Tan0001051 (gene) Snake gourd v1

Overview


Name	Tan0001051
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases II and V subunit 6B-like
Location	LG01: 2405691 .. 2408939 (+)
RNA-Seq Expression	Tan0001051
Synteny	Tan0001051

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGGGGTTGAGTTTTATCGTTGTCGGTTCATTCAAGTTCTGAAACCAAGGGTTTTAGGCAATAACCAGAGAGGCGACAACCGTTTTTCTATCGATCATCAATGGCGGACGACGATTACAATGACCTTGACATGGGGTTCTTTCTCTATCTATTTGAATATTTTTTTGTCGAATCTTTTTATGTTTCTCTGGTCAATTGGTTAGAAAATTCGTCAAACGAAAAACCCTAATTTCTAAACTAAGTTCGTTCTTTCAAGTTCAACTTGATTCAGTACGGATTTGGAATTGAATTTGTAAGGGAAAACAGTTCGGTATGGTGGATATCATTTAGGTGTTAGGAAGCAGATGCTATCACGCATTAGAATCAAACTTGATTGTTCGAGCGATTCTGCACCAGTCCGATTTTCTGTAGCTTTGAGCTTGAATGAGGAACTTAAAGAGTTGTATTGGCAAGTGCATGATTTTCTGGTCGTCTAACAGCTCACAATACCATATTATAAGGTTTAGGCGTGTGGAATAAACTTAGACAGGGGCTCGTGGAATATTCAATTAGGGTTTTTTTCTGGGTATAAATTATTGACTTCTTTTACACTCGAAAGCATGGCTGCTAGAAAGAAGTTTTTATTCAAAATTTCAACTTTTTTTTTTTTACCTTCATTATTGATACCAAATTAAGTTGTAACATTGCGGATCCTACAGCATAAGCCTCGGGATATGAAAAGATGTTTACGAACTTATGCTTGTTACTCGATGCTTAAATTCATAATCACTATGTTTTAGTGAACAACTTTATGTTTTGGGGGTTTTGCTTATTTGTTGGGAAATACACGTTTTCTTCCTTGGTTAAAAGGAACTCTGGTAACCTAGATCTTTGTAATGGATTACTGTATCTAAGATTTAAACATTGTGGGTTGAAGGATTTTTTTAAAAGCTTTTCTGCTAGTAGTTTATTTAATTAGGATAGGCCTCTTGCTGCATATGTATCATAAGATCTTCAGTAGCAACATCCACTGATTACTGAGTATTATTAGTTCAAAGTGGGCTTCTATTCGTTTTATTCCCTGTTTTTGATGCCCCTTTCCTACTTGCATAAAGGACTCAGCCCTGCTTCTAGTTCTAGAATACAGTTGATTTATCAAATTGCTGTACCAGCTCTATTTTTTGGATTTGATCTTTTAATTTATCCACCGATATACTATGTTTAGTGTTTTGCATCACATTTTCTGAAGTTTGTCCTTAATTGGGTTAATAAGTTTGATTAATTATGCAAAATGTACACAAGAAAAGCCCATAAATGAAGTATAGTTATAAAAATCTATGGATGAGGATGTTTTGAAGTATAATTGAAGTATAATTGGGTTAATAAGTTTGATTAATTATGCAAAATGTACACAAGAAAAGCCCATAAATGAAGTATAGTTATAAAAATCTATGGACGAGGACGTCTTGAAATCCAACTCTTGGGGCTATGCACAATGGTTTTCTATTTGAAGTAAATATACTAATACTCCATTCTTAGCTGTAGCTTGACCACTCTGCTATAATCTTGTTTGGGAAAGGTCTTTATATTTTCATCTAGGATGATTGGAAGGTTCAAATATCTTTCTGCTCTTATATTAATAAGTGGTTTTTGTTTTTGCTGCAGATATGAGGATGAGCCACCAGAACCCGAGATTGAGGTAAGAATTAGTTTGTTCAGTTCTATTTGGAAGAATGTAAATAGCTGTTCTTTTTGAAGTTGATTAATTATAGTGGAACTGTGAATGATGTACAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAACCTGTCGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGGTTCTCTTTTTTGACATCTGTTACATCCAAACTTTTATCTGCATCAAGGTGATAAATGTTATGTTCCTTTTGGGCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGGTTAGATTTTTAAACGTTGAGCTAAAATGTTTGAAAAGCTTTCTTTTGGTTTTGGCATTCCTTAGATGTATTTTAGTCGTGCCACATGTGCATTCCATGGTTAGTACGCCTACTCAGGAAGTAAAAGGATAAATTAAATCATAAAAGATGCTCCTGGGGGTTAAAATGAAGCCTTTCAAACAATAGGGTATGATCGAAAACCAACGTCAAAGTTTAAAGGCAATTTCTATAAAGGTGTTTTCCGTATCAATCAACCCATGCTTACCCAAAGAAATATGTTGGATGCCATTCACGGGTTTCGCTTACTAAGTTTCTAAAAACTGATGTTACTGTTTACAGTTTGTAATATCTCATACTTTTCGGCGGATGATGGTTTATGCTCGTCGATCTTGAGTGCTTCCCATTTTTTTGGTTGGTTTGGTATTATTCTCTGACATCTCATCATATCCTTTGCTGTCTTAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGTTACCTGCCAGATGGAAGGTTAGGCCTCTTAGATCTTATTCTTTCATCTTTTTCATTCGGATTCACCTGCCAGCACAGGGGTGTGCAGAAAACTGAAAACAAGCAGTTCTTTATATATAGCAAATATATGTATTAATTAAGTTTCGGTTTGTTTTTAAAGAAACCTTAATTTTTTCGGTTTTGAAAAAACCAGCCCAGCTTTCTTTCTTAAGCCCCCGGGGCTTGAATTGAATCGACTGTATGAGTTTCAAGCTAATTTTTGAGGGGGGATTTCCTTTTGAGGTTTGGTTTTCCGTTTTTTTGGAGACCAAATGAAATCAAACATTCTACTTCCCTTAGGGATAAGATAAAATGCTAAATAATGGATCTCTCTCTTCATTTTGCGCAGTTATGAAGACTGGGGCGTTGATGAACTTATCGTGGAGGACTCTTGGAAGAGGCAAGTTGGGGGCGCTTGATCGATTCTTAGTTAGTTTGTGTGGCTGTCACCGTATGTGAGATAATAGTTTCAATGCATAGCGATTAGGTGTTGTGAACGACGAGATGCTCTCCATTATTGTTTTGTTGCATAATTATCTATAATATATTGGAAAGGAACCACTATTAGCAAACATTTTTTACTATTATAAAGCATGCCCTCTTTAGGGTGCATGTTACAATA

mRNA sequence

GGCGGGGTTGAGTTTTATCGTTGTCGGTTCATTCAAGTTCTGAAACCAAGGGTTTTAGGCAATAACCAGAGAGGCGACAACCGTTTTTCTATCGATCATCAATGGCGGACGACGATTACAATGACCTTGACATGGGATATGAGGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAACCTGTCGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGTTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTTATCGTGGAGGACTCTTGGAAGAGGCAAGTTGGGGGCGCTTGATCGATTCTTAGTTAGTTTGTGTGGCTGTCACCGTATGTGAGATAATAGTTTCAATGCATAGCGATTAGGTGTTGTGAACGACGAGATGCTCTCCATTATTGTTTTGTTGCATAATTATCTATAATATATTGGAAAGGAACCACTATTAGCAAACATTTTTTACTATTATAAAGCATGCCCTCTTTAGGGTGCATGTTACAATA

Coding sequence (CDS)

ATGGCGGACGACGATTACAATGACCTTGACATGGGATATGAGGATGAGCCACCAGAACCCGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCCTGGTGAACCTGTCGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAAACCTCAAAATTTATGACGAAGTATGAACGTGCTAGAATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATCCGTCGTTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTTGATGAACTTATCGTGGAGGACTCTTGGAAGAGGCAAGTTGGGGGCGCTTGA

Protein sequence

MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Homology

[Close]

BLAST of Tan0001051 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.4e-61
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MADDDYNDL-DMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRK 60
           MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEP+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Tan0001051 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MADDDYNDL-DMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRK 60
           MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Tan0001051 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-28
Identity = 79/131 (60.31%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   DDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKF 63
           DD++D++   EDE  +    E AEEE   N      GE  +A +K         R T+ +
Sbjct: 11  DDFDDVE---EDEGLDD--LENAEEEGQENVEILPSGERPQANQK---------RITTPY 70

Query: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 71  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 127

Query: 124 DWGVDELIVED 135
           DWGVDELI+ D
Sbjct: 131 DWGVDELIISD 127

[Close]

BLAST of Tan0001051 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.1e-28
Identity = 79/131 (60.31%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   DDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKF 63
           DD++D++   EDE  +    E AEEE   N      GE  +A +K         R T+ +
Sbjct: 11  DDFDDVE---EDEGLDD--LENAEEEGQENVEILPSGERPQANQK---------RITTPY 70

Query: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 71  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 127

Query: 124 DWGVDELIVED 135
           DWGVDELI+ D
Sbjct: 131 DWGVDELIISD 127

[Close]

BLAST of Tan0001051 vs. ExPASy Swiss-Prot
Match: P61217 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.9e-28
Identity = 79/131 (60.31%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 4   DDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKF 63
           DD++D++   EDE  +    E AEEE   N      GE  +A +K         R T+ +
Sbjct: 11  DDFDDVE---EDEGLDD--LENAEEEGQENVEILPSGERPQANQK---------RITTPY 70

Query: 64  MTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYE 123
           MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYE
Sbjct: 71  MTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYE 127

Query: 124 DWGVDELIVED 135
           DWGVDELI+ D
Sbjct: 131 DWGVDELIITD 127

[Close]

BLAST of Tan0001051 vs. NCBI nr
Match: XP_022923151.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022984652.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_022984654.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023551729.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG6576740.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014784.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGY+DEPPEPE+EEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. NCBI nr
Match: XP_022141284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia])

HSP 1 Score: 275.8 bits (704), Expect = 2.1e-70
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPE+EEGAEEELDNNNNDDV GEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. NCBI nr
Match: XP_004140788.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN57349.1 hypothetical protein Csa_009934 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 6.2e-70
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPEIEEGAEEEL+NNNNDD+PGEPVEAEEKEDEEP+ R RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELENNNNDDIPGEPVEAEEKEDEEPIVRARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. NCBI nr
Match: XP_022944842.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022968530.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023541080.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG7013212.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-70
Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYND+DMGYEDEPPEPE+EEGAEEELDNNN DDVPGEPVEAE+KEDEEP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. NCBI nr
Match: XP_008439178.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPEIEEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGY+DEPPEPE+EEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. ExPASy TrEMBL
Match: A0A6J1E614 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata OX=3662 GN=LOC111430903 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.2e-71
Identity = 141/143 (98.60%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGY+DEPPEPE+EEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. ExPASy TrEMBL
Match: A0A6J1CI61 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3673 GN=LOC111011721 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.0e-70
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPE+EEGAEEELDNNNNDDV GEPVEAEEKEDEEPVERVRKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. ExPASy TrEMBL
Match: A0A0A0L8L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180370 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.0e-70
Identity = 138/143 (96.50%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYNDLDMGYEDEPPEPEIEEGAEEEL+NNNNDD+PGEPVEAEEKEDEEP+ R RKT
Sbjct: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELENNNNDDIPGEPVEAEEKEDEEPIVRARKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. ExPASy TrEMBL
Match: A0A6J1HXF2 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111467735 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.9e-70
Identity = 138/143 (96.50%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MADDDYNDLDMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKT 60
           MADDDYND+DMGYEDEPPEPE+EEGAEEELDNNN DDVPGEPVEAE+KEDEEP+ERVRKT
Sbjct: 1   MADDDYNDVDMGYEDEPPEPEMEEGAEEELDNNNADDVPGEPVEAEDKEDEEPIERVRKT 60

Query: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120
           SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG
Sbjct: 61  SKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDG 120

Query: 121 SYEDWGVDELIVEDSWKRQVGGA 144
           SYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 SYEDWGVDELIVEDSWKRQVGGA 143

[Close]

BLAST of Tan0001051 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 )

HSP 1 Score: 235.0 bits (598), Expect = 3.9e-62
Identity = 120/143 (83.92%), Postives = 133/143 (93.01%), Query Frame = 0


Query: 1   MADDDYNDL-DMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRK 60
           MAD+DYND+ D+GYEDEP EPEIEEG EE+++   NDDV GEP+EAE+K + EPV+R RK
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
           GS+E+WGVDELIVEDSWKRQVGG
Sbjct: 121 GSFEEWGVDELIVEDSWKRQVGG 143

[Close]

BLAST of Tan0001051 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 )

HSP 1 Score: 226.5 bits (576), Expect = 1.4e-59
Identity = 118/143 (82.52%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MADDDYNDL-DMGYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRK 60
           MADDDYN++ D+GYEDEP EPEIEEG EE+ D   NDDV  +P+E E+K + EPV+R RK
Sbjct: 1   MADDDYNEVDDLGYEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRK 60

Query: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPD 120
           TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD
Sbjct: 61  TSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPD 120

Query: 121 GSYEDWGVDELIVEDSWKRQVGG 143
            SYE+WGVDELIVEDSWKRQVGG
Sbjct: 121 MSYEEWGVDELIVEDSWKRQVGG 143

The following BLAST results are available for this feature:

BLAST of Tan0001051 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ98	5.4e-61	83.92	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=...	[more]
Q9SJ96	1.9e-58	82.52	DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702...	[more]
P61219	6.1e-28	60.31	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10...	[more]
O88828	6.1e-28	60.31	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ...	[more]
P61217	7.9e-28	60.31	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus...	[more]

BLAST of Tan0001051 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923151.1	2.5e-71	98.60	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]
XP_022141284.1	2.1e-70	98.60	DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia]	[more]
XP_004140788.1	6.2e-70	96.50	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis sativus] >KGN57349...	[more]
XP_022944842.1	8.1e-70	96.50	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]
XP_008439178.1	1.1e-69	97.20	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]	[more]

BLAST of Tan0001051 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2R7	1.2e-71	98.60	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]
A0A6J1E614	1.2e-71	98.60	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata ...	[more]
A0A6J1CI61	1.0e-70	98.60	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3...	[more]
A0A0A0L8L8	3.0e-70	96.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180370 PE=3 SV=1	[more]
A0A6J1HXF2	3.9e-70	96.50	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]

BLAST of Tan0001051 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51940.1	3.9e-62	83.92	RNA polymerase Rpb6	[more]
AT2G04630.1	1.4e-59	82.52	RNA polymerase Rpb6	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 58..111 e-value: 4.7E-6 score: 36.1
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 60..111 e-value: 6.0E-16 score: 58.1
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 1..124 e-value: 2.0E-42 score: 142.4
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 62..117 score: 18.504309
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 3..125 e-value: 4.2E-43 score: 148.3
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 1..123 e-value: 1.0E-46 score: 156.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	PANTHER	PTHR10773	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2	coord: 1..121
None	No IPR available	PANTHER	PTHR10773:SF16	DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B	coord: 1..121
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 65..79
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001051.1	Tan0001051.1	mRNA
Tan0001051.2	Tan0001051.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005768	endosome
cellular_component	GO:0016020	membrane
cellular_component	GO:0005736	RNA polymerase I complex
cellular_component	GO:0005665	RNA polymerase II, core complex
cellular_component	GO:0005666	RNA polymerase III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0035091	phosphatidylinositol binding