Tan0001207 (gene) Snake gourd v1

Overview


Name	Tan0001207
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	10 kDa chaperonin
Location	LG10: 3748272 .. 3751605 (+)
RNA-Seq Expression	Tan0001207
Synteny	Tan0001207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCACAATTGCGCTTGAAATTTAGAACGCTCTAGAATTTATCTTCCCTCTCTAAAACGTTTCTCCCGCTCGCCTCATTCGACTCCATAGAATTTGGCTTCTTCGACTCACTATCCATGGCGATGGCGTCTACGTTCCTTACAGTGCCAAAGCCCTTCATCGACAGGGCTAATTCACCTTCTGTATCTTCCCGGCGGCAAGTAATCGGTACGCTGGGAACTCCGTTGGTAGAGAGATTGTTGCATTTTTCTTTTTTCTTGATCAATTTTTGTCTCGTTCCGTCTTCTGAATTTCTGTATGATTTTGCTTCTTGAGTTTTGGATAGGCGGTTTGCGAAGAAGTTCTTTGAAAGTTAGCGCAGTTTCTAAGAAATGGGAGCCGGCGAAGGTTTTCCTCGTTCTTTCTTCTGAAATCTCCTTAGCGATTTTAGAATTTTCTCTTTCCTATGTGTTATTGGACTTGTGGTTTTGATTTCGATGCTTGTGGAGTTCAGGTTGTTCCTCAAGCTGATAGAGTTCTTGTCCGTCTTGAAGAGCTTCCTGAGGTAAGCTCACTCTAAAAAAATGGCGAATGAATTTGTAGAATTCTGTAACTCGTAGAGCTTGTTGGATGTATTGAAAACTGTAAAATGTTTCATAAAATTGATATGTTTTATTGTGGTAGAAATCAACTGGTGGAGTTTTGCTGCCCAAATCAGCTGTCAAATTTGAGCGATATCTTGTGGGAGAGGTGAGGCAAATCCTTCTATTACAGTTGCTATTTTATCTGTATTTATTCATGTGAAGAAATGTGTTTGATAATCGATATTATGTTTCTATCAGATTCTATCCATTGGAACAGAAGTCGGAGGAAGTGATATTGCACCTGGAAAGAAGGTAATTAAGGATTTTCTTTAGTGAAATTTGAGGCTGTAAGTGTGTTTTATAAATTTGGTTTTTCTTAAGTAATGGTGAGTTTGTAGTGTGTTTGTTTTCATTTAAGGGAAGCAGTTTTTAATAAGCACCTTTAGAAAGTACTTTTCAATGGTCTTTGTAGTGTTTTTTAGTATTTTCAATAACTCTTCTAGTTACGTAACTAAACACAGAGAAATTGGAGAAGTGCTTTTTAACTAGCCAAGAACATTATTTTTTGTTCCAAAACCGTGCCAAATCCACCCTTATTATTATCAAACTTTTGAGACTTGTTTTTATCTAAGAGGAGCAAATCTCTCTTACCTTGCAGGTTCTTTTATCCGACATAAATGCTTATGAGGTAAGTCGTCTGGTTTGGTGGAGTTATTTATGGTCCAGTTTTCCTTCACAAGTATTGGTTACCACAAGTGTGCTGCAATCATATCTTTGGTTGTTAAGGGTAAAATACATAGGGTTGCTTTAGATTCTAAGTTTGTTTGAATTGGGTAAGTCTAAACATGCATATATTATTTTATTTTATAGTTTTCTTTAGATCATTTACTGAACAACTTTAGGAAAATGGTTCTTTAAGTCTTTGGCTATAGTTTTCATAAAATAAAGTTTTTCATCGTATTAATGATCTGTTATTCAACAATTGAATAAGTTGTTCGGTACTTATGGGGCTGACATTTTCACTTTTTATCGTTACAAAGTTGTTAACAATTGACCCAAACAATTACACTTTTTACAAAATGTCCTAAAATTAAGGTCATAGTTTCTAGTGTTTAGGATTTTTCCTGTGTGCTAGTTGTTTCGGGATGAGTACTGCCATTCTTACTGTGAAGGTACACTGATTGATGTAAAACTGCCATTAATTCCTCAAGACTCTTAACTGTAGGGCCACAAGTACTAGATATGTTTCTAGGAAAAATGTTTGTTAAGATTACTAATTTTAGCAATGCAGACTTGGATCTTTTATAGTCTAATAACTTATATCATGTATATTAGCTGACCCTCTCACTCATGTCATGGAGTAGTGATTCATGTTCATTTTTCTCCCTACCCTAAAGATTATTTTTCCTTCTATCTCTCTCCATTTTGGATTTCAAAATGAAGGAAATGAATTCAATGAGGTTTCTCATATGTTAAATCCCAGCCATAGTAGCCAAGCCACTTAATTCTACATGTTTTTCAACGTCAAAAGTTGTTAGTTTTAGTAGGTATCACATGCGTTTAGTCGAAATGCTCAAACGGATCTGGGATACTCATTTAAAAAAAAAAAACTGTTGGCAGTCAAGAGTGATAACTTTGTACATCAAAATAAGCCAAATGACTGTAGTTTGTAATGTTCCAAGTGCTGAACACCAGAGTGATAAGGATTCGTTATTGAGAGTTAAACAACATGGGGTTGTGGGATTCGAAGCTCTAGCCTCCTGATCGAGAATATATATCCCAATTGAACTATGTTCAAATTGTGCATGCATATTGGAAACATCTAGTTGTGGTATTTGTTGTTAAGCATGTGACAAACAAACCTACAGCTGAACATAGCCAATATTTTGATGATTAATCTCTCTCTCACACACACACACATATAGATTCATTGTGAATGTTGGTGATTTCTCAGGTGGATTTGGGCACAGATGCTAAGCACTGTTTCTGTAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCACAACTTTCTCCAACACTTCAATGCTTATCAACATCAGTTATTTTCACTCAGATCAGTTCTCTTTCCTCATTGATTGTCATTTGCTTGTTACTTCTGCAATATCTGATTTTAATTTTTGTTTTGATTGATCTGTGTGACCTGTAAAGATGTTAGTTATTCTCATTGGGAAAAATAGCTTAGATTATTTTAAAAAGACAGTCAACCTTTAAAAGCAAACTGAAGAAAGACAAGAATAAAATAGTTATGCAAATAGATTTTTACTATTTTTCCCCCTTTCAAACTGTCTTTAGAGGATGTGTAGTTTGTAGGTTAGGTTTGGTTTTGGATTATGAAGTTGAGTCTACTAATTGATTTATGGACAGTTTGCTAATCTCATAGCTATATGAATTTAGGTGGTTAAAATTCTTCTCCCTCAAGTTACAAACATAAACTTGTAAATCGAAAAACATGACTCTATAAATTTAGGTCCCGTTTGATAACTATTTGGTTTTTTGTTTTTAAAAAGTATGCTTGTTTTTCTACAATTTCTCTTCTTCTAATAATGATTTCCATTTTTCTTGAGATACCATTTAAGTTTCTAACCAAATTTCAAAAACAAAAACAAAATTTTAAAAGCTACCTTTTTAGGTCCGATTTAATAACTATTTGGTTTTTAGAAATTGTGCTGGTTTTTCCACAATTTCTCCTCATCTTCTCTACAACGGTTTCCATCTCTCTTGAGCTACCATTTAAGTTTCTA

mRNA sequence

TGCACAATTGCGCTTGAAATTTAGAACGCTCTAGAATTTATCTTCCCTCTCTAAAACGTTTCTCCCGCTCGCCTCATTCGACTCCATAGAATTTGGCTTCTTCGACTCACTATCCATGGCGATGGCGTCTACGTTCCTTACAGTGCCAAAGCCCTTCATCGACAGGGCTAATTCACCTTCTGTATCTTCCCGGCGGCAAGTAATCGGCGGTTTGCGAAGAAGTTCTTTGAAAGTTAGCGCAGTTTCTAAGAAATGGGAGCCGGCGAAGGTTGTTCCTCAAGCTGATAGAGTTCTTGTCCGTCTTGAAGAGCTTCCTGAGAAATCAACTGGTGGAGTTTTGCTGCCCAAATCAGCTGTCAAATTTGAGCGATATCTTGTGGGAGAGATTCTATCCATTGGAACAGAAGTCGGAGGAAGTGATATTGCACCTGGAAAGAAGGTTCTTTTATCCGACATAAATGCTTATGAGGTGGATTTGGGCACAGATGCTAAGCACTGTTTCTGTAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAGAGAAGCTTCACAACTTTCTCCAACACTTCAATGCTTATCAACATCAGTTATTTTCACTCAGATCAGTTCTCTTTCCTCATTGATTGTCATTTGCTTGTTACTTCTGCAATATCTGATTTTAATTTTTGTTTTGATTGATCTGTGTGACCTGTAAAGATGTTAGTTATTCTCATTGGGAAAAATAGCTTAGATTATTTTAAAAAGACAGTCAACCTTTAAAAGCAAACTGAAGAAAGACAAGAATAAAATAGTTATGCAAATAGATTTTTACTATTTTTCCCCCTTTCAAACTGTCTTTAGAGGATGTGTAGTTTGTAGGTTAGGTTTGGTTTTGGATTATGAAGTTGAGTCTACTAATTGATTTATGGACAGTTTGCTAATCTCATAGCTATATGAATTTAGGTGGTTAAAATTCTTCTCCCTCAAGTTACAAACATAAACTTGTAAATCGAAAAACATGACTCTATAAATTTAGGTCCCGTTTGATAACTATTTGGTTTTTTGTTTTTAAAAAGTATGCTTGTTTTTCTACAATTTCTCTTCTTCTAATAATGATTTCCATTTTTCTTGAGATACCATTTAAGTTTCTAACCAAATTTCAAAAACAAAAACAAAATTTTAAAAGCTACCTTTTTAGGTCCGATTTAATAACTATTTGGTTTTTAGAAATTGTGCTGGTTTTTCCACAATTTCTCCTCATCTTCTCTACAACGGTTTCCATCTCTCTTGAGCTACCATTTAAGTTTCTA

Coding sequence (CDS)

ATGGCGATGGCGTCTACGTTCCTTACAGTGCCAAAGCCCTTCATCGACAGGGCTAATTCACCTTCTGTATCTTCCCGGCGGCAAGTAATCGGCGGTTTGCGAAGAAGTTCTTTGAAAGTTAGCGCAGTTTCTAAGAAATGGGAGCCGGCGAAGGTTGTTCCTCAAGCTGATAGAGTTCTTGTCCGTCTTGAAGAGCTTCCTGAGAAATCAACTGGTGGAGTTTTGCTGCCCAAATCAGCTGTCAAATTTGAGCGATATCTTGTGGGAGAGATTCTATCCATTGGAACAGAAGTCGGAGGAAGTGATATTGCACCTGGAAAGAAGGTTCTTTTATCCGACATAAATGCTTATGAGGTGGATTTGGGCACAGATGCTAAGCACTGTTTCTGTAAAGCTGGTGATTTGTTAGCTGTGGTTGAGTAG

Protein sequence

MAMASTFLTVPKPFIDRANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRVLVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAVVE

Homology

[Close]

BLAST of Tan0001207 vs. ExPASy Swiss-Prot
Match: Q9M1C2 (10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.5e-47
Identity = 95/142 (66.90%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 3   MASTFLTVPKPFID---RANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 62
           MAS+F+TVPKPF+    + N+P++   +Q + G+RR+S +++AVS KWEPAKVVPQADRV
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLP--QQTLLGIRRNSFRINAVSTKWEPAKVVPQADRV 60

Query: 63  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 122
           LVRLE LPEKS+GGVLLPKSAVKFERYL GE++S+G+EVG  ++ PGKKVL SD++AYEV
Sbjct: 61  LVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVG--EVEPGKKVLFSDMSAYEV 120

Query: 123 DLGT-DAKHCFCKAGDLLAVVE 141
           D GT DAKHCFCK  DLLA+V+
Sbjct: 121 DFGTEDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of Tan0001207 vs. ExPASy Swiss-Prot
Match: O80504 (10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-43
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 3   MASTFL-TVPKPFID---RANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADR 62
           MASTF+ ++P PF     +A +PS ++    + G RR  L++ A+S KWEP KVVPQADR
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTAN--HTLLGSRRGCLRIKAISTKWEPTKVVPQADR 60

Query: 63  VLVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYE 122
           VLVRLE+LP KS+GGVLLPK+AVKFERYL GEI+S+G+EV G  + PGK+VL SD++AYE
Sbjct: 61  VLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEV-GQQVGPGKRVLFSDVSAYE 120

Query: 123 VDLGTDAKHCFCKAGDLLAVVE 141
           VDLGTDA+HCFCK  DLLA+VE
Sbjct: 121 VDLGTDARHCFCKESDLLALVE 139

[Close]

BLAST of Tan0001207 vs. ExPASy Swiss-Prot
Match: O65282 (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 17  RANSPSVSSRRQVIGGLRRSSLK------VSAVSKKWEPAKVVPQADRVLVRLEELPEKS 76
           RA+S   SS +   G LR+S  +       S V+ K+   K  P  DRVLV+++E  EK+
Sbjct: 25  RASSVKFSSLKP--GTLRQSQFRRLVVKAASVVAPKYTSIK--PLGDRVLVKIKEAEEKT 84

Query: 77  TGGVLLPKSAVK----FERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVDLGTDAK 136
            GG+LLP +A       E   VGE  +IG       +  G +++ S     EV+   D K
Sbjct: 85  LGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVK 144

Query: 137 HCFCKAGDLLAVVE 141
           H   K  D++ ++E
Sbjct: 145 HLILKEDDIVGILE 153

[Close]

BLAST of Tan0001207 vs. ExPASy Swiss-Prot
Match: Q0I7U2 (10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) OX=64471 GN=groS PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-06
Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 52  VVPQADRVLVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIG---TEVGGSDIAP--- 111
           V P  DRV V++ E  EK+ GG+LLP +A   E+  VGE++ +G   +   GS  AP   
Sbjct: 11  VKPLGDRVFVKISESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKSNDDGSRQAPEVG 70

Query: 112 -GKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAVV 140
            G KVL S     ++ LG+D ++      D+LAVV
Sbjct: 71  IGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of Tan0001207 vs. ExPASy Swiss-Prot
Match: A5GNB0 (10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-06
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 52  VVPQADRVLVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSD-------IA 111
           V P  DRV V++ E  EK+ GG+LLP +A   E+  VGE++ +G      D       + 
Sbjct: 11  VKPLGDRVFVKVSESEEKTAGGILLPDTAK--EKPQVGEVVQVGPGKANEDGSRQAPEVG 70

Query: 112 PGKKVLLSDINAYEVDLGTDAKHCFCKAGDLLAVV 140
            G KVL S     ++ LG+D ++      D+LAVV
Sbjct: 71  VGDKVLYSKYAGTDIKLGSD-EYVLLSEKDILAVV 102

[Close]

BLAST of Tan0001207 vs. NCBI nr
Match: XP_008438275.1 (PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo] >KAA0049110.1 10 kDa chaperonin isoform X1 [Cucumis melo var. makuwa] >TYK17453.1 10 kDa chaperonin isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 126/141 (89.36%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRAN-SPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 60
           MAMASTFLTVPKPFI+  N SPSVS+RR +IGGLR S+LKVSA+S+KWEPAKVVPQADRV
Sbjct: 1   MAMASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

Query: 61  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 120
           LVRLEELPEKS GGVLLPKSAVKFERYLVGEILS+G EVGG+DIAPGKKVLLSDINAYEV
Sbjct: 61  LVRLEELPEKSAGGVLLPKSAVKFERYLVGEILSVGAEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKAGDLLAVVE 141
           DLGTDAKHCFCKAGDLLAVVE
Sbjct: 121 DLGTDAKHCFCKAGDLLAVVE 141

[Close]

BLAST of Tan0001207 vs. NCBI nr
Match: XP_023539001.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.9 bits (629), Expect = 1.0e-61
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRVL 60
           MAMASTFLTVPKPF D ANS SVSSR+Q+ GG RRSSLKVSAVSKKWEP KVVPQADRVL
Sbjct: 1   MAMASTFLTVPKPFNDLANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  VRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVD 120
           +RLEELPEKS GGVLLPKSAVKFER+LVGEILSIG+EVGG+D+APGKKVLLSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGTDLAPGKKVLLSDINAYEVD 120

Query: 121 LGTDAKHCFCKAGDLLAVVE 141
           LGTDAKHCFCKA DLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of Tan0001207 vs. NCBI nr
Match: XP_022936135.1 (10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata] >KAG6597250.1 10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-61
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRVL 60
           MAMASTF+TVPKPF D ANS SVSSR+Q+ GG RRSSLKVSAVSKKWEP KVVPQADRVL
Sbjct: 1   MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  VRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVD 120
           +RLEELPEKS GGVLLPKSAVKFER+LVGEILSIG+EVGGSD+APGKKV+LSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120

Query: 121 LGTDAKHCFCKAGDLLAVVE 141
           LGTDAKHCFCKA DLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of Tan0001207 vs. NCBI nr
Match: XP_022974766.1 (10 kDa chaperonin 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022974767.1 10 kDa chaperonin 1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 244.6 bits (623), Expect = 5.1e-61
Identity = 124/140 (88.57%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRVL 60
           MAMASTF+TVPKPF D ANS SVSSRR + GG RRSSLKVSAVSKKWEP KVVPQADRVL
Sbjct: 1   MAMASTFVTVPKPFNDWANSSSVSSRRLITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  VRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVD 120
           +RLEELPEKS GGVLLPKSAVKFER+LVGEILSIG+EVGGSD+APGKKV+LSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120

Query: 121 LGTDAKHCFCKAGDLLAVVE 141
           LGTDAKHCFCKA DLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of Tan0001207 vs. NCBI nr
Match: XP_004133964.1 (10 kDa chaperonin 1, chloroplastic [Cucumis sativus] >KGN56679.1 hypothetical protein Csa_010283 [Cucumis sativus])

HSP 1 Score: 244.2 bits (622), Expect = 6.7e-61
Identity = 124/141 (87.94%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRAN-SPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 60
           MAMASTF TVPKPFI+  N SPSVS+RR + GGLR S+LKVSA+SKKWEPAKVVPQADRV
Sbjct: 1   MAMASTFFTVPKPFINTPNTSPSVSTRRLITGGLRSSNLKVSAISKKWEPAKVVPQADRV 60

Query: 61  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 120
           LVRLEELPEKS GGVLLPKSAVKFERYLVG ILS+GTEVGG+DIAPGKKVLLSDINAYEV
Sbjct: 61  LVRLEELPEKSVGGVLLPKSAVKFERYLVGVILSVGTEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKAGDLLAVVE 141
           DLGTDAKHCFCKAGDLLA+VE
Sbjct: 121 DLGTDAKHCFCKAGDLLAIVE 141

[Close]

BLAST of Tan0001207 vs. ExPASy TrEMBL
Match: A0A5D3CZW2 (10 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003170 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.0e-62
Identity = 126/141 (89.36%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRAN-SPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 60
           MAMASTFLTVPKPFI+  N SPSVS+RR +IGGLR S+LKVSA+S+KWEPAKVVPQADRV
Sbjct: 1   MAMASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

Query: 61  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 120
           LVRLEELPEKS GGVLLPKSAVKFERYLVGEILS+G EVGG+DIAPGKKVLLSDINAYEV
Sbjct: 61  LVRLEELPEKSAGGVLLPKSAVKFERYLVGEILSVGAEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKAGDLLAVVE 141
           DLGTDAKHCFCKAGDLLAVVE
Sbjct: 121 DLGTDAKHCFCKAGDLLAVVE 141

[Close]

BLAST of Tan0001207 vs. ExPASy TrEMBL
Match: A0A1S3AWL8 (10 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.0e-62
Identity = 126/141 (89.36%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRAN-SPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 60
           MAMASTFLTVPKPFI+  N SPSVS+RR +IGGLR S+LKVSA+S+KWEPAKVVPQADRV
Sbjct: 1   MAMASTFLTVPKPFINIPNTSPSVSARRLIIGGLRSSTLKVSAISRKWEPAKVVPQADRV 60

Query: 61  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 120
           LVRLEELPEKS GGVLLPKSAVKFERYLVGEILS+G EVGG+DIAPGKKVLLSDINAYEV
Sbjct: 61  LVRLEELPEKSAGGVLLPKSAVKFERYLVGEILSVGAEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKAGDLLAVVE 141
           DLGTDAKHCFCKAGDLLAVVE
Sbjct: 121 DLGTDAKHCFCKAGDLLAVVE 141

[Close]

BLAST of Tan0001207 vs. ExPASy TrEMBL
Match: A0A6J1FCS3 (10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442821 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 124/140 (88.57%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRVL 60
           MAMASTF+TVPKPF D ANS SVSSR+Q+ GG RRSSLKVSAVSKKWEP KVVPQADRVL
Sbjct: 1   MAMASTFVTVPKPFNDWANSSSVSSRQQITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  VRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVD 120
           +RLEELPEKS GGVLLPKSAVKFER+LVGEILSIG+EVGGSD+APGKKV+LSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120

Query: 121 LGTDAKHCFCKAGDLLAVVE 141
           LGTDAKHCFCKA DLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of Tan0001207 vs. ExPASy TrEMBL
Match: A0A6J1ICA1 (10 kDa chaperonin 1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473490 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.5e-61
Identity = 124/140 (88.57%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRVL 60
           MAMASTF+TVPKPF D ANS SVSSRR + GG RRSSLKVSAVSKKWEP KVVPQADRVL
Sbjct: 1   MAMASTFVTVPKPFNDWANSSSVSSRRLITGGFRRSSLKVSAVSKKWEPTKVVPQADRVL 60

Query: 61  VRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVD 120
           +RLEELPEKS GGVLLPKSAVKFER+LVGEILSIG+EVGGSD+APGKKV+LSDINAYEVD
Sbjct: 61  LRLEELPEKSAGGVLLPKSAVKFERHLVGEILSIGSEVGGSDLAPGKKVILSDINAYEVD 120

Query: 121 LGTDAKHCFCKAGDLLAVVE 141
           LGTDAKHCFCKA DLLAVVE
Sbjct: 121 LGTDAKHCFCKASDLLAVVE 140

[Close]

BLAST of Tan0001207 vs. ExPASy TrEMBL
Match: A0A0A0L6L9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.2e-61
Identity = 124/141 (87.94%), Postives = 132/141 (93.62%), Query Frame = 0


Query: 1   MAMASTFLTVPKPFIDRAN-SPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 60
           MAMASTF TVPKPFI+  N SPSVS+RR + GGLR S+LKVSA+SKKWEPAKVVPQADRV
Sbjct: 1   MAMASTFFTVPKPFINTPNTSPSVSTRRLITGGLRSSNLKVSAISKKWEPAKVVPQADRV 60

Query: 61  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 120
           LVRLEELPEKS GGVLLPKSAVKFERYLVG ILS+GTEVGG+DIAPGKKVLLSDINAYEV
Sbjct: 61  LVRLEELPEKSVGGVLLPKSAVKFERYLVGVILSVGTEVGGNDIAPGKKVLLSDINAYEV 120

Query: 121 DLGTDAKHCFCKAGDLLAVVE 141
           DLGTDAKHCFCKAGDLLA+VE
Sbjct: 121 DLGTDAKHCFCKAGDLLAIVE 141

[Close]

BLAST of Tan0001207 vs. TAIR 10
Match: AT3G60210.1 (GroES-like family protein )

HSP 1 Score: 188.0 bits (476), Expect = 5.3e-48
Identity = 95/142 (66.90%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 3   MASTFLTVPKPFID---RANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADRV 62
           MAS+F+TVPKPF+    + N+P++   +Q + G+RR+S +++AVS KWEPAKVVPQADRV
Sbjct: 1   MASSFITVPKPFLSFPIKTNAPTLP--QQTLLGIRRNSFRINAVSTKWEPAKVVPQADRV 60

