Tan0001083 (gene) Snake gourd v1

Overview


Name	Tan0001083
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transcription initiation factor IIE subunit alpha
Location	LG09: 70427713 .. 70430273 (+)
RNA-Seq Expression	Tan0001083
Synteny	Tan0001083

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGTACTGCTCTTTTGCGTTTTTATTTACTTGGAAATCTTTAGTGGTATATACAAGGAAGAATACTGTCGCTCAATTTGTTGTTACTAAGCAACTGAAAGGAGATGGAGAGCTAATTTTATTAGTGGAATGAATTCTGGTTTATTGGAAATTCGAATGGAAACCTCTTGGTTAGCACTTCTAATCGGATTCTTGGTAGTTATATTTCCAGACTAAGCTGGACACTTATCTTTCACCCTATTATGCTGGTGCTGGAGTAGAACAACTAAATCAATGCTCATCATGGTTGTTATATATGTTTTTTTCAATAGAAGAAACAATTTCATTGATAAATAAAATGGAGAAAACTTTGAACACCGAAAGATGAATTACAAGAAAGATTGCCAATGAGAAATGAAAAAAGATAAATTGGAAAGACCAAGAGGTTGTACATCTTTGCACCAAAAAAAAAAAAAAAAATCTTAAACACTTCAAAAAGGTGTTGCAACATAGTTCGATAAGATGTAGAAAAGAGTAGAGTGTCATCCACAAATTGCAAATGGTTTAAACAAAAAGATATTGCACCAATAGGATGAGTGGATATATTACCCAGGCTTCCACTATGAGCCAAAAGACAACTAAGACAATCTGAAACCAAAATAAAAAGGAAAGGAGATAACGGATCACGTGTCGAATGCCACGAGAAGGAATGATTTTTCCAGGAGATCTGCCATTTATAATAATTGAGTAGTTAGCACTAGTAATACAACCTCGAATCCATTTCATCTATAAGCTCCCAAACATTTAGCATTTAACACCGCATCAAGAAAATCTCAATCAACTGTGTCAAAAGCCTTCTCAAGATCCAATTTTAACACTACACCCTTAAGATTTCGAATGGTCCAATCGTCAATCAATTCGTTGGCCATTAAAGAAGCATCAAGAATCTGTCGATTAGCCACAAAAGCAAGATGATTTTCTGCAATAGTTGAAGGTAAAACCGATTTAAAGCGATTGGATAAGACTCACGCAACAATCTTATAAGCTCATGGAATAAGACTGATAGGTCGAAATTCTTTACAAATTTGGAGGCAAGTTTCTTAGGATTTAAGCAGATATAAGTCTCACTCATAGATGCATTGACAATACCGGACGAATAAAGTCATGGATCATGGCCATAATATTTGATTTTATAGTGCCCCAACAAAATTTGAGAAATTAGTTTGTAAAACCATCCGGACCAGGAGATTTACTGGAACCCAAAGAAGAAACAGCTTGAAAACTTCCTCCTCAGTGATCACACCTTCAAGACCATTAGCTCGTTCTAAGGAGATAAGACTCCAATCAATATTAGTTGGCAAAAATCGATAATTATCATCTTTAGTGAATAATTTTGAATAGAAGTCAATAAACGCACGTCTAATGTCATGTGTTGTTACTAGAAAAATTTCAGTAATTGAATTCTTCCTCTTTCGAGCAGCTAGAATTCTATGAAAAAATTTAGTGTTCACATCACCCTCCTTAAGCCATTTCGGTTTGGATCTCTGTCTCCAATAAATGTGATCTTGTGCTATCAAAACCTCAATCTGATCATGAATAACACGAGGGGGTGTTTATGCTTATTATTCTGCCATGCAGTATAGCTTTATAAGGACCTTGACAGTACCATAAATCAGTAAATGACATAAACAGGTAACATGCTTTATCTGTCTCGATATTCAGCATGGATTTATATGAGAAGGAAAATTTTTTAGTTTGAGAAATAGCTTATGGGAAATCATCATGTTCTTTTGCGTATGAATTTTATCATCCTTGTGTAGGGGCTATGCTAATATGGGAGGTCCCGAGGGGATTTGTGTATGAATTTTATGTTTCATGTGACTTAATTTTTTTCTCATTATTTGTGTTTGGAGCTGTGGACTGACTTTCTAGTTTCAAAACTTAATTGATTATTCCTATATTAAAAGGGGAAAAAAACCCTCGATTGGTTTCGAATTACAACCAAATTCTTATTGTTTTATTATCCCCTGTCGTATCATACCACCTTTTTAAATGAATAGTGGCTTCAAACTTGCATATCATAATCACTGCTGTGTCCTTGGAGTTTTCAGAAGACATTTAGTGATGAAATGTTTTAGGTTCTTTTTTTTTTTGAGTACGTTTTAGGTTCTTAATTATTGATTTTTCAATCTTACATTAGATTTAATTATGTTTGCTAGACTAACTTTATAAAGATGTTGAAATTAACAGTTGAGCAGAAATTTTCTTTAATTGGTTGTGGCATATTTTATGTGTAAAGGTACTGGGTTAGGGAAGAACTCTTTTGGCTTGACTTGAATCAACTATCTATGACTAGATGATGCTTACCTCCAATCACCAAGTCAGCTTTCATGCCTTGCTACAGGTAATGCAAATTAAAATTACAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA

mRNA sequence

ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA

Coding sequence (CDS)

ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA

Protein sequence

MTKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEEEDDVNWEEG

Homology

[Close]

BLAST of Tan0001083 vs. NCBI nr
Match: PON62082.1 (TFIIE transcription factor [Parasponia andersonii])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. NCBI nr
Match: PON86525.1 (TFIIE transcription factor [Trema orientale])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. NCBI nr
Match: KAF4373275.1 (hypothetical protein G4B88_007288 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. NCBI nr
Match: XP_030482672.1 (transcription initiation factor IIE subunit alpha isoform X1 [Cannabis sativa] >KAF4385840.1 hypothetical protein F8388_010396 [Cannabis sativa] >KAF4397381.1 hypothetical protein G4B88_027121 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. NCBI nr
Match: KAF3784390.1 (General transcription factor IIE subunit 1 [Nymphaea thermarum])

HSP 1 Score: 53.5 bits (127), Expect = 6.2e-04
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEE 44
          TKGDNQPK GRS+NRGIAVVVLDALTR    V+    V++E+
Sbjct: 38 TKGDNQPKTGRSDNRGIAVVVLDALTRQAFIVDVRQWVKEED 79

[Close]

BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A7J6GTY9 (Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_010396 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A2P5CM19 (Transcription initiation factor IIE subunit alpha OS=Parasponia andersonii OX=3476 GN=PanWU01x14_140750 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A7J6FRI8 (Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88_007288 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A2P5EM30 (Transcription initiation factor IIE subunit alpha OS=Trema orientale OX=63057 GN=TorRG33x02_177190 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]

BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A5C7IFG4 (Transcription initiation factor IIE subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_008451 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0


Query: 1  MTKGDNQPKNGRSNNRGIAVVVLDALTR 29
          +TKGDNQPK GRS+NRGIAVVVLDALTR
Sbjct: 21 ITKGDNQPKTGRSDNRGIAVVVLDALTR 48

[Close]

BLAST of Tan0001083 vs. TAIR 10
Match: AT1G03280.1 (Transcription factor TFIIE, alpha subunit )

HSP 1 Score: 41.6 bits (96), Expect = 2.3e-04
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TK DNQ K+ RS+NRGIA VVLDAL R
Sbjct: 33 TKSDNQQKSARSDNRGIAAVVLDALAR 59

The following BLAST results are available for this feature:

BLAST of Tan0001083 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001083 vs. NCBI nr


Match Name	E-value	Identity	Description
PON62082.1	2.8e-04	96.30	TFIIE transcription factor [Parasponia andersonii]	[more]
PON86525.1	2.8e-04	96.30	TFIIE transcription factor [Trema orientale]	[more]
KAF4373275.1	2.8e-04	96.30	hypothetical protein G4B88_007288 [Cannabis sativa]	[more]
XP_030482672.1	2.8e-04	96.30	transcription initiation factor IIE subunit alpha isoform X1 [Cannabis sativa] >...	[more]
KAF3784390.1	6.2e-04	66.67	General transcription factor IIE subunit 1 [Nymphaea thermarum]	[more]

BLAST of Tan0001083 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6GTY9	1.4e-04	96.30	Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=...	[more]
A0A2P5CM19	1.4e-04	96.30	Transcription initiation factor IIE subunit alpha OS=Parasponia andersonii OX=34...	[more]
A0A7J6FRI8	1.4e-04	96.30	Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=...	[more]
A0A2P5EM30	1.4e-04	96.30	Transcription initiation factor IIE subunit alpha OS=Trema orientale OX=63057 GN...	[more]
A0A5C7IFG4	3.9e-04	89.29	Transcription initiation factor IIE subunit alpha OS=Acer yangbiense OX=1000413 ...	[more]

BLAST of Tan0001083 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03280.1	2.3e-04	74.07	Transcription factor TFIIE, alpha subunit	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001083.1	Tan0001083.1	mRNA