Tan0000862 (gene) Snake gourd v1

Overview


Name	Tan0000862
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	high mobility group B protein 3-like
Location	LG05: 6937089 .. 6939227 (-)
RNA-Seq Expression	Tan0000862
Synteny	Tan0000862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTTGCGCGTGTCGCCTAATTCTTGAAAACCACCATGAGAGCTCTGAGAAATGTCGTCGTCACTCACAAGAAGCCTAACGCAGAGTAATCTTCTTCTTCTTCTCACTGATTTCGATCTTCTTGTTTTCGTTTTTATCTTGAATCAGTTTTCACATTCTCTGTTTCTGTTAATTCTCGATGCAAGTTTCTAATCTTCTCCTGTACGATTAGTTCTTTACTTCTGTAATTTATCTTCAATTGCAATGCTATACGCTTTTTCTCTGTACGTTCGTCCGTCCGTTTTTCTTTATACTTTGTTTTTTCTATTATTTTATAATGTTTCGCCTCTTTGTATATTTGTAATTGAGTTGAATTTCACAGCCATGCGTTTGTTTCTTTTTTCTGTTTCATCAGTTTTGTTTTCCTGCGCAAGGTTTATTCACTTCGTTAAATCTCAACTATTGTACTGATATTACTTCTTTATTCTGCTCTCAATCGTTGTTTCCGAATCAAATCAGATAACTATTTTTACTCTTCTATTTTCTGTACGTTTTGGCTGTACCGCTATTTTGAATGTGCTTCTGAAGTTTTTATGCAATTTGCCATCTACTTTTCATGATGTGTGATTTTATCATTGATCCACTTTCCGAAGGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCAAGAAAGGCAACAAAGCCATGAAGAAAGATCAAAATGCTCCTAAACGTCCAGCCACAACCTTCTTCATTTTCATGTAAGTATAATTTATAATTTAACTCTAGTGCTCTATAGAGTCTGCTTCATTTTGAAACCTTCCTTTACTCTCTAGTGTCTAGCTTACATTATATTTATTCGTTCTGATTTTGATTTCTTGTTTTGGCAAATGATAGGGAGGAATTCAGAAAGACGTTTAAGGAGAAGTTTCCTGATGTAAAAGCTGGTTCAGCTGTGAGATTTAATACTTATCTTGTTTCAATCAGCATTCCTTTCTTTTTATTCCTCCACTTCTGTTGAAATACGACCGAGTGGAGGATCAGAAGACTTGTCGAGTTAACCAGATATGTTATTTGTGGTTATCTGTGTTTTGTTATTTTGCAGGTTGGCAAAGCTGGTGGTGAGAAATGGAAATCATTGTCTGATGCTGTAAGATTATGATCTCTTATTTTCATACTATTTCGTAGAAAACTAATTCGAGACTAAACAGTTACTAGTGAATAACCTTAAGAAAAAATGATTAATGAATACGATTGGAGGTTAACTGTTCTATTTTATTTAAAGATCCTTCACGTTTTGCACTTTGTATTCACTTCGCTACTTGATCAGAATTATTAACGATACAAGTTTGTGGTACTTGTTTTTCTTCCTCAGGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGCATACAAGAAGAAACTCGTAACTCTTTTCTATTCTCTCTTTCGTTTTGTTTCGTTTCTTCGGCTCCACTTTGTCTGAACACCATCACCAAGGTTTCATTTATTACCTGTTTGTCCCTTTCTCTCTTTTCTCTAACATCTCCTGGTTTTCAGAATTGTTGTGCTAGCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGAGCAAGAAGCTAGCTCTAGCTCTTAGGTATTGTTTTCCTATCTAAAGATGGCATACCAAAGCATGCATTCTAATTATACAGCACAACCGTGTGCCATATCATTTTCTACTTGTTCTTAACTTCTTGTTGATGTTGATTATCTTACCATTACGAGCAGCTGATCCTGATACTTCGTCTCCCAGATTTGCAGGACTTCAGTGTCCCTTGGACTTGTGGAGGTAACAGAATTTCATATTTTTTTTTAAATAAAAGTTGCATGGTTGTGGACAAGAAGCTAGCAAGTGCAAAGGGAGTCGAGAGGAAGCTAGAACTTGCATAACTCTTTTAACAATGTTAGGACAAAAATTTGGATTTTCCTTGGATACATATGTATATTCTACTTACTTCTCTGCTTTGGTGGTGAACTGGATGTTTCATTTCTCTTGAGATTATTCTCTACTTAACAAGGATTGCATGTTTTGAATTCCGATTAAAATTTCGTATGGAC

mRNA sequence

CCCTTTGCGCGTGTCGCCTAATTCTTGAAAACCACCATGAGAGCTCTGAGAAATGTCGTCGTCACTCACAAGAAGCCTAACGCAGAGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCAAGAAAGGCAACAAAGCCATGAAGAAAGATCAAAATGCTCCTAAACGTCCAGCCACAACCTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTTAAGGAGAAGTTTCCTGATGTAAAAGCTGGTTCAGCTGTTGGCAAAGCTGGTGGTGAGAAATGGAAATCATTGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGCATACAAGAAGAAACTCAATTGTTGTGCTAGCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGAGCAAGAAGCTAGCTCTAGCTCTTAGCTGATCCTGATACTTCGTCTCCCAGATTTGCAGGACTTCAGTGTCCCTTGGACTTGTGGAGGTAACAGAATTTCATATTTTTTTTTAAATAAAAGTTGCATGGTTGTGGACAAGAAGCTAGCAAGTGCAAAGGGAGTCGAGAGGAAGCTAGAACTTGCATAACTCTTTTAACAATGTTAGGACAAAAATTTGGATTTTCCTTGGATACATATGTATATTCTACTTACTTCTCTGCTTTGGTGGTGAACTGGATGTTTCATTTCTCTTGAGATTATTCTCTACTTAACAAGGATTGCATGTTTTGAATTCCGATTAAAATTTCGTATGGAC

Coding sequence (CDS)

ATGAGAGCTCTGAGAAATGTCGTCGTCACTCACAAGAAGCCTAACGCAGAGATGCTGAAGCAGAGAAAAGCTGAGATGAAATCCAAGAAAGGCAACAAAGCCATGAAGAAAGATCAAAATGCTCCTAAACGTCCAGCCACAACCTTCTTCATTTTCATGGAGGAATTCAGAAAGACGTTTAAGGAGAAGTTTCCTGATGTAAAAGCTGGTTCAGCTGTTGGCAAAGCTGGTGGTGAGAAATGGAAATCATTGTCTGATGCTGAAAAAGCTCCTTACGCTGAAAAAGCTTTGAGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGCATACAAGAAGAAACTCAATTGTTGTGCTAGCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGAGCAAGAAGCTAGCTCTAGCTCTTAG

Protein sequence

MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMSTESQKSTSEVHDDAEQEASSSS

Homology

[Close]

BLAST of Tan0000862 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.1e-23
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 27  KSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGSAVGKAGGEKWKSLSD 86
           K  KG K   KD N PKRP++ FF+FME+FR T+KE+ P  K+ +AVGKAGGEKWKSLSD
Sbjct: 20  KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79

Query: 87  AEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMSTESQKSTSEVHDDAEQEAS 146
           +EKAPY  KA +RK EYE  ++AY KKL      E   +   ES KS SEV+D+ + E  
Sbjct: 80  SEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDG 134

Query: 147 S 148
           S
Sbjct: 140 S 134

[Close]

BLAST of Tan0000862 vs. ExPASy Swiss-Prot
Match: O49595 (High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.0e-23
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 9   VTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVK 68
           V  +K         K   +  +  K  KKD N PKR  + FF+F+E+FR TFK++ P+VK
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMST 128
           A SAVGKAGG+KWKS+S AEKAPY EKA +RKAEYE  ++AY K L          E S 
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSD 139

Query: 129 ESQKSTSEVHDDAE 143
           ES+KS SE++D+ E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of Tan0000862 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.4e-21
Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 12  KKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGS 71
           K  +   L  +K    +KK  KA+ KD N PKRP + FF+FME+FRKT+KEK P+ K+ +
Sbjct: 7   KAKSDNKLAVKKQAADTKKTKKAV-KDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVA 66

Query: 72  AVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMSTESQ 131
            VGKAGG+KWK L+ AEKAP+  KA +RK EYE  L+AY KK    A+  AE E   ES 
Sbjct: 67  VVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQ---AAGAAEEE---ESD 126

Query: 132 KSTSEVHDDAEQEASS 148
           KS SEV+DD E +  S
Sbjct: 127 KSRSEVNDDDEDQDGS 135

[Close]

BLAST of Tan0000862 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-21
Identity = 65/129 (50.39%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 19  LKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGSAVGKAGG 78
           L   K   K     KA  KD N PKRPA+ FF+FME+FR+TFK++ P  K+ + VGKA G
Sbjct: 15  LSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAG 74

Query: 79  EKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMSTESQKSTSEVH 138
           +KWKSLSD+EKAPY  KA +RK EYE  ++AY KKL      E   +   ES KS SEV+
Sbjct: 75  DKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKL------EEGPKEDEESDKSVSEVN 134

Query: 139 DDAEQEASS 148
           D+ + E  S
Sbjct: 135 DEDDAEDGS 137

[Close]

BLAST of Tan0000862 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-20
Identity = 63/137 (45.99%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 12  KKPNAEMLKQRKAEMKSKKGNKAMK----KDQNAPKRPATTFFIFMEEFRKTFKEKFPDV 71
           KK   ++   +K    +K G K  K    KD N PKRP + FF+FM +FR+ +K+  P+ 
Sbjct: 11  KKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNN 70

