Tan0001265 (gene) Snake gourd v1

Overview


Name	Tan0001265
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG03: 75295946 .. 75296215 (+)
RNA-Seq Expression	Tan0001265
Synteny	Tan0001265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCCAAAACCCTCCCCAACATAGGAACCCTCCGACTCAGGGTTGGTGGAGTCTTTAGCACGGATGCTTCTTGGAGCTCAAAGAAGGAAAATGGAGGTATTGGTTGGATTGTACGAGACTGGGAAAGTCGTTTGATCTGCACAGGTCATAAGCATATCAGATCACATTGGCCTATTTTGGTGTTGGAACTGGAGGGGATAGTTAAGGGGTTGAGATCAGTACGGAAATCACGATTTTCCTTTATTGGTCGAATCAGATTCTCTTGA

mRNA sequence

ATGAGAGCCAAAACCCTCCCCAACATAGGAACCCTCCGACTCAGGGTTGGTGGAGTCTTTAGCACGGATGCTTCTTGGAGCTCAAAGAAGGAAAATGGAGGTATTGGTTGGATTGTACGAGACTGGGAAAGTCGTTTGATCTGCACAGGTCATAAGCATATCAGATCACATTGGCCTATTTTGGTGTTGGAACTGGAGGGGATAGTTAAGGGGTTGAGATCAGTACGGAAATCACGATTTTCCTTTATTGGTCGAATCAGATTCTCTTGA

Coding sequence (CDS)

ATGAGAGCCAAAACCCTCCCCAACATAGGAACCCTCCGACTCAGGGTTGGTGGAGTCTTTAGCACGGATGCTTCTTGGAGCTCAAAGAAGGAAAATGGAGGTATTGGTTGGATTGTACGAGACTGGGAAAGTCGTTTGATCTGCACAGGTCATAAGCATATCAGATCACATTGGCCTATTTTGGTGTTGGAACTGGAGGGGATAGTTAAGGGGTTGAGATCAGTACGGAAATCACGATTTTCCTTTATTGGTCGAATCAGATTCTCTTGA

Protein sequence

MRAKTLPNIGTLRLRVGGVFSTDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSVRKSRFSFIGRIRFS

Homology

[Close]

BLAST of Tan0001265 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-04
Identity = 20/55 (36.36%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 21  STDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSV 76
           + DASWS     GGIGWI+R W+  ++  G++ + +   + +LE   I++GLR++
Sbjct: 82  NADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNL 136

[Close]

BLAST of Tan0001265 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-04
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 21  STDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSV 76
           +TDASWS ++E GGIGWI+ D    ++  G+  IR    I  LEL  I++GL+ +
Sbjct: 116 NTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFI 170

[Close]

BLAST of Tan0001265 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-04
Identity = 20/55 (36.36%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 21  STDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSV 76
           + DASWS     GGIGWI+R W+  ++  G++ + +   + +LE   I++GLR++
Sbjct: 82  NADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAILEGLRNL 136

[Close]

BLAST of Tan0001265 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-04
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 21  STDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSV 76
           +TDASWS ++E GGIGWI+ D    ++  G+  IR    I  LEL  I++GL+ +
Sbjct: 116 NTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMTIIRGLQFI 170

[Close]

BLAST of Tan0001265 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 21  STDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSVRK 78
           +TDA+W +     GIGWI+RD +  +I TG + IR+   I  LE+  I +GLR++R+
Sbjct: 266 NTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQ 322

[Close]

BLAST of Tan0001265 vs. ExPASy TrEMBL
Match: A0A6J1DQC9 (uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 21  STDASWSSKKENGGIGWIVRDWESRLICTGHKHIRSHWPILVLELEGIVKGLRSVRK 78
           +TDA+W +     GIGWI+RD +  +I TG + IR+   I  LE+  I +GLR++R+
Sbjct: 231 NTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIRAERNITYLEVMAICEGLRAIRQ 287

The following BLAST results are available for this feature:

BLAST of Tan0001265 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001265 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	2.1e-04	36.36	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022143317.1	6.2e-04	43.64	uncharacterized protein LOC111013216 [Momordica charantia]	[more]

BLAST of Tan0001265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	1.0e-04	36.36	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1CQG0	3.0e-04	43.64	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DL64	5.2e-04	42.11	uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DQC9	5.2e-04	42.11	uncharacterized protein LOC111022134 isoform X2 OS=Momordica charantia OX=3673 G...	[more]

BLAST of Tan0001265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 22..79 e-value: 5.0E-8 score: 32.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001265.1	Tan0001265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity