Tan0001315 (gene) Snake gourd v1

Overview


Name	Tan0001315
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	RNA-directed RNA polymerase
Location	LG10: 7025534 .. 7026087 (-)
RNA-Seq Expression	Tan0001315
Synteny	Tan0001315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAACAAAAACATTCCCTTTGCTCTTTCTTTGTATTATTCTCTCTTCATGAGCTGAGGCATTTTCCCTCCATTTCTCTTTTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGCCGAAGAAACGTAAGTTACTTAATTCCCTTTTTCGAACTCGATTTCGACACTTTCGTTCTTCGCTTTTTCTGCAATGCCACCATTTTCAGATTTTGAACAGCCATTTCCTGGTTTTTCACTTGCAAATTATGTAGAAATGAATCTTTTTTTCAACACCATTTGAAGTTCAAGTTCCCTTTTTTTGTCATTTTTTTGGGGGTTATTTTAATGCAGGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTACATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAATACAATGAAGATTTCAACCTCCTAAACACACAGTTTCCCCACCAATGTACATAAAATATTTATAATGCTTTTACATACTGAAGG

mRNA sequence

CAAAAACAAAAACATTCCCTTTGCTCTTTCTTTGTATTATTCTCTCTTCATGAGCTGAGGCATTTTCCCTCCATTTCTCTTTTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTACATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAATACAATGAAGATTTCAACCTCCTAAACACACAGTTTCCCCACCAATGTACATAAAATATTTATAATGCTTTTACATACTGAAGG

Coding sequence (CDS)

ATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGACTCCATTCTTCGCCGAAGAAACGAAGAGGGATATATATTCTGTATGAGGATGTGAAATCCTGTCCCTGTGAAGATGTACATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAATACAATGAAGATTTCAACCTCCTAA

Protein sequence

MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPNTMKISTS

Homology

[Close]

BLAST of Tan0001315 vs. NCBI nr
Match: KGN56989.1 (hypothetical protein Csa_010650 [Cucumis sativus])

HSP 1 Score: 131.3 bits (329), Expect = 3.0e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP 59

[Close]

BLAST of Tan0001315 vs. NCBI nr
Match: KAG6597448.1 (hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 7.5e-26
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN 60
          MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP    
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPEKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPY-NK 60

Query: 61 TMKISTS 68
          TMK+S S
Sbjct: 61 TMKLSAS 66

[Close]

BLAST of Tan0001315 vs. NCBI nr
Match: PHT38775.1 (hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical protein T459_08075 [Capsicum annuum])

HSP 1 Score: 120.2 bits (300), Expect = 7.0e-24
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

[Close]

BLAST of Tan0001315 vs. NCBI nr
Match: RXH80416.1 (hypothetical protein DVH24_041563 [Malus domestica])

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN 60
          MGWL SLFSPLKK+WFRLHS PKKRRGIYILYEDVKSCPCEDVHVLWSILVE+HT   P+
Sbjct: 1  MGWLHSLFSPLKKMWFRLHSGPKKRRGIYILYEDVKSCPCEDVHVLWSILVEAHTHTTPS 60

[Close]

BLAST of Tan0001315 vs. NCBI nr
Match: ONI26253.1 (hypothetical protein PRUPE_1G012900 [Prunus persica] >VVA20892.1 PREDICTED: unnamed product [Prunus dulcis])

HSP 1 Score: 117.5 bits (293), Expect = 4.5e-23
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPP 60
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP LP 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 61 NTM 63
           +M
Sbjct: 61 KSM 63

[Close]

BLAST of Tan0001315 vs. ExPASy TrEMBL
Match: A0A0A0L7K5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.5e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP 60
          MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPP 59

[Close]

BLAST of Tan0001315 vs. ExPASy TrEMBL
Match: A0A2G2W0L8 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_22348 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

[Close]

BLAST of Tan0001315 vs. ExPASy TrEMBL
Match: A0A2G2ZVG2 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPP 60
          MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP
Sbjct: 1  MGWLQSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPCEDVQVLWSILVESHPHPLPP 60

[Close]

BLAST of Tan0001315 vs. ExPASy TrEMBL
Match: A0A498IAF8 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041563 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPN 60
          MGWL SLFSPLKK+WFRLHS PKKRRGIYILYEDVKSCPCEDVHVLWSILVE+HT   P+
Sbjct: 1  MGWLHSLFSPLKKMWFRLHSGPKKRRGIYILYEDVKSCPCEDVHVLWSILVEAHTHTTPS 60

[Close]

BLAST of Tan0001315 vs. ExPASy TrEMBL
Match: M5XVP0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G012900 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 55/63 (87.30%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPP 60
          MGWL SLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCP EDVHVLWSILVE+HTP LP 
Sbjct: 1  MGWLHSLFSPLKKLWFRLHSAPKKRRGIYILYEDVKSCPYEDVHVLWSILVEAHTPSLPS 60

Query: 61 NTM 63
           +M
Sbjct: 61 KSM 63

The following BLAST results are available for this feature:

BLAST of Tan0001315 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001315 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56989.1	3.0e-27	100.00	hypothetical protein Csa_010650 [Cucumis sativus]	[more]
KAG6597448.1	7.5e-26	89.55	hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sorori...	[more]
PHT38775.1	7.0e-24	93.33	hypothetical protein CQW23_22348 [Capsicum baccatum] >PHT85969.1 hypothetical pr...	[more]
RXH80416.1	3.5e-23	86.67	hypothetical protein DVH24_041563 [Malus domestica]	[more]
ONI26253.1	4.5e-23	87.30	hypothetical protein PRUPE_1G012900 [Prunus persica] >VVA20892.1 PREDICTED: unna...	[more]

BLAST of Tan0001315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7K5	1.5e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G147230 PE=4 SV=1	[more]
A0A2G2W0L8	3.4e-24	93.33	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_22348 PE=4 SV=1	[more]
A0A2G2ZVG2	3.4e-24	93.33	Uncharacterized protein OS=Capsicum annuum OX=4072 GN=T459_08075 PE=4 SV=1	[more]
A0A498IAF8	1.7e-23	86.67	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_041563 PE=4 SV=1	[more]
M5XVP0	2.2e-23	87.30	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G012900 PE=4 SV=1	[more]

BLAST of Tan0001315 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..59
None	No IPR available	PANTHER	PTHR33181:SF7	OS07G0572400 PROTEIN	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001315.1	Tan0001315.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001172	transcription, RNA-templated
molecular_function	GO:0003968	RNA-directed 5'-3' RNA polymerase activity