Tan0001015 (gene) Snake gourd v1

Overview


Name	Tan0001015
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG08: 17243434 .. 17245510 (+)
RNA-Seq Expression	Tan0001015
Synteny	Tan0001015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATACGATTGATGGATCGATCGGGGCCAATGAAAAGGCCAAGGTCTACATCATTGCCAGTTTAACTGAAGTATTGGCAAAGAAACACGAGTTGATGATCACCGCTAAGGAGATCATGGAGTCGTTTCAAGACATGTTTGGACAACAGTCCTTTCAGGTCAGACACGATTCGCTCAAACACGTCTTCAACGTCCGGATGAAAGAAGGGATGTTTGTCCGAGAATACGTTCTAGACATGATGACCTACTTTAATCTAGCGGAGATGAACGGGGCTTCGATCGACGAGTCGAGCCAGGTCAGCTTTATTCTGGAAACTCTTCTGAAGAGTTTCCTTCAGTTTCGTAGCAATGTTGTTATGAACAAAATTAGCTACACTCTGACTACCCTCCTCAATGAGCAACAGAATTTCCAGTCCTTGATGAGGATCAGGACATCGGAAGTTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCTCTGGGACTAAACCTATTGCTCCTTCTCGCCCGAAAGGGAAGAAGAAGATGAAGAAGGGTAAAGTTGACCGAGCTACCGCCCAAAAGGGCAAGAAGGTCAAGGAAGTTGCAGAAAAAGGAAAGTGTTTCCACTGCAATGAGGATGGTTACTGGAAGAGAAATTGTCCCAAGTTCCTTGCCGAGAGGAAGAATCAAGGTAAATGCGATTTACTTATAACTGAAACATGTTTAGTGGAGAGTAGTGACTCTGCCTGGATTTTAGATTCGGGCGCCACTAACCATGTTTGTTTTTCTTTTCAGAGAATTGATTCTTGGTAGCAACTGCGAGAGGGTGAGGTGACTCTACGGGTTGGATCCGGGGAGATAGTCTCTGCTGCAGCAATCGGCAAAATGAAGCTCTATTTTGGCAGGAATTACTTATTGGTTGACAATTTGTACATAGTCCCAGGGTTTACTAGAAACTTTGTTTCTATTTTCTGTCTTATTGAACAATGTATTTCAATTTCCTTTGAATATAATAAAGCGCTTATTTCTTTCAAAGGAAATTTGATTTGTTCAGCTTCACTTGAGTCTAACTTGTATGTTTTGAAATCAAATTCAGTCAAAAGCGTTTTGAACACTGAATTATTTAAAACTGCAGAAACACGAACTAAAAGAGTTAAAGTTTCTCCAAAAGAAAATCTCCATCTTTGGCATCTAAGGTTAGGCCACATTAATCTCAATCGGATTGAGAGACTAGTGAAGAGTGGACTTCTAAGTCAGTTGAAAAAAACTGTGTTACCGTGTGTGAGTCAAGCCTCGAAGGCAAAATGACCAAACGTCTTTTTAGTGGAAAATGATATAGAGCCAAGGAGCCCGTTGAGCTTATACATTCTGACCTCTGTGGTCCGATGAGTGTTAAAGCACGAGGTGGTTATGAATACTTCGTATCTTTCATTGATGACTATTCGAGGTATGGGTATATTTACCTAATGCATAGGAAGTTTGAAACTCTTGAAAAGTTCAAGGAGTACAAGACTGAGGTTGAGAACTTGTTAGGTAAAACGATAAAAACACTTCGATCGGATCGAGGTGGAGAGTATATGGACACAGAATTCTAGGACTATATGATAGAACACGGAATTACGTTCCAACTCTCAGCACCTGGTATGCCAAAGCAGAATGGTGTATCGGAGTGGAGAAATAGCACCCTGTTGGACATGGTTCGGTCGATGATGAGCTATGCTCGTCTCCCTGATTCTTTTTGGGGTTACGCAGTGGAGACTGCAGTTTATATTTTGAACAACGTTCCATCTAAGAGTTTTTGTGAAACACATTTCGAACTCTGGACTGGACGTAAAGGCAGTTTATACCATTTTAGAATTTGGGGATGCCGACCCATGTGTTGGTGTCAAACTCGAAGAAATTGGAACCCCGTTCAAAATTGTGCCTATTCGTAGGTTATCCAAAAGAGACTAGGGGTGGTCTATTTTACGATCCTAAGGAAAATAGGGTGCTTGTATCGACAAACGCCACTTTTCTTGAGAAAGACCACATCAGGGATCATTTGCCTAGGAGCAAAATCGTGTTGAACGAAATGGACAGTACGTAA

