Tan0001274 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCCTTCGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCAACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCTGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGTCAGGTAGTTTCCTCAAAAGTATTCAATTTCGACGAAATGTGCTTTATTGTGAAAACTGTGTGATTTGAGTTGAGCAGTATACGCGCGATGACTGAGGATCTAGAATAGGGCACTTGTGGCGATGTAGATCGGAGCGTATTTTTAAATGAGTAGAAAAATACGCTGAATGTTCTCGTATGTAATGCTTTTATTTCTATGAAGGGTTCCAGTTGAAATGAGCTTCTGTATGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCAGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGCTGGCTTTCAGAGGGTACTTTCTATCTCTTCTTGTTCTTCTAGTAGTTTCTGGGAATTGGACTAAGTTATGAACTAGGAGTAGGTATTTGCGTGATCTGCAATTATACTAGGATGAATTTGACTCTTTTCGACGTTCTTGTTGTTATGCTATCAGTTTATTCTTTTGGTTTCTGGATTTTGTTGACATAAAATTAAACCTGCTCTGTTAGTTGAATAGCTTTATTAGTTACTTGGATTGCCTTTGTGCTGTGCAACACAGTGGAGGATAACATGTGATATACACAATTGATCCTTTAAATTTGGCCATTTGAATGCAGAATGAGAAAGAGGAGGGGGATATAGTGAAGGGAAGGTAATTTTTTTTCTTTACAAGAATCAACAACTTTTGATTGATATTAAAAAAGTTAAAGGAAAGCAAACTCCTATAAAAAGCCTAACAAGGAGGGTAATTATAGAGGAAGAATGAAGAGATTAGCTTTTATAATTCATTCTATCACAATTTTCTCTAACTGTTTCAAGACAACGATAGAAAACTACTTAGAAAACAATTTTTCCAATGACTAGTTTATCACGAATGCCACTGTTAAACCAACAGCTGCTAAATGCTATTGGATTGATTGTGCAAATGTCTTATCTGGCCCCTTCTTGTTTTCTACCTTTTTCATATCAATGAATTGGGAATTTAAGTTTACCGTCTTAAGATCAAACTAAATGCTGCATTCTGGCCTAGTGTCAAAAGTTTTTCAAATCTAAACATACAGTTGGTTATTTGTAATGAATGGCTTTCCTCCCGCTGTAACTTATGATTTAGGTGTTTATACGTCATCTTTGTATGTTACTTAATCATCCACATACTTGATATTAAATGTGAGGATACTAATTGTAATGTTTAATCAGTGTTCAATGATGATGTGTGATGAATGGTCAAGGCGATTCGAGAGAAGTTTTGTATTCAGAGTTCCACATTGTGACCGTGCCTGCTTGCTAAATTAGATGAGTTGATTCACAGGGATTTGGTTTTCCATGTCTTGATGTTCAGTCAAGTTTGCATGTCTTGAATTCTTAGTTTGTGTAACTATGGACCACTAGGATGTATAGGAAGATCTACAGTAGACAGACCATTTGCCATTTTTCCTTTTATATGAAAAGGAAGGCTTTAAAAAAAATTGGGGTCATTATGTTGGATTCCTTTATAGCAATATCTTGCAATTATGAAATAAAAATGCTTATGGAGGTTAGACTTGGAGAATTCTTCTCTAGCAGTCTTTATGCTATCTTGTATGTTACTCTATCTTTACTCATTCTATGCTATCTTGTATGTCACTCTATCTTTACTCATTCTATGTAGATTTTTCATATTTCTGATGGATGTTTGTTTTCTATGACTCTAGAGTTGTTATATGAACTCGAAAAACATTTATCTAATACATTGTAGCTGTAAGATGAATCCCAATCAAATTATTTGCTTACATATAGAGGGCACTTTGATACTAATTGCAAGGTTTTGGGTTCATTTATGTATACTGATAGATGTTAAGAGTTTAGAATGTAATCCTCGGACATTTTTAACACCATTTGAAATCTATTTGGCAGTGACTGGCTTGCAAACTTCATGA ATGGCTTCCTTCGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCAACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCTGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGTCAGGGTTCCAGTTGAAATGAGCTTCTGTATGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCAGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGCTGGCTTTCAGAGGTGACTGGCTTGCAAACTTCATGA ATGGCTTCCTTCGCCGCCAGGGCCATTTTCCGATCCTCCTCCGGCAAGGCTGCAACTCTTCTGAGCGCCGGAGCCAGAGCAGCTCCTGCTCGTTCACCATTTCGCATTGCTTCTAAACGACCTTTCTCTCAGTGTTCTGTCAGGGTTCCAGTTGAAATGAGCTTCTGTATGGAGTCGATGCTTCCGTTCCATTCTGCTACTTCTTCAGCATTGATGACTTCGATGCTTTCTGTCTCTCGCCATAGTTATGGCTGGCTTTCAGAGGTGACTGGCTTGCAAACTTCATGA MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSQCSVRVPVEMSFCMESMLPFHSATSSALMTSMLSVSRHSYGWLSEVTGLQTS Homology
BLAST of Tan0001274 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 5.8e-11 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of Tan0001274 vs. NCBI nr
Match: XP_038887455.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida]) HSP 1 Score: 166.0 bits (419), Expect = 1.6e-37 Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0
BLAST of Tan0001274 vs. NCBI nr
Match: XP_023554650.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 161.4 bits (407), Expect = 3.9e-36 Identity = 88/95 (92.63%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of Tan0001274 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo]) HSP 1 Score: 158.7 bits (400), Expect = 2.5e-35 Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 0
BLAST of Tan0001274 vs. NCBI nr
Match: XP_022969309.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 158.3 bits (399), Expect = 3.3e-35 Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of Tan0001274 vs. NCBI nr
Match: XP_038887457.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida]) HSP 1 Score: 155.6 bits (392), Expect = 2.1e-34 Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 0
BLAST of Tan0001274 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35 Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 0
BLAST of Tan0001274 vs. ExPASy TrEMBL
Match: A0A6J1I278 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468354 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35 Identity = 86/95 (90.53%), Postives = 91/95 (95.79%), Query Frame = 0
BLAST of Tan0001274 vs. ExPASy TrEMBL
Match: A0A6J1GM36 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455225 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.3e-34 Identity = 85/95 (89.47%), Postives = 90/95 (94.74%), Query Frame = 0
BLAST of Tan0001274 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33 Identity = 82/92 (89.13%), Postives = 85/92 (92.39%), Query Frame = 0
BLAST of Tan0001274 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 7.4e-33 Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 0
BLAST of Tan0001274 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 ) HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of Tan0001274 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 ) HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of Tan0001274 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 ) HSP 1 Score: 68.2 bits (165), Expect = 4.2e-12 Identity = 42/86 (48.84%), Postives = 61/86 (70.93%), Query Frame = 0
BLAST of Tan0001274 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 0
BLAST of Tan0001274 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.1e-11 Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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