Tan0001209 (gene) Snake gourd v1

Overview


Name	Tan0001209
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG05: 44782989 .. 44783535 (+)
RNA-Seq Expression	Tan0001209
Synteny	Tan0001209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGAAAAAGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATATTGGTAGTGGACGATTTGAAGTTTGTGCTAACTGAGGAGTGTCCTCGGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTGGCAAGTATGTCTGACATGTTAGGCAAGAAGCATGAGGGCATGATTACCGCTAAGGAAATCATGGATTCTGTGAAGGGTATGTTTGGACAACAGCCACACAAGCCCGACATAATGCCCTAAAGTACATATTCAACTCGAGGATGCCAGAGGGTACATCTGTGCGGGATCATGTCCTAGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCAGTCGACTTCATTCTCGAAACCCTTCCGAGATAGTTTCTGCAGATTTAGAAGTAATCTTTGTTATGAACGAGCTTACTTTTAATCTTAC

mRNA sequence

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGAAAAAGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATATTGGTAGTGGACGATTTGAAGTTTGTGCTAACTGAGGAGTGTCCTCGGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTGGCAAGTATGTCTGACATGTTAGGCAAGAAGCATGAGGGCATGATTACCGCTAAGGAAATCATGGATTCTGTGAAGGGTATGTTTGGACAACAGCCACACAAGCCCGACATAATGCCCTAAAGTACATATTCAACTCGAGGATGCCAGAGGGTACATCTGTGCGGGATCATGTCCTAGATATGATGGTGCACTTTAACATCGCGGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCAGTCGACTTCATTCTCGAAACCCTTCCGAGATAGTTTCTGCAGATTTAGAAGTAATCTTTGTTATGAACGAGCTTACTTTTAATCTTAC

Coding sequence (CDS)

ATGTCTAGCTCTATAATTTCCTTATTGGGTGCGAAAAAGTTAACCGGAGAGAATATGATGACATGGAAAAACAAACTCAACACTATATTGGTAGTGGACGATTTGAAGTTTGTGCTAACTGAGGAGTGTCCTCGGGTGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTGGCAAGTATGTCTGACATGTTAGGCAAGAAGCATGAGGGCATGATTACCGCTAAGGAAATCATGGATTCTGTGAAGGGTATGTTTGGACAACAGCCACACAAGCCCGACATAATGCCCTAA

Protein sequence

MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQQPHKPDIMP

Homology

[Close]

BLAST of Tan0001209 vs. NCBI nr
Match: XP_022157844.1 (uncharacterized protein LOC111024457 [Momordica charantia])

HSP 1 Score: 159.8 bits (403), Expect = 1.3e-35
Identity = 73/104 (70.19%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. NCBI nr
Match: XP_022157632.1 (uncharacterized protein LOC111024294 [Momordica charantia])

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 73/104 (70.19%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLQFVLTEECPQTPAENANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. NCBI nr
Match: XP_022157095.1 (uncharacterized protein LOC111023904 [Momordica charantia])

HSP 1 Score: 158.7 bits (400), Expect = 3.0e-35
Identity = 73/104 (70.19%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. NCBI nr
Match: XP_022143540.1 (uncharacterized protein LOC111013417 [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 3.9e-35
Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ L  ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+D
Sbjct: 1   MNSSIVQLFASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAANANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. NCBI nr
Match: KAA0035676.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.5e-34
Identity = 73/104 (70.19%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL +KKL G+N  TWK+ LNTILVVDDL+F+LTEECP+ P SNA+R  R+AYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RWIKAN+KA+VY+LASMSD+L KKHE + T KEI+DS+KGMFGQ
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQ 104

[Close]

BLAST of Tan0001209 vs. ExPASy TrEMBL
Match: A0A6J1DXQ5 (uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024457 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.5e-36
Identity = 73/104 (70.19%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPATNANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. ExPASy TrEMBL
Match: A0A6J1DUZ9 (uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024294 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 73/104 (70.19%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLQFVLTEECPQTPAENANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. ExPASy TrEMBL
Match: A0A6J1DS54 (uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023904 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 73/104 (70.19%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P  NA+RNVR+A+D
Sbjct: 1   MNSSIVQLLASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAVNANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. ExPASy TrEMBL
Match: A0A6J1CP29 (uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013417 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ L  ++KL G N  TWKN LNTILVVDDL+FVLTEECP+ P +NA+RNVR+A+D
Sbjct: 1   MNSSIVQLFASEKLNGVNYSTWKNNLNTILVVDDLRFVLTEECPQTPAANANRNVREAFD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RW+KANDKA+VY+LASM+D+L KKHE ++TAKEIMDS+K MFG+
Sbjct: 61  RWVKANDKARVYILASMTDVLAKKHEPLMTAKEIMDSLKAMFGE 104

[Close]

BLAST of Tan0001209 vs. ExPASy TrEMBL
Match: A0A5A7T0E9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00680 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.2e-35
Identity = 73/104 (70.19%), Postives = 90/104 (86.54%), Query Frame = 0


Query: 1   MSSSIISLLGAKKLTGENMMTWKNKLNTILVVDDLKFVLTEECPRVPGSNASRNVRDAYD 60
           M+SSI+ LL +KKL G+N  TWK+ LNTILVVDDL+F+LTEECP+ P SNA+R  R+AYD
Sbjct: 1   MNSSIVQLLASKKLNGDNYATWKSNLNTILVVDDLRFILTEECPQTPTSNANRASREAYD 60

Query: 61  RWIKANDKAKVYMLASMSDMLGKKHEGMITAKEIMDSVKGMFGQ 105
           RWIKAN+KA+VY+LASMSD+L KKHE + T KEI+DS+KGMFGQ
Sbjct: 61  RWIKANEKARVYILASMSDVLAKKHECLATTKEIVDSLKGMFGQ 104

The following BLAST results are available for this feature:

BLAST of Tan0001209 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001209 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157844.1	1.3e-35	70.19	uncharacterized protein LOC111024457 [Momordica charantia]	[more]
XP_022157632.1	2.3e-35	70.19	uncharacterized protein LOC111024294 [Momordica charantia]	[more]
XP_022157095.1	3.0e-35	70.19	uncharacterized protein LOC111023904 [Momordica charantia]	[more]
XP_022143540.1	3.9e-35	69.23	uncharacterized protein LOC111013417 [Momordica charantia]	[more]
KAA0035676.1	1.5e-34	70.19	gag/pol protein [Cucumis melo var. makuwa] >TYK30868.1 gag/pol protein [Cucumis ...	[more]

BLAST of Tan0001209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXQ5	6.5e-36	70.19	uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DUZ9	1.1e-35	70.19	uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DS54	1.4e-35	70.19	uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP29	1.9e-35	69.23	uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A5A7T0E9	7.2e-35	70.19	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0068...	[more]

BLAST of Tan0001209 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 6..107
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 6..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001209.1	Tan0001209.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding