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Tan0001083 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGTACTGCTCTTTTGCGTTTTTATTTACTTGGAAATCTTTAGTGGTATATACAAGGAAGAATACTGTCGCTCAATTTGTTGTTACTAAGCAACTGAAAGGAGATGGAGAGCTAATTTTATTAGTGGAATGAATTCTGGTTTATTGGAAATTCGAATGGAAACCTCTTGGTTAGCACTTCTAATCGGATTCTTGGTAGTTATATTTCCAGACTAAGCTGGACACTTATCTTTCACCCTATTATGCTGGTGCTGGAGTAGAACAACTAAATCAATGCTCATCATGGTTGTTATATATGTTTTTTTCAATAGAAGAAACAATTTCATTGATAAATAAAATGGAGAAAACTTTGAACACCGAAAGATGAATTACAAGAAAGATTGCCAATGAGAAATGAAAAAAGATAAATTGGAAAGACCAAGAGGTTGTACATCTTTGCACCAAAAAAAAAAAAAAAAATCTTAAACACTTCAAAAAGGTGTTGCAACATAGTTCGATAAGATGTAGAAAAGAGTAGAGTGTCATCCACAAATTGCAAATGGTTTAAACAAAAAGATATTGCACCAATAGGATGAGTGGATATATTACCCAGGCTTCCACTATGAGCCAAAAGACAACTAAGACAATCTGAAACCAAAATAAAAAGGAAAGGAGATAACGGATCACGTGTCGAATGCCACGAGAAGGAATGATTTTTCCAGGAGATCTGCCATTTATAATAATTGAGTAGTTAGCACTAGTAATACAACCTCGAATCCATTTCATCTATAAGCTCCCAAACATTTAGCATTTAACACCGCATCAAGAAAATCTCAATCAACTGTGTCAAAAGCCTTCTCAAGATCCAATTTTAACACTACACCCTTAAGATTTCGAATGGTCCAATCGTCAATCAATTCGTTGGCCATTAAAGAAGCATCAAGAATCTGTCGATTAGCCACAAAAGCAAGATGATTTTCTGCAATAGTTGAAGGTAAAACCGATTTAAAGCGATTGGATAAGACTCACGCAACAATCTTATAAGCTCATGGAATAAGACTGATAGGTCGAAATTCTTTACAAATTTGGAGGCAAGTTTCTTAGGATTTAAGCAGATATAAGTCTCACTCATAGATGCATTGACAATACCGGACGAATAAAGTCATGGATCATGGCCATAATATTTGATTTTATAGTGCCCCAACAAAATTTGAGAAATTAGTTTGTAAAACCATCCGGACCAGGAGATTTACTGGAACCCAAAGAAGAAACAGCTTGAAAACTTCCTCCTCAGTGATCACACCTTCAAGACCATTAGCTCGTTCTAAGGAGATAAGACTCCAATCAATATTAGTTGGCAAAAATCGATAATTATCATCTTTAGTGAATAATTTTGAATAGAAGTCAATAAACGCACGTCTAATGTCATGTGTTGTTACTAGAAAAATTTCAGTAATTGAATTCTTCCTCTTTCGAGCAGCTAGAATTCTATGAAAAAATTTAGTGTTCACATCACCCTCCTTAAGCCATTTCGGTTTGGATCTCTGTCTCCAATAAATGTGATCTTGTGCTATCAAAACCTCAATCTGATCATGAATAACACGAGGGGGTGTTTATGCTTATTATTCTGCCATGCAGTATAGCTTTATAAGGACCTTGACAGTACCATAAATCAGTAAATGACATAAACAGGTAACATGCTTTATCTGTCTCGATATTCAGCATGGATTTATATGAGAAGGAAAATTTTTTAGTTTGAGAAATAGCTTATGGGAAATCATCATGTTCTTTTGCGTATGAATTTTATCATCCTTGTGTAGGGGCTATGCTAATATGGGAGGTCCCGAGGGGATTTGTGTATGAATTTTATGTTTCATGTGACTTAATTTTTTTCTCATTATTTGTGTTTGGAGCTGTGGACTGACTTTCTAGTTTCAAAACTTAATTGATTATTCCTATATTAAAAGGGGAAAAAAACCCTCGATTGGTTTCGAATTACAACCAAATTCTTATTGTTTTATTATCCCCTGTCGTATCATACCACCTTTTTAAATGAATAGTGGCTTCAAACTTGCATATCATAATCACTGCTGTGTCCTTGGAGTTTTCAGAAGACATTTAGTGATGAAATGTTTTAGGTTCTTTTTTTTTTTGAGTACGTTTTAGGTTCTTAATTATTGATTTTTCAATCTTACATTAGATTTAATTATGTTTGCTAGACTAACTTTATAAAGATGTTGAAATTAACAGTTGAGCAGAAATTTTCTTTAATTGGTTGTGGCATATTTTATGTGTAAAGGTACTGGGTTAGGGAAGAACTCTTTTGGCTTGACTTGAATCAACTATCTATGACTAGATGATGCTTACCTCCAATCACCAAGTCAGCTTTCATGCCTTGCTACAGGTAATGCAAATTAAAATTACAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA MTKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEEEDDVNWEEG Homology
BLAST of Tan0001083 vs. NCBI nr
Match: PON62082.1 (TFIIE transcription factor [Parasponia andersonii]) HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. NCBI nr
Match: PON86525.1 (TFIIE transcription factor [Trema orientale]) HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. NCBI nr
Match: KAF4373275.1 (hypothetical protein G4B88_007288 [Cannabis sativa]) HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. NCBI nr
Match: XP_030482672.1 (transcription initiation factor IIE subunit alpha isoform X1 [Cannabis sativa] >KAF4385840.1 hypothetical protein F8388_010396 [Cannabis sativa] >KAF4397381.1 hypothetical protein G4B88_027121 [Cannabis sativa]) HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. NCBI nr
Match: KAF3784390.1 (General transcription factor IIE subunit 1 [Nymphaea thermarum]) HSP 1 Score: 53.5 bits (127), Expect = 6.2e-04 Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A7J6GTY9 (Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_010396 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A2P5CM19 (Transcription initiation factor IIE subunit alpha OS=Parasponia andersonii OX=3476 GN=PanWU01x14_140750 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A7J6FRI8 (Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88_007288 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A2P5EM30 (Transcription initiation factor IIE subunit alpha OS=Trema orientale OX=63057 GN=TorRG33x02_177190 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A5C7IFG4 (Transcription initiation factor IIE subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_008451 PE=3 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04 Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0
BLAST of Tan0001083 vs. TAIR 10
Match: AT1G03280.1 (Transcription factor TFIIE, alpha subunit ) HSP 1 Score: 41.6 bits (96), Expect = 2.3e-04 Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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