Query: 63  LVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEV 122
           LVRLE LPEKS+GGVLLPKSAVKFERYL GE++S+G+EVG  ++ PGKKVL SD++AYEV
Sbjct: 61  LVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVGSEVG--EVEPGKKVLFSDMSAYEV 120

Query: 123 DLGT-DAKHCFCKAGDLLAVVE 141
           D GT DAKHCFCK  DLLA+V+
Sbjct: 121 DFGTEDAKHCFCKESDLLAIVQ 138

[Close]

BLAST of Tan0001207 vs. TAIR 10
Match: AT2G44650.1 (chloroplast chaperonin 10 )

HSP 1 Score: 175.6 bits (444), Expect = 2.7e-44
Identity = 90/142 (63.38%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 3   MASTFL-TVPKPFID---RANSPSVSSRRQVIGGLRRSSLKVSAVSKKWEPAKVVPQADR 62
           MASTF+ ++P PF     +A +PS ++    + G RR  L++ A+S KWEP KVVPQADR
Sbjct: 1   MASTFVCSLPNPFFAFPVKATTPSTAN--HTLLGSRRGCLRIKAISTKWEPTKVVPQADR 60

Query: 63  VLVRLEELPEKSTGGVLLPKSAVKFERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYE 122
           VLVRLE+LP KS+GGVLLPK+AVKFERYL GEI+S+G+EV G  + PGK+VL SD++AYE
Sbjct: 61  VLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVGSEV-GQQVGPGKRVLFSDVSAYE 120

Query: 123 VDLGTDAKHCFCKAGDLLAVVE 141
           VDLGTDA+HCFCK  DLLA+VE
Sbjct: 121 VDLGTDARHCFCKESDLLALVE 139

[Close]

BLAST of Tan0001207 vs. TAIR 10
Match: AT5G20720.1 (chaperonin 20 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 17  RANSPSVSSRRQVIGGLRRSSLK------VSAVSKKWEPAKVVPQADRVLVRLEELPEKS 76
           RA+S   SS +   G LR+S  +       S V+ K+   K  P  DRVLV+++E  EK+
Sbjct: 25  RASSVKFSSLKP--GTLRQSQFRRLVVKAASVVAPKYTSIK--PLGDRVLVKIKEAEEKT 84

Query: 77  TGGVLLPKSAVK----FERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVDLGTDAK 136
            GG+LLP +A       E   VGE  +IG       +  G +++ S     EV+   D K
Sbjct: 85  LGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVK 144

Query: 137 HCFCKAGDLLAVVE 141
           H   K  D++ ++E
Sbjct: 145 HLILKEDDIVGILE 153

[Close]

BLAST of Tan0001207 vs. TAIR 10
Match: AT5G20720.2 (chaperonin 20 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 17  RANSPSVSSRRQVIGGLRRSSLK------VSAVSKKWEPAKVVPQADRVLVRLEELPEKS 76
           RA+S   SS +   G LR+S  +       S V+ K+   K  P  DRVLV+++E  EK+
Sbjct: 25  RASSVKFSSLKP--GTLRQSQFRRLVVKAASVVAPKYTSIK--PLGDRVLVKIKEAEEKT 84

Query: 77  TGGVLLPKSAVK----FERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVDLGTDAK 136
            GG+LLP +A       E   VGE  +IG       +  G +++ S     EV+   D K
Sbjct: 85  LGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVK 144

Query: 137 HCFCKAGDLLAVVE 141
           H   K  D++ ++E
Sbjct: 145 HLILKEDDIVGILE 153

[Close]

BLAST of Tan0001207 vs. TAIR 10
Match: AT5G20720.3 (chaperonin 20 )

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 44/134 (32.84%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 17  RANSPSVSSRRQVIGGLRRSSLK------VSAVSKKWEPAKVVPQADRVLVRLEELPEKS 76
           RA+S   SS +   G LR+S  +       S V+ K+   K  P  DRVLV+++E  EK+
Sbjct: 25  RASSVKFSSLKP--GTLRQSQFRRLVVKAASVVAPKYTSIK--PLGDRVLVKIKEAEEKT 84

Query: 77  TGGVLLPKSAVK----FERYLVGEILSIGTEVGGSDIAPGKKVLLSDINAYEVDLGTDAK 136
            GG+LLP +A       E   VGE  +IG       +  G +++ S     EV+   D K
Sbjct: 85  LGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEF-NDVK 144

Query: 137 HCFCKAGDLLAVVE 141
           H   K  D++ ++E
Sbjct: 145 HLILKEDDIVGILE 153

The following BLAST results are available for this feature:

BLAST of Tan0001207 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1C2	7.5e-47	66.90	10 kDa chaperonin 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-1 PE...	[more]
O80504	3.8e-43	63.38	10 kDa chaperonin 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN10-2 PE...	[more]
O65282	1.7e-06	32.84	20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPN20 PE=1 S...	[more]
Q0I7U2	2.2e-06	38.95	10 kDa chaperonin OS=Synechococcus sp. (strain CC9311) OX=64471 GN=groS PE=3 SV=...	[more]
A5GNB0	2.9e-06	35.79	10 kDa chaperonin OS=Synechococcus sp. (strain WH7803) OX=32051 GN=groS PE=3 SV=...	[more]

BLAST of Tan0001207 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438275.1	1.0e-61	89.36	PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo] >KAA0049110.1 10 kDa chap...	[more]
XP_023539001.1	1.0e-61	89.29	10 kDa chaperonin 1, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022936135.1	2.3e-61	88.57	10 kDa chaperonin 1, chloroplastic-like [Cucurbita moschata] >KAG6597250.1 10 kD...	[more]
XP_022974766.1	5.1e-61	88.57	10 kDa chaperonin 1, chloroplastic-like isoform X1 [Cucurbita maxima] >XP_022974...	[more]
XP_004133964.1	6.7e-61	87.94	10 kDa chaperonin 1, chloroplastic [Cucumis sativus] >KGN56679.1 hypothetical pr...	[more]

BLAST of Tan0001207 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZW2	5.0e-62	89.36	10 kDa chaperonin isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3AWL8	5.0e-62	89.36	10 kDa chaperonin isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483436 PE=4 SV=1	[more]
A0A6J1FCS3	1.1e-61	88.57	10 kDa chaperonin 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1ICA1	2.5e-61	88.57	10 kDa chaperonin 1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0L6L9	3.2e-61	87.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128890 PE=4 SV=1	[more]

BLAST of Tan0001207 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60210.1	5.3e-48	66.90	GroES-like family protein	[more]
AT2G44650.1	2.7e-44	63.38	chloroplast chaperonin 10	[more]
AT5G20720.1	1.2e-07	32.84	chaperonin 20	[more]
AT5G20720.2	1.2e-07	32.84	chaperonin 20	[more]
AT5G20720.3	1.2e-07	32.84	chaperonin 20	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020818	GroES chaperonin family	SMART	SM00883	Cpn10_2	coord: 51..129 e-value: 1.3E-5 score: 27.0
IPR020818	GroES chaperonin family	PFAM	PF00166	Cpn10	coord: 51..109 e-value: 1.8E-7 score: 31.1
IPR020818	GroES chaperonin family	PANTHER	PTHR10772	10 KDA HEAT SHOCK PROTEIN	coord: 18..129
IPR020818	GroES chaperonin family	CDD	cd00320	cpn10	coord: 51..129 e-value: 1.52327E-11 score: 54.8207
IPR037124	GroES chaperonin superfamily	GENE3D	2.30.33.40	GroES chaperonin	coord: 48..130 e-value: 9.6E-8 score: 33.8
None	No IPR available	PANTHER	PTHR10772:SF13	10 KDA CHAPERONIN 1, CHLOROPLASTIC-RELATED	coord: 18..129
IPR011032	GroES-like superfamily	SUPERFAMILY	50129	GroES-like	coord: 51..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001207.1	Tan0001207.1	mRNA
Tan0001207.2	Tan0001207.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051085	chaperone cofactor-dependent protein refolding
biological_process	GO:0006457	protein folding
cellular_component	GO:0005759	mitochondrial matrix
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051082	unfolded protein binding