Tan0001083 (gene) Snake gourd v1

Overview
NameTan0001083
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionTranscription initiation factor IIE subunit alpha
LocationLG09: 70427713 .. 70430273 (+)
RNA-Seq ExpressionTan0001083
SyntenyTan0001083
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGTACTGCTCTTTTGCGTTTTTATTTACTTGGAAATCTTTAGTGGTATATACAAGGAAGAATACTGTCGCTCAATTTGTTGTTACTAAGCAACTGAAAGGAGATGGAGAGCTAATTTTATTAGTGGAATGAATTCTGGTTTATTGGAAATTCGAATGGAAACCTCTTGGTTAGCACTTCTAATCGGATTCTTGGTAGTTATATTTCCAGACTAAGCTGGACACTTATCTTTCACCCTATTATGCTGGTGCTGGAGTAGAACAACTAAATCAATGCTCATCATGGTTGTTATATATGTTTTTTTCAATAGAAGAAACAATTTCATTGATAAATAAAATGGAGAAAACTTTGAACACCGAAAGATGAATTACAAGAAAGATTGCCAATGAGAAATGAAAAAAGATAAATTGGAAAGACCAAGAGGTTGTACATCTTTGCACCAAAAAAAAAAAAAAAAATCTTAAACACTTCAAAAAGGTGTTGCAACATAGTTCGATAAGATGTAGAAAAGAGTAGAGTGTCATCCACAAATTGCAAATGGTTTAAACAAAAAGATATTGCACCAATAGGATGAGTGGATATATTACCCAGGCTTCCACTATGAGCCAAAAGACAACTAAGACAATCTGAAACCAAAATAAAAAGGAAAGGAGATAACGGATCACGTGTCGAATGCCACGAGAAGGAATGATTTTTCCAGGAGATCTGCCATTTATAATAATTGAGTAGTTAGCACTAGTAATACAACCTCGAATCCATTTCATCTATAAGCTCCCAAACATTTAGCATTTAACACCGCATCAAGAAAATCTCAATCAACTGTGTCAAAAGCCTTCTCAAGATCCAATTTTAACACTACACCCTTAAGATTTCGAATGGTCCAATCGTCAATCAATTCGTTGGCCATTAAAGAAGCATCAAGAATCTGTCGATTAGCCACAAAAGCAAGATGATTTTCTGCAATAGTTGAAGGTAAAACCGATTTAAAGCGATTGGATAAGACTCACGCAACAATCTTATAAGCTCATGGAATAAGACTGATAGGTCGAAATTCTTTACAAATTTGGAGGCAAGTTTCTTAGGATTTAAGCAGATATAAGTCTCACTCATAGATGCATTGACAATACCGGACGAATAAAGTCATGGATCATGGCCATAATATTTGATTTTATAGTGCCCCAACAAAATTTGAGAAATTAGTTTGTAAAACCATCCGGACCAGGAGATTTACTGGAACCCAAAGAAGAAACAGCTTGAAAACTTCCTCCTCAGTGATCACACCTTCAAGACCATTAGCTCGTTCTAAGGAGATAAGACTCCAATCAATATTAGTTGGCAAAAATCGATAATTATCATCTTTAGTGAATAATTTTGAATAGAAGTCAATAAACGCACGTCTAATGTCATGTGTTGTTACTAGAAAAATTTCAGTAATTGAATTCTTCCTCTTTCGAGCAGCTAGAATTCTATGAAAAAATTTAGTGTTCACATCACCCTCCTTAAGCCATTTCGGTTTGGATCTCTGTCTCCAATAAATGTGATCTTGTGCTATCAAAACCTCAATCTGATCATGAATAACACGAGGGGGTGTTTATGCTTATTATTCTGCCATGCAGTATAGCTTTATAAGGACCTTGACAGTACCATAAATCAGTAAATGACATAAACAGGTAACATGCTTTATCTGTCTCGATATTCAGCATGGATTTATATGAGAAGGAAAATTTTTTAGTTTGAGAAATAGCTTATGGGAAATCATCATGTTCTTTTGCGTATGAATTTTATCATCCTTGTGTAGGGGCTATGCTAATATGGGAGGTCCCGAGGGGATTTGTGTATGAATTTTATGTTTCATGTGACTTAATTTTTTTCTCATTATTTGTGTTTGGAGCTGTGGACTGACTTTCTAGTTTCAAAACTTAATTGATTATTCCTATATTAAAAGGGGAAAAAAACCCTCGATTGGTTTCGAATTACAACCAAATTCTTATTGTTTTATTATCCCCTGTCGTATCATACCACCTTTTTAAATGAATAGTGGCTTCAAACTTGCATATCATAATCACTGCTGTGTCCTTGGAGTTTTCAGAAGACATTTAGTGATGAAATGTTTTAGGTTCTTTTTTTTTTTGAGTACGTTTTAGGTTCTTAATTATTGATTTTTCAATCTTACATTAGATTTAATTATGTTTGCTAGACTAACTTTATAAAGATGTTGAAATTAACAGTTGAGCAGAAATTTTCTTTAATTGGTTGTGGCATATTTTATGTGTAAAGGTACTGGGTTAGGGAAGAACTCTTTTGGCTTGACTTGAATCAACTATCTATGACTAGATGATGCTTACCTCCAATCACCAAGTCAGCTTTCATGCCTTGCTACAGGTAATGCAAATTAAAATTACAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA

mRNA sequence

ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA

Coding sequence (CDS)

ATGACTAAAGGGGATAACCAGCCCAAGAACGGTCGGAGTAATAATAGGGGAATCGCGGTTGTTGTTCTTGATGCACTCACAAGGGTTGACTTGAACGTTGAAGCAACAGCTTCGGTAGAGGATGAAGAAGAAGATGATGTGAATTGGGAGGAAGGTTGA

Protein sequence

MTKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEEEDDVNWEEG
Homology
[Close]
BLAST of Tan0001083 vs. NCBI nr
Match: PON62082.1 (TFIIE transcription factor [Parasponia andersonii])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. NCBI nr
Match: PON86525.1 (TFIIE transcription factor [Trema orientale])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. NCBI nr
Match: KAF4373275.1 (hypothetical protein G4B88_007288 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. NCBI nr
Match: XP_030482672.1 (transcription initiation factor IIE subunit alpha isoform X1 [Cannabis sativa] >KAF4385840.1 hypothetical protein F8388_010396 [Cannabis sativa] >KAF4397381.1 hypothetical protein G4B88_027121 [Cannabis sativa])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. NCBI nr
Match: KAF3784390.1 (General transcription factor IIE subunit 1 [Nymphaea thermarum])

HSP 1 Score: 53.5 bits (127), Expect = 6.2e-04
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTRVDLNVEATASVEDEE 44
          TKGDNQPK GRS+NRGIAVVVLDALTR    V+    V++E+
Sbjct: 38 TKGDNQPKTGRSDNRGIAVVVLDALTRQAFIVDVRQWVKEED 79

[Close]
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A7J6GTY9 (Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=F8388_010396 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A2P5CM19 (Transcription initiation factor IIE subunit alpha OS=Parasponia andersonii OX=3476 GN=PanWU01x14_140750 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A7J6FRI8 (Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=G4B88_007288 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A2P5EM30 (Transcription initiation factor IIE subunit alpha OS=Trema orientale OX=63057 GN=TorRG33x02_177190 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TKGDNQPKNGRS+NRGIAVVVLDALTR
Sbjct: 23 TKGDNQPKNGRSDNRGIAVVVLDALTR 49

[Close]
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match: A0A5C7IFG4 (Transcription initiation factor IIE subunit alpha OS=Acer yangbiense OX=1000413 GN=EZV62_008451 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.9e-04
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 0 

Query: 1  MTKGDNQPKNGRSNNRGIAVVVLDALTR 29
          +TKGDNQPK GRS+NRGIAVVVLDALTR
Sbjct: 21 ITKGDNQPKTGRSDNRGIAVVVLDALTR 48

[Close]
BLAST of Tan0001083 vs. TAIR 10
Match: AT1G03280.1 (Transcription factor TFIIE, alpha subunit )

HSP 1 Score: 41.6 bits (96), Expect = 2.3e-04
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 0 

Query: 2  TKGDNQPKNGRSNNRGIAVVVLDALTR 29
          TK DNQ K+ RS+NRGIA VVLDAL R
Sbjct: 33 TKSDNQQKSARSDNRGIAAVVLDALAR 59

The following BLAST results are available for this feature:
BLAST of Tan0001083 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0001083 vs. NCBI nr
Match NameE-valueIdentityDescription
PON62082.12.8e-0496.30TFIIE transcription factor [Parasponia andersonii][more]
PON86525.12.8e-0496.30TFIIE transcription factor [Trema orientale][more]
KAF4373275.12.8e-0496.30hypothetical protein G4B88_007288 [Cannabis sativa][more]
XP_030482672.12.8e-0496.30transcription initiation factor IIE subunit alpha isoform X1 [Cannabis sativa] >... [more]
KAF3784390.16.2e-0466.67General transcription factor IIE subunit 1 [Nymphaea thermarum][more]
BLAST of Tan0001083 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6GTY91.4e-0496.30Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=... [more]
A0A2P5CM191.4e-0496.30Transcription initiation factor IIE subunit alpha OS=Parasponia andersonii OX=34... [more]
A0A7J6FRI81.4e-0496.30Transcription initiation factor IIE subunit alpha OS=Cannabis sativa OX=3483 GN=... [more]
A0A2P5EM301.4e-0496.30Transcription initiation factor IIE subunit alpha OS=Trema orientale OX=63057 GN... [more]
A0A5C7IFG43.9e-0489.29Transcription initiation factor IIE subunit alpha OS=Acer yangbiense OX=1000413 ... [more]
BLAST of Tan0001083 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G03280.12.3e-0474.07Transcription factor TFIIE, alpha subunit [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0001083.1Tan0001083.1mRNA