mRNA sequence

ATGCATACGATTGATGGATCGATCGGGGCCAATGAAAAGGCCAAGGTCTACATCATTGCCAGTTTAACTGAAGTATTGGCAAAGAAACACGAGTTGATGATCACCGCTAAGGAGATCATGGAGTCGTTTCAAGACATGTTTGGACAACAGTCCTTTCAGGTCAGACACGATTCGCTCAAACACGTCTTCAACGTCCGGATGAAAGAAGGGATGTTTGTCCGAGAATACGTTCTAGACATGATGACCTACTTTAATCTAGCGGAGATGAACGGGGCTTCGATCGACGAGTCGAGCCAGGTCAGCTTTATTCTGGAAACTCTTCTGAAGAGTTTCCTTCAGTTTCGTAGCAATGTTGTTATGAACAAAATTAGCTACACTCTGACTACCCTCCTCAATGAGCAACAGAATTTCCAGTCCTTGATGAGGATCAGGACATCGGAAGTTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCTCTGGGACTAAACCTATTGCTCCTTCTCGCCCGAAAGGGAAGAAGAAGATGAAGAAGGGTAAAGTTGACCGAGCTACCGCCCAAAAGGGCAAGAAGGTCAAGGAAGTTGCAGAAAAAGGAAAGTGTTTCCACTGCAATGAGGATGGTTACTGGAAGAGAAATTGTCCCAAGTTCCTTGCCGAGAGGAAGAATCAAGGTTATCCAAAAGAGACTAGGGGTGGTCTATTTTACGATCCTAAGGAAAATAGGGTGCTTGTATCGACAAACGCCACTTTTCTTGAGAAAGACCACATCAGGGATCATTTGCCTAGGAGCAAAATCGTGTTGAACGAAATGGACAGTACGTAA

Coding sequence (CDS)

ATGCATACGATTGATGGATCGATCGGGGCCAATGAAAAGGCCAAGGTCTACATCATTGCCAGTTTAACTGAAGTATTGGCAAAGAAACACGAGTTGATGATCACCGCTAAGGAGATCATGGAGTCGTTTCAAGACATGTTTGGACAACAGTCCTTTCAGGTCAGACACGATTCGCTCAAACACGTCTTCAACGTCCGGATGAAAGAAGGGATGTTTGTCCGAGAATACGTTCTAGACATGATGACCTACTTTAATCTAGCGGAGATGAACGGGGCTTCGATCGACGAGTCGAGCCAGGTCAGCTTTATTCTGGAAACTCTTCTGAAGAGTTTCCTTCAGTTTCGTAGCAATGTTGTTATGAACAAAATTAGCTACACTCTGACTACCCTCCTCAATGAGCAACAGAATTTCCAGTCCTTGATGAGGATCAGGACATCGGAAGTTGAGGCAAATGTTGCCTACAGGTCTTATCACAGGGGTTCGACCTCTGGGACTAAACCTATTGCTCCTTCTCGCCCGAAAGGGAAGAAGAAGATGAAGAAGGGTAAAGTTGACCGAGCTACCGCCCAAAAGGGCAAGAAGGTCAAGGAAGTTGCAGAAAAAGGAAAGTGTTTCCACTGCAATGAGGATGGTTACTGGAAGAGAAATTGTCCCAAGTTCCTTGCCGAGAGGAAGAATCAAGGTTATCCAAAAGAGACTAGGGGTGGTCTATTTTACGATCCTAAGGAAAATAGGGTGCTTGTATCGACAAACGCCACTTTTCTTGAGAAAGACCACATCAGGGATCATTTGCCTAGGAGCAAAATCGTGTTGAACGAAATGGACAGTACGTAA

Protein sequence

MHTIDGSIGANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKEGMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTTLLNEQQNFQSLMRIRTSEVEANVAYRSYHRGSTSGTKPIAPSRPKGKKKMKKGKVDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERKNQGYPKETRGGLFYDPKENRVLVSTNATFLEKDHIRDHLPRSKIVLNEMDST

Homology

[Close]

BLAST of Tan0001015 vs. NCBI nr
Match: KAA0066490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.5 bits (711), Expect = 6.3e-71
Identity = 179/423 (42.32%), Postives = 221/423 (52.25%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL+EVLAKKHE ++TA+EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSEVLAKKHESVLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+MM +F++AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMMVHFHMAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERKNQ---------------- 249
            + A A+  KK K  A KG CFHCN++G+WKRNCPK+LAE+K                  
Sbjct: 245 ANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQALEKFKEYKAEVEN 304

Query: 250 ------------------------------------------------------------ 275
                                                                       
Sbjct: 305 ALSKTIKTFRSDRAGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLWDMVRS 364

[Close]

BLAST of Tan0001015 vs. NCBI nr
Match: KAA0050670.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 1.8e-70
Identity = 173/394 (43.91%), Postives = 215/394 (54.57%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+AS +EVLAKKHE M+T +EIM+S Q+MFGQ S+Q++HD+L +++N RM E
Sbjct: 65  ANEKARAYILASFSEVLAKKHESMLTGREIMDSLQEMFGQASYQIKHDALNYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+MM +FN+AEMNGA IDE+SQVSFILE+LL+SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLLESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRG T GTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGLTFGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERK------------------ 249
            +   A+  KK K  A KG CFHCN++G+WKRNCPK+LAE+K                  
Sbjct: 245 ANLVAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKMTKIPFTGKGRR 304

Query: 250 ------------------------------------------------------------ 275
                                                                       
Sbjct: 305 VKEPLELVHSDLCGPMNVKAKGGFEYFITFTDDYSRYGKTIKTFRSDRGEEYMDLKFENY 364

[Close]

BLAST of Tan0001015 vs. NCBI nr
Match: KAA0032020.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 276.2 bits (705), Expect = 3.1e-70
Identity = 178/418 (42.58%), Postives = 219/418 (52.39%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL++VLAKKHELM+TA EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSKVLAKKHELMLTAHEIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+M+ +FN+AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMIVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGSKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERK------------------ 249
            + A A+  KK K  A KG CFHCN++G+WKRNCPK+LAE K                  
Sbjct: 245 ANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAETKKAKQGKMTKRPFTGKGHR 304

Query: 250 ------------------------------------------------------------ 275
                                                                       
Sbjct: 305 AKEPLELVHSDLCGLMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSKALEKFKEYKAEV 364

[Close]

BLAST of Tan0001015 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 275.0 bits (702), Expect = 7.0e-70
Identity = 165/312 (52.88%), Postives = 210/312 (67.31%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL+EVLAKKHE M+TA+EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL++M +FN+AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVK------------------------EVAEKGKCFHCNEDGYWK----- 249
            + A A+  KK K                        ++      +    + +W      
Sbjct: 245 ANLAAAKTTKKAKAAKGISPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQT 304

Query: 250 ----RNC--PKFLAE------RKNQGYPKETRGGLFYDPKENRVLVSTNATFLEKDHIRD 275
                NC   K ++E        ++GYPK TRGG FYDPK+N+V VSTNATFLE+DHIR+
Sbjct: 305 AVYILNCVPSKSVSETPLKLWNGHKGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIRE 364

[Close]

BLAST of Tan0001015 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 1.2e-66
Identity = 145/231 (62.77%), Postives = 181/231 (78.35%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL+EVLAKKHE M+TA+EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+MM +FN+AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERKNQGYPKETR 235
            + A A+  KK K  A KG CFHCN++G+WKRNCPK+LAE+K     K T+
Sbjct: 245 ANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKMTK 293

[Close]

BLAST of Tan0001015 vs. ExPASy TrEMBL
Match: A0A5A7VH46 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00280 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 3.1e-71
Identity = 179/423 (42.32%), Postives = 221/423 (52.25%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL+EVLAKKHE ++TA+EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSEVLAKKHESVLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+MM +F++AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMMVHFHMAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERKNQ---------------- 249
            + A A+  KK K  A KG CFHCN++G+WKRNCPK+LAE+K                  
Sbjct: 245 ANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQALEKFKEYKAEVEN 304

Query: 250 ------------------------------------------------------------ 275
                                                                       
Sbjct: 305 ALSKTIKTFRSDRAGEYMDLKFQNYLMECGIVSQLSAPGTPQQNGVSERRNRTLWDMVRS 364

[Close]

BLAST of Tan0001015 vs. ExPASy TrEMBL
Match: A0A5A7U676 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001530 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 8.9e-71
Identity = 173/394 (43.91%), Postives = 215/394 (54.57%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+AS +EVLAKKHE M+T +EIM+S Q+MFGQ S+Q++HD+L +++N RM E
Sbjct: 65  ANEKARAYILASFSEVLAKKHESMLTGREIMDSLQEMFGQASYQIKHDALNYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+MM +FN+AEMNGA IDE+SQVSFILE+LL+SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLLESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRG T GTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGLTFGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERK------------------ 249
            +   A+  KK K  A KG CFHCN++G+WKRNCPK+LAE+K                  
Sbjct: 245 ANLVAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKMTKIPFTGKGRR 304

Query: 250 ------------------------------------------------------------ 275
                                                                       
Sbjct: 305 VKEPLELVHSDLCGPMNVKAKGGFEYFITFTDDYSRYGKTIKTFRSDRGEEYMDLKFENY 364

[Close]

BLAST of Tan0001015 vs. ExPASy TrEMBL
Match: A0A5A7SMN4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001190 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.5e-70
Identity = 178/418 (42.58%), Postives = 219/418 (52.39%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL++VLAKKHELM+TA EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSKVLAKKHELMLTAHEIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+M+ +FN+AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMIVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGSKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERK------------------ 249
            + A A+  KK K  A KG CFHCN++G+WKRNCPK+LAE K                  
Sbjct: 245 ANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAETKKAKQGKMTKRPFTGKGHR 304

Query: 250 ------------------------------------------------------------ 275
                                                                       
Sbjct: 305 AKEPLELVHSDLCGLMNVKARGGFEYFITFTDDYSRYGYVYLMQHKSKALEKFKEYKAEV 364

[Close]

BLAST of Tan0001015 vs. ExPASy TrEMBL
Match: A0A5A7V6N0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00160 PE=4 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.4e-70
Identity = 165/312 (52.88%), Postives = 210/312 (67.31%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL+EVLAKKHE M+TA+EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL++M +FN+AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVK------------------------EVAEKGKCFHCNEDGYWK----- 249
            + A A+  KK K                        ++      +    + +W      
Sbjct: 245 ANLAAAKTTKKAKAAKGISPGTPQQNGVSERRNRTLLDMVRSMMSYAHLPNSFWGYAVQT 304

Query: 250 ----RNC--PKFLAE------RKNQGYPKETRGGLFYDPKENRVLVSTNATFLEKDHIRD 275
                NC   K ++E        ++GYPK TRGG FYDPK+N+V VSTNATFLE+DHIR+
Sbjct: 305 AVYILNCVPSKSVSETPLKLWNGHKGYPKGTRGGYFYDPKDNKVFVSTNATFLEEDHIRE 364

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BLAST of Tan0001015 vs. ExPASy TrEMBL
Match: A0A5A7U869 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004290 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 6.0e-67
Identity = 145/231 (62.77%), Postives = 181/231 (78.35%), Query Frame = 0


Query: 10  ANEKAKVYIIASLTEVLAKKHELMITAKEIMESFQDMFGQQSFQVRHDSLKHVFNVRMKE 69
           ANEKA+ YI+ASL+EVLAKKHE M+TA+EIM+S Q+MFGQ S+Q++HD+LK+++N RM E
Sbjct: 65  ANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNE 124

Query: 70  GMFVREYVLDMMTYFNLAEMNGASIDESSQVSFILETLLKSFLQFRSNVVMNKISYTLTT 129
           G  VRE+VL+MM +FN+AEMNGA IDE+SQVSFILE+L +SFLQFRSN VMNKI+YTLTT
Sbjct: 125 GASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTT 184

Query: 130 LLNEQQNFQSLMRIRTSEVEANVA--YRSYHRGSTSGTKPIAPSRPKGKKKMKKG----K 189
           LLNE Q F+SLM+I+  + EANVA   R +HRGSTSGTK +  S    K K KKG    K
Sbjct: 185 LLNELQTFESLMKIKGQKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNK 244

Query: 190 VDRATAQKGKKVKEVAEKGKCFHCNEDGYWKRNCPKFLAERKNQGYPKETR 235
            + A A+  KK K  A KG CFHCN++G+WKRNCPK+LAE+K     K T+
Sbjct: 245 ANLAAAKTTKKAK--AAKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKMTK 293

The following BLAST results are available for this feature:

BLAST of Tan0001015 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001015 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066490.1	6.3e-71	42.32	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050670.1	1.8e-70	43.91	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032020.1	3.1e-70	42.58	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	7.0e-70	52.88	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	1.2e-66	62.77	gag/pol protein [Cucumis melo var. makuwa]	[more]

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BLAST of Tan0001015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VH46	3.1e-71	42.32	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G00280...	[more]
A0A5A7U676	8.9e-71	43.91	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G0015...	[more]
A0A5A7SMN4	1.5e-70	42.58	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G0011...	[more]
A0A5A7V6N0	3.4e-70	52.88	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G0016...	[more]
A0A5A7U869	6.0e-67	62.77	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00429...	[more]

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BLAST of Tan0001015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 11..132 e-value: 3.4E-11 score: 43.1
None	No IPR available	GENE3D	4.10.60.10		coord: 174..233 e-value: 4.3E-6 score: 28.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..193
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 9..187
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 9..187
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 203..219 score: 8.647267
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 199..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0001015.1	Tan0001015.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding