Tan0001107 (gene) Snake gourd v1

Overview


Name	Tan0001107
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	LG05: 72422220 .. 72422576 (-)
RNA-Seq Expression	Tan0001107
Synteny	Tan0001107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAGATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAACCTTTGAAGAAACGCCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCAAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATAAAAAGTTTATAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTATCGAACATGATCCTATCTAA

mRNA sequence

ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAGATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAACCTTTGAAGAAACGCCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCAAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATAAAAAGTTTATAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTATCGAACATGATCCTATCTAA

Coding sequence (CDS)

ATGAACTTAATGTTCTCAATTGCGATGTCAATCCCAGATTTAGTACATTTATATATCAATGTAAGAAGGATGAATGTGAATGTACAAACCTTTGAAGAAACGCCTATTCAATCTGTTGATCCTAGCCTAGGTGTTGAATCAAGCCAATGTCTTGACCCAGATCCTCAAATAGTTGGTACACCGTGTGATGATGAAGATATGGTTACAAATAATACATATAAAAAGTTTATAACTGAAACAGATGATGAATTTGAAGAGTTGGATTTTGAGAATAGTGTACATGACATCCCTTCAAACACATTTAATGAGTTGGATAACAATGTATTAGATAACACTATCGAACATGATCCTATCTAA

Protein sequence

MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI

Homology

[Close]

BLAST of Tan0001107 vs. NCBI nr
Match: KAA0060519.1 (uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa] >TYK00759.1 uncharacterized protein E5676_scaffold420G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.0e-14
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 9   MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDM 68
           M IP++VHLY+NV RM +++    E P   ++     + +Q + PD +IV +   DDE+M
Sbjct: 1   MPIPNMVHLYVNVSRMGLDINMNSE-PFGQLE-----DQTQVIVPDTEIVASSVYDDEEM 60

Query: 69  VTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           V NN Y  F TETDDEFEE DF+   H++PSNT  +++ +V+D+  EHDPI
Sbjct: 61  VANNEYMDFQTETDDEFEEFDFDGREHELPSNTLTQINMDVIDSIREHDPI 105

[Close]

BLAST of Tan0001107 vs. NCBI nr
Match: KAA0040603.1 (uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa] >TYK05645.1 uncharacterized protein E5676_scaffold98G001070 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 6.8e-14
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 9   MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQI-VGTPCDDEDM 68
           M IP++VHLY+NV R+ +++    E P   ++       +Q + PD +I V +  DDE++
Sbjct: 1   MLIPNMVHLYVNVSRVGLDINLNSE-PFGQLE-----NRTQVIVPDSEIVVSSVYDDEEI 60

Query: 69  VTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           VTNN Y  F TETDDEFEE DF+   H++PSNT  ++D +V+D+  EH+PI
Sbjct: 61  VTNNEYMDFRTETDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSICEHNPI 105

[Close]

BLAST of Tan0001107 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.8e-14
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGT 60
           MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINL-------NVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPI 151

[Close]

BLAST of Tan0001107 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MNLMFSIAMSIPDLVHLYINV----RRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQ 60
           MN MFSIA+S P++VHLY+ V      +N+NV+         V+P          + D  
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEP----------ESDAP 102

Query: 61  IVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHD 119
           +V   C +E+MV  N Y +F TETDDEFEE+DF+   +++PSNTF +LD N +D   EHD
Sbjct: 103 LV---CHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHD 151

[Close]

BLAST of Tan0001107 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-13
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGT 60
           MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINL-------NVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPI 151

[Close]

BLAST of Tan0001107 vs. ExPASy TrEMBL
Match: A0A5A7V456 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00210 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.0e-15
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 9   MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGTPC-DDEDM 68
           M IP++VHLY+NV RM +++    E P   ++     + +Q + PD +IV +   DDE+M
Sbjct: 1   MPIPNMVHLYVNVSRMGLDINMNSE-PFGQLE-----DQTQVIVPDTEIVASSVYDDEEM 60

Query: 69  VTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           V NN Y  F TETDDEFEE DF+   H++PSNT  +++ +V+D+  EHDPI
Sbjct: 61  VANNEYMDFQTETDDEFEEFDFDGREHELPSNTLTQINMDVIDSIREHDPI 105

[Close]

BLAST of Tan0001107 vs. ExPASy TrEMBL
Match: A0A5D3C2N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001070 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.3e-14
Identity = 49/111 (44.14%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 9   MSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQI-VGTPCDDEDM 68
           M IP++VHLY+NV R+ +++    E P   ++       +Q + PD +I V +  DDE++
Sbjct: 1   MLIPNMVHLYVNVSRVGLDINLNSE-PFGQLE-----NRTQVIVPDSEIVVSSVYDDEEI 60

Query: 69  VTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           VTNN Y  F TETDDEFEE DF+   H++PSNT  ++D +V+D+  EH+PI
Sbjct: 61  VTNNEYMDFRTETDDEFEEFDFDGCEHELPSNTLTQIDMDVIDSICEHNPI 105

[Close]

BLAST of Tan0001107 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.3e-14
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGT 60
           MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINL-------NVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPI 151

[Close]

BLAST of Tan0001107 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 0


Query: 1   MNLMFSIAMSIPDLVHLYINVRRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQIVGT 60
           MN MFSIA+  P++VHLY+ V  ++  +         +V+P       + +D +P+    
Sbjct: 43  MNTMFSIALPFPNMVHLYVTVSMVDTAINL-------NVEPRY---VEEYVDVEPESDAP 102

Query: 61  P-CDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHDPI 119
           P C +E+MV  N Y +F TETDDEFEE+DF+   +++PSNTF +LD N +D   EHDPI
Sbjct: 103 PVCHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPI 151

[Close]

BLAST of Tan0001107 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.6e-14
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MNLMFSIAMSIPDLVHLYINV----RRMNVNVQTFEETPIQSVDPSLGVESSQCLDPDPQ 60
           MN MFSIA+S P++VHLY+ V      +N+NV+         V+P          + D  
Sbjct: 43  MNTMFSIALSFPNMVHLYVTVSMVDTAINLNVEPRYVEEYVDVEP----------ESDAP 102

Query: 61  IVGTPCDDEDMVTNNTYKKFITETDDEFEELDFENSVHDIPSNTFNELDNNVLDNTIEHD 119
           +V   C +E+MV  N Y +F TETDDEFEE+DF+   +++PSNTF +LD N +D   EHD
Sbjct: 103 LV---CHEEEMVATNEYTEFRTETDDEFEEMDFDGCEYEVPSNTFTDLDMNAVDVIQEHD 151

The following BLAST results are available for this feature:

BLAST of Tan0001107 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001107 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060519.1	1.0e-14	45.05	uncharacterized protein E6C27_scaffold22G003730 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0040603.1	6.8e-14	44.14	uncharacterized protein E6C27_scaffold262G001800 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0034014.1	8.8e-14	42.02	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
KAA0036768.1	1.2e-13	43.44	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	1.2e-13	42.02	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]

BLAST of Tan0001107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V456	5.0e-15	45.05	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C2N3	3.3e-14	44.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SS31	4.3e-14	42.02	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	5.6e-14	42.02	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T1X8	5.6e-14	43.44	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]

BLAST of Tan0001107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001107.1	Tan0001107.1	mRNA