Tan0001054 (gene) Snake gourd v1

Overview


Name	Tan0001054
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein PSY2
Location	LG07: 8719278 .. 8720523 (+)
RNA-Seq Expression	Tan0001054
Synteny	Tan0001054

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTTCCTACAAATTTACCCCTCAATCTCTTAAGAATCAACCAAACCAAAATGTCTCTAAAACTCAAGTCCTTTCTTCTCCTATTTCTCCTTTTGATCTCTGTTGTTTCTTTCTCTTCAGGTAACCTACTTCTTCTTCTCATTTGGTTTCATAAGTTCATTGTCTTGGATAAATGATGCTAATACTTTTCGTTTTCGTATAGGAATGGTCGATCCACTCCGAAATGTTAAGATTGCAGATAAGTCTATCTTCAAGGTATTGATAAGTGTAACACCCTTCTTTGGGATGGATCTCGACTAGGAGAATGTTAGGTTCCGTTTGATAACAATTTAGTTTTTGGTTTTAGTGGTTGAAAATTAAGCTTCTCTTAATTTCTCTACCATGGTTTTCTTCTCTTAGTTTTCAAAATATGACTTGGTTTTTTAAAACATATGAAAAAGAATAGATAACAAAACAAGGGAATCTATGGGTGAAATTATAAACTTAATTTTCAAAAACTAAAAACCAAATAATTATCAAACAGAATCTTAATTAATGAAATTATGAACGAAAGTTTTGAGTTGGTTTGGGAGTATGTAAGAGTCAGTTTCATAATAAATTTTTTTCTACTTTTAAAAACATGCCTATTTACTAACTTCTTTTTAAAGATACTTTCAAAACAATTCTATAATTCAAGCCAATCTTTGAAAACTCAAAAAGGTAATCTTCAAAAATGTTTTTGTTTTTGAAGTTTAACTAAGATTTCAAGAGTGTTCTTACACAATAATACTATATGCATGAAAATTCAATTTTGATAAAGAGAATGTAATATATATGATCTATTTCTTTCAAACTTATCAAAACCATATAGTTTTCATGTAACTAAATGATATGCTTTTTTTTCCTTTTCAAATTTTAAAAAGGTTCGTGACATCCAAATGAATGCAAGAAAGCTTATGGCACTTGACATACAAGACTACGATGACACCAAAGCAAATAACAGGCACGATCCCAAGAAGCCTGGCAATGGAAAGCCTTGACATAGCCTCTCTTTCGCTTATGGGCACAATAATAACAATATAGTTCAACATGTGGGATGGAAAGATTCAAACTTTTTATCTCTTAGTCGAGCGCATATAATTTAATTAATCAAATTATGCTCAAGTTAGCATGGGGATGAATATTTTGGTTGTCTATTGAGAATGTATATTAGCTTTCTAAAATGAGATGTCTCCTTTAGAAATAAAGCCTTAATCTTTGAATACA

mRNA sequence

TTGCTTCCTACAAATTTACCCCTCAATCTCTTAAGAATCAACCAAACCAAAATGTCTCTAAAACTCAAGTCCTTTCTTCTCCTATTTCTCCTTTTGATCTCTGTTGTTTCTTTCTCTTCAGGAATGGTCGATCCACTCCGAAATGTTAAGATTGCAGATAAGTCTATCTTCAAGGTTCGTGACATCCAAATGAATGCAAGAAAGCTTATGGCACTTGACATACAAGACTACGATGACACCAAAGCAAATAACAGGCACGATCCCAAGAAGCCTGGCAATGGAAAGCCTTGACATAGCCTCTCTTTCGCTTATGGGCACAATAATAACAATATAGTTCAACATGTGGGATGGAAAGATTCAAACTTTTTATCTCTTAGTCGAGCGCATATAATTTAATTAATCAAATTATGCTCAAGTTAGCATGGGGATGAATATTTTGGTTGTCTATTGAGAATGTATATTAGCTTTCTAAAATGAGATGTCTCCTTTAGAAATAAAGCCTTAATCTTTGAATACA

Coding sequence (CDS)

ATGTCTCTAAAACTCAAGTCCTTTCTTCTCCTATTTCTCCTTTTGATCTCTGTTGTTTCTTTCTCTTCAGGAATGGTCGATCCACTCCGAAATGTTAAGATTGCAGATAAGTCTATCTTCAAGGTTCGTGACATCCAAATGAATGCAAGAAAGCTTATGGCACTTGACATACAAGACTACGATGACACCAAAGCAAATAACAGGCACGATCCCAAGAAGCCTGGCAATGGAAAGCCTTGA

Protein sequence

MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDYDDTKANNRHDPKKPGNGKP

Homology

[Close]

BLAST of Tan0001054 vs. NCBI nr
Match: XP_022138250.1 (protein PSY2 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 4.5e-22
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRD-IQMNARKLMALDIQD 60
          MSLKLKS LLL L LI V+ FSSGM  PLR+ KIADKSIFKV   IQMNARKLM LDIQD
Sbjct: 1  MSLKLKSLLLLLLFLIFVLPFSSGMDKPLRDTKIADKSIFKVGGIIQMNARKLMTLDIQD 60

Query: 61 YDDTKANNRHDPKKPGNGKP 80
          YD+TKANNRHDPKKPGNGKP
Sbjct: 61 YDETKANNRHDPKKPGNGKP 80

[Close]

BLAST of Tan0001054 vs. NCBI nr
Match: XP_038906524.1 (protein PSY2-like [Benincasa hispida])

HSP 1 Score: 107.5 bits (267), Expect = 5.5e-20
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDY 60
          MSLKLK FLLL LL IS+ S SS MV+PLR++KI +KSI KV  IQMNARKLM LD+QDY
Sbjct: 1  MSLKLKFFLLL-LLSISIPS-SSAMVEPLRDIKITEKSIIKVGSIQMNARKLMTLDVQDY 60

Query: 61 DDTKANNRHDPKKPGNGKP 80
          D+TKANNRHDPKKPGNGKP
Sbjct: 61 DETKANNRHDPKKPGNGKP 77

[Close]

BLAST of Tan0001054 vs. NCBI nr
Match: XP_023550102.1 (protein PSY2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.0 bits (258), Expect = 6.1e-19
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDY 60
          MS  LK FLLL LLL   V FSSGMV+ +R+VK+ADK+I+ V  + MN RKLM LDI+DY
Sbjct: 1  MSPSLKFFLLLLLLLSISVPFSSGMVESVRDVKVADKAIYMVGGVGMNGRKLMRLDIEDY 60

Query: 61 DDTKANNRHDPKKPGNGKP 80
          DDTKANNRHDPKKPGNGKP
Sbjct: 61 DDTKANNRHDPKKPGNGKP 79

[Close]

BLAST of Tan0001054 vs. NCBI nr
Match: KGN49855.1 (hypothetical protein Csa_000412 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 2.3e-18
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGM-VDPLRNVKIADKSIFKVRDIQMNARKLMALDIQD 60
          MSLK+  F LLFLL IS + FSSGM V+PLR+  IA KSIFK+  IQMN RKLM LD+QD
Sbjct: 1  MSLKVLKFFLLFLLSIS-IPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQD 60

Query: 61 YDDTKANNRHDPKKPGNGKP 80
          YD+TKANNRHDPKKPGNGKP
Sbjct: 61 YDETKANNRHDPKKPGNGKP 79

[Close]

BLAST of Tan0001054 vs. NCBI nr
Match: XP_022922224.1 (protein PSY2-like [Cucurbita moschata])

HSP 1 Score: 99.4 bits (246), Expect = 1.5e-17
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDY 60
          MS  LK FLLL LLL   V FSSG+V+  RNVK+ DK I+ V  + MN RKLM LD++DY
Sbjct: 1  MSPSLKFFLLLLLLLSISVPFSSGVVESGRNVKVTDKVIYMVGGVGMNGRKLMRLDVEDY 60

Query: 61 DDTKANNRHDPKKPGNGKP 80
          DDTKANNRHDPKKPGNGKP
Sbjct: 61 DDTKANNRHDPKKPGNGKP 79

[Close]

BLAST of Tan0001054 vs. ExPASy TrEMBL
Match: A0A6J1C8Y2 (protein PSY2 OS=Momordica charantia OX=3673 GN=LOC111009471 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 65/80 (81.25%), Postives = 68/80 (85.00%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRD-IQMNARKLMALDIQD 60
          MSLKLKS LLL L LI V+ FSSGM  PLR+ KIADKSIFKV   IQMNARKLM LDIQD
Sbjct: 1  MSLKLKSLLLLLLFLIFVLPFSSGMDKPLRDTKIADKSIFKVGGIIQMNARKLMTLDIQD 60

Query: 61 YDDTKANNRHDPKKPGNGKP 80
          YD+TKANNRHDPKKPGNGKP
Sbjct: 61 YDETKANNRHDPKKPGNGKP 80

[Close]

BLAST of Tan0001054 vs. ExPASy TrEMBL
Match: A0A0A0KJF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139330 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.1e-18
Identity = 59/80 (73.75%), Postives = 66/80 (82.50%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGM-VDPLRNVKIADKSIFKVRDIQMNARKLMALDIQD 60
          MSLK+  F LLFLL IS + FSSGM V+PLR+  IA KSIFK+  IQMN RKLM LD+QD
Sbjct: 1  MSLKVLKFFLLFLLSIS-IPFSSGMVVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQD 60

Query: 61 YDDTKANNRHDPKKPGNGKP 80
          YD+TKANNRHDPKKPGNGKP
Sbjct: 61 YDETKANNRHDPKKPGNGKP 79

[Close]

BLAST of Tan0001054 vs. ExPASy TrEMBL
Match: A0A6J1E2S8 (protein PSY2-like OS=Cucurbita moschata OX=3662 GN=LOC111430273 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.3e-18
Identity = 54/79 (68.35%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MSLKLKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDY 60
          MS  LK FLLL LLL   V FSSG+V+  RNVK+ DK I+ V  + MN RKLM LD++DY
Sbjct: 1  MSPSLKFFLLLLLLLSISVPFSSGVVESGRNVKVTDKVIYMVGGVGMNGRKLMRLDVEDY 60

Query: 61 DDTKANNRHDPKKPGNGKP 80
          DDTKANNRHDPKKPGNGKP
Sbjct: 61 DDTKANNRHDPKKPGNGKP 79

[Close]

BLAST of Tan0001054 vs. ExPASy TrEMBL
Match: A0A6J1H1E3 (uncharacterized protein LOC111459477 OS=Cucurbita moschata OX=3662 GN=LOC111459477 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.8e-16
Identity = 54/75 (72.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 5  LKSFLLLFLLLISVVSFSSGMVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDYDDTK 64
          +KSFLLL LL+  V  FSSGMVDPL +V+IAD SIFKV   Q+ ARKL ALDI DYDD +
Sbjct: 6  IKSFLLLLLLIFVVELFSSGMVDPLVDVEIADNSIFKVYGFQLKARKL-ALDI-DYDDPR 65

Query: 65 ANNRHDPKKPGNGKP 80
          ANNRHDPK+PGNGKP
Sbjct: 66 ANNRHDPKRPGNGKP 78

[Close]

BLAST of Tan0001054 vs. ExPASy TrEMBL
Match: A0A5D3C6H5 (Putative Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00390 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 25 MVDPLRNVKIADKSIFKVRDIQMNARKLMALDIQDYDDTKANNRHDPKKPGNGKP 80
          +V+ L++  IADKS FK+  +QMN RKLM LD+QDYD+TKANNRHDPKKPGNGKP
Sbjct: 2  VVESLQDGNIADKSAFKIGGVQMNGRKLMTLDVQDYDETKANNRHDPKKPGNGKP 56

The following BLAST results are available for this feature:

BLAST of Tan0001054 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001054 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138250.1	4.5e-22	81.25	protein PSY2 [Momordica charantia]	[more]
XP_038906524.1	5.5e-20	77.22	protein PSY2-like [Benincasa hispida]	[more]
XP_023550102.1	6.1e-19	70.89	protein PSY2-like [Cucurbita pepo subsp. pepo]	[more]
KGN49855.1	2.3e-18	73.75	hypothetical protein Csa_000412 [Cucumis sativus]	[more]
XP_022922224.1	1.5e-17	68.35	protein PSY2-like [Cucurbita moschata]	[more]

BLAST of Tan0001054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8Y2	2.2e-22	81.25	protein PSY2 OS=Momordica charantia OX=3673 GN=LOC111009471 PE=4 SV=1	[more]
A0A0A0KJF2	1.1e-18	73.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139330 PE=4 SV=1	[more]
A0A6J1E2S8	7.3e-18	68.35	protein PSY2-like OS=Cucurbita moschata OX=3662 GN=LOC111430273 PE=4 SV=1	[more]
A0A6J1H1E3	6.8e-16	72.00	uncharacterized protein LOC111459477 OS=Cucurbita moschata OX=3662 GN=LOC1114594...	[more]
A0A5D3C6H5	1.4e-13	70.91	Putative Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase OS=Cu...	[more]

BLAST of Tan0001054 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34467:SF1	TRANSMEMBRANE PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR34467	TRANSMEMBRANE PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001054.1	Tan0001054.1	mRNA