Ribosomal protein L31e	CDD	cd00463	Ribosomal_L31e	coord: 10..93 e-value: 2.30271E-32 score: 107.27
IPR023621	Ribosomal protein L31e domain superfamily	GENE3D	3.10.440.10		coord: 8..121 e-value: 1.6E-47 score: 162.1
IPR023621	Ribosomal protein L31e domain superfamily	SUPERFAMILY	54575	Ribosomal protein L31e	coord: 12..93
None	No IPR available	PANTHER	PTHR10956:SF40	60S RIBOSOMAL PROTEIN L31	coord: 1..121
IPR020052	Ribosomal protein L31e, conserved site	PROSITE	PS01144	RIBOSOMAL_L31E	coord: 55..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001404.1	Tan0001404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome