Tan0001353 (gene) Snake gourd v1

Overview
NameTan0001353
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 98250172 .. 98251097 (+)
RNA-Seq ExpressionTan0001353
SyntenyTan0001353
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATTCTTTCATTTTGAAATTTGCTGCTGAGGCAACTTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTCATCATACTCATCATTCTCTTCTCCAATTTTCATCAGCAAAATGATGATGATTATGATGTCCCACTTTCAATTGTCATTCACAATAACACAAATACACAACAAAACTTCATGCTTCACAAAAATTTCACTGTTCAACTAACAGAGACTCTAAATGAACCAGACAGATGCGTGAGTTTCAACTGCAGTGATAATAATGTTGAAGAGAGTGATGAAGATCATGAGGAAGAGGATGAGGACAAGGATGATTTCAAACGAAGAGTGGAAGACTTTATTGAAAAGGTTAATACGGGGTGGAGACAAGAACGCCAAACAACCTCGAGATGATCGGTTGAATCGAATTTCATTTGTTCCAAGCATACTCCACTCCCTCCTAGCCAAACAAGAATCTCCATCACTTTTACCTTTGGGTTAAGTTCTACCTCTCTCTCTCTGTTTTGATATCAGATTTTTGAAGAAGATATGGACAAGGGCACAAGAATCAAGTAGATTCAATCGGAACAATTTTACAAAGATGTAATTCTCTAGTGTTCGATTCAAGGACGCAAAGATGTAACTTTATGATTTCATTAGAAAGCGAATCAAATTGCTAATATTGAAACAAAGCGTTAGTATTCAATCCAAATTTTTCTTCCAACCTATAATACTTCTATTCATTTAAACATAAATTCATTCATCACATATTGATGTTGCATAAATAGGGTCGATTGACTGCGATCTCGACTTGGCTACATATTTTCCTACGTGCAATTTTGTTTACTAGGGGTGTCAAACAACATCAAATTCATTATTTCCAAATAAGAACACTTCAGGGCAATGAATCAAATCCTCTTGCAGATCTTAGTAGTTAA

mRNA sequence

ATGGTTGATTCTTTCATTTTGAAATTTGCTGCTGAGGCAACTTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTCATCATACTCATCATTCTCTTCTCCAATTTTCATCAGCAAAATGATGATGATTATGATGTCCCACTTTCAATTGTCATTCACAATAACACAAATACACAACAAAACTTCATGCTTCACAAAAATTTCACTGTTCAACTAACAGAGACTCTAAATGAACCAGACAGATGCGTGAGTTTCAACTGCAGTGATAATAATGTTGAAGAGAGTGATGAAGATCATGAGGAAGAGGATGAGGACAAGGATGATTTCAAACGAAGAGTGGAAGACTTTATTGAAAAGGGTCGATTGACTGCGATCTCGACTTGGCTACATATTTTCCTACGTGCAATTTTGTTTACTAGGGGTGTCAAACAACATCAAATTCATTATTTCCAAATAAGAACACTTCAGGGCAATGAATCAAATCCTCTTGCAGATCTTAGTAGTTAA

Coding sequence (CDS)

ATGGTTGATTCTTTCATTTTGAAATTTGCTGCTGAGGCAACTTCCAGTACTCTGTTCATCTTCTGCTTCTTCAATTTCATCATACTCATCATTCTCTTCTCCAATTTTCATCAGCAAAATGATGATGATTATGATGTCCCACTTTCAATTGTCATTCACAATAACACAAATACACAACAAAACTTCATGCTTCACAAAAATTTCACTGTTCAACTAACAGAGACTCTAAATGAACCAGACAGATGCGTGAGTTTCAACTGCAGTGATAATAATGTTGAAGAGAGTGATGAAGATCATGAGGAAGAGGATGAGGACAAGGATGATTTCAAACGAAGAGTGGAAGACTTTATTGAAAAGGGTCGATTGACTGCGATCTCGACTTGGCTACATATTTTCCTACGTGCAATTTTGTTTACTAGGGGTGTCAAACAACATCAAATTCATTATTTCCAAATAAGAACACTTCAGGGCAATGAATCAAATCCTCTTGCAGATCTTAGTAGTTAA

Protein sequence

MVDSFILKFAAEATSSTLFIFCFFNFIILIILFSNFHQQNDDDYDVPLSIVIHNNTNTQQNFMLHKNFTVQLTETLNEPDRCVSFNCSDNNVEESDEDHEEEDEDKDDFKRRVEDFIEKGRLTAISTWLHIFLRAILFTRGVKQHQIHYFQIRTLQGNESNPLADLSS
Homology
BLAST of Tan0001353 vs. NCBI nr
Match: XP_031742158.1 (probable ATP-dependent RNA helicase ddx52 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-22
Identity = 74/132 (56.06%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MVDSFILKFAAEATSSTLFIFCFFNFIILIILF------SNFHQQNDDDYDVPLSIVIHN 60
           M DS IL+ AA+ATSSTLFIFCFFN IIL+I F      S+F QQNDD+ D+PLSIVIH+
Sbjct: 1   MADS-ILELAADATSSTLFIFCFFNLIILVIFFTSRPATSSFDQQNDDN-DMPLSIVIHS 60

Query: 61  NTN-TQQNFMLHKNFTV---QLTETLNEPDRCVSFNCS---DNNVEESDEDHEEEDEDKD 120
            TN T+QN ML K+  V   ++ E+ NE +RCV+FNC+   + + +++++D+E+EDED+D
Sbjct: 61  KTNTTEQNSMLQKDPIVGVCEVIESQNETERCVNFNCNVDVEQSDDDNEDDYEDEDEDED 120

BLAST of Tan0001353 vs. NCBI nr
Match: KAG6605668.1 (hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.8 bits (281), Expect = 2.8e-21
Identity = 79/129 (61.24%), Postives = 92/129 (71.32%), Query Frame = 0

Query: 1   MVDSFILKFAAEATSSTLFIFCFFNFIILIILF-------SNFHQQNDDDYDVPLSIVIH 60
           M DS IL+ AAEA SSTLFIFC FN I+LIILF       S+ HQ +D   DVPLSIVIH
Sbjct: 1   MADS-ILELAAEAASSTLFIFCIFNLILLIILFTSRPVSSSSDHQNHD---DVPLSIVIH 60

Query: 61  NNTNTQQNFMLHKNFTVQ---LTETLNEPDRCVSFNCSDNNVEESDEDHEEEDEDKDDFK 120
           +NTN QQNFML KN  V    +TETLNEPD   S   S ++ E+ DED E+E ED++DFK
Sbjct: 61  SNTNAQQNFMLQKNAIVDVCAVTETLNEPDFSDSVEGSGDDHEDEDED-EDEVEDEEDFK 120

BLAST of Tan0001353 vs. NCBI nr
Match: XP_024928006.1 (uncharacterized protein LOC112491100 [Ziziphus jujuba])

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 0

Query: 12  EATSSTLFIFCFFNFIILIIL-----FSNFHQQNDDDYDVPLSIVIHNNTNTQQNFMLHK 71
           +  S++LF+FCF N II+IIL      +NF Q+N     +PLS+    +T+ +Q  +  K
Sbjct: 11  QTASNSLFVFCFCNLIIVIILVGSKSITNFDQEN----RIPLSVATKRSTDDRQGTIDAK 70

Query: 72  NFTVQLTETLNEPDRCVSFNCSDNNVEESDEDHEEEDEDKDDFKRRVEDFIEK 120
               ++ E  N      + N   N   E++ D EEE+ED D+ +RRVE+FIEK
Sbjct: 71  QVHEEVDEVSNAKKSLGNHNVGSN---EAENDEEEENEDDDELRRRVEEFIEK 116

BLAST of Tan0001353 vs. ExPASy TrEMBL
Match: A0A6P6G1P3 (uncharacterized protein LOC112491100 OS=Ziziphus jujuba OX=326968 GN=LOC112491100 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = 0

Query: 12  EATSSTLFIFCFFNFIILIIL-----FSNFHQQNDDDYDVPLSIVIHNNTNTQQNFMLHK 71
           +  S++LF+FCF N II+IIL      +NF Q+N     +PLS+    +T+ +Q  +  K
Sbjct: 11  QTASNSLFVFCFCNLIIVIILVGSKSITNFDQEN----RIPLSVATKRSTDDRQGTIDAK 70

Query: 72  NFTVQLTETLNEPDRCVSFNCSDNNVEESDEDHEEEDEDKDDFKRRVEDFIEK 120
               ++ E  N      + N   N   E++ D EEE+ED D+ +RRVE+FIEK
Sbjct: 71  QVHEEVDEVSNAKKSLGNHNVGSN---EAENDEEEENEDDDELRRRVEEFIEK 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031742158.13.3e-2256.06probable ATP-dependent RNA helicase ddx52 [Cucumis sativus][more]
KAG6605668.12.8e-2161.24hypothetical protein SDJN03_02985, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_024928006.14.1e-0437.17uncharacterized protein LOC112491100 [Ziziphus jujuba][more]
Match NameE-valueIdentityDescription
A0A6P6G1P32.0e-0437.17uncharacterized protein LOC112491100 OS=Ziziphus jujuba OX=326968 GN=LOC11249110... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 92..119
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001353.1Tan0001353.1mRNA