Query: 72  KAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMS 131
           K+ +AVGKA GE+WKSLS+ EKAPY ++AL++K EYEI L+AY KKL      E      
Sbjct: 71  KSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKLEGKDDEEG----- 130

Query: 132 TESQKSTSEVHDDAEQE 145
             S KS SEV+D+ E E
Sbjct: 131 --SDKSKSEVNDEDEDE 140

[Close]

BLAST of Tan0000862 vs. NCBI nr
Match: XP_022947100.1 (high mobility group B protein 3-like [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 6.0e-60
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N VVTHKKPNAEMLK+RKAEMKS K NKAMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KEKFPD KAG AVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKKKLNC A+A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EAEVEMSTESQKSTS+V DD EQEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of Tan0000862 vs. NCBI nr
Match: XP_023533147.1 (high mobility group B protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 241.1 bits (614), Expect = 6.0e-60
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N VVTHKKPN EMLK+RKAEMKS K NKAMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNVEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KEKFPD KAG AVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKKKLNC A+A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EAEVEMSTESQKSTS+V DDAEQEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of Tan0000862 vs. NCBI nr
Match: XP_022971125.1 (high mobility group B protein 3-like [Cucurbita maxima])

HSP 1 Score: 240.0 bits (611), Expect = 1.3e-59
Identity = 131/149 (87.92%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N VVTHKKPNAEMLK+RKAEMKS K NKAMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KEKFPD KAG AVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKKKLNC  +A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EAEVE+STESQKSTS+V DDAEQEASSSS
Sbjct: 121 EAEVELSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of Tan0000862 vs. NCBI nr
Match: KAG7034971.1 (High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-58
Identity = 132/151 (87.42%), Postives = 138/151 (91.39%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N VVTHKKPNAEMLK+RKAEMKS K NKAMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKL--NCCA 120
           KEKFPD KAG AVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKKKL  NC A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLVTNCSA 120

Query: 121 SAEAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           +AEAEVEMSTESQKSTS+V DD EQEASSSS
Sbjct: 121 AAEAEVEMSTESQKSTSDVRDDGEQEASSSS 151

[Close]

BLAST of Tan0000862 vs. NCBI nr
Match: XP_038902242.1 (high mobility group B protein 1-like [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 4.8e-57
Identity = 126/149 (84.56%), Postives = 133/149 (89.26%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRALR+ VV+ KK NA+MLKQRK EMKS K  KA KKDQNAPKRPAT FF+FMEEFRKTF
Sbjct: 1   MRALRSAVVSRKKLNAQMLKQRKTEMKSTKSKKATKKDQNAPKRPATAFFVFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KE+FPD KAG  VGKAGGEKWKS+SD EKAPYAEKALRRKAEYEIALEAYKK LNCCA A
Sbjct: 61  KEEFPDAKAGPVVGKAGGEKWKSMSDTEKAPYAEKALRRKAEYEIALEAYKKNLNCCADA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EAE+EM TESQKSTSEVHDDAEQEASSSS
Sbjct: 121 EAEIEMPTESQKSTSEVHDDAEQEASSSS 149

[Close]

BLAST of Tan0000862 vs. ExPASy TrEMBL
Match: A0A6J1G5W3 (high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC111451070 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.9e-60
Identity = 132/149 (88.59%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N VVTHKKPNAEMLK+RKAEMKS K NKAMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KEKFPD KAG AVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKKKLNC A+A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSAAA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EAEVEMSTESQKSTS+V DD EQEASSSS
Sbjct: 121 EAEVEMSTESQKSTSDVRDDGEQEASSSS 149

[Close]

BLAST of Tan0000862 vs. ExPASy TrEMBL
Match: A0A6J1I4V5 (high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.5e-60
Identity = 131/149 (87.92%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRAL+N VVTHKKPNAEMLK+RKAEMKS K NKAMKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KEKFPD KAG AVGKAGGEKWKS+SDAEKAPYAEK+L RKAEYEIALE YKKKLNC  +A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKLNCSVAA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EAEVE+STESQKSTS+V DDAEQEASSSS
Sbjct: 121 EAEVELSTESQKSTSDVRDDAEQEASSSS 149

[Close]

BLAST of Tan0000862 vs. ExPASy TrEMBL
Match: A0A6J1CIL2 (high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011298 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.4e-56
Identity = 127/149 (85.23%), Postives = 130/149 (87.25%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRA RN V+  KKPNAEMLKQRKAEMKS K NK+MKKDQNAPKRPAT FFIFMEEFRKTF
Sbjct: 1   MRAQRNAVIARKKPNAEMLKQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KEKFPD KAG AVGKAGGEKWKSLSDAEKAPYAEKAL RK EY IALEAYKK LNCCA A
Sbjct: 61  KEKFPDAKAGPAVGKAGGEKWKSLSDAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           EA   M TESQKSTSEVHDD +QEASSSS
Sbjct: 121 EA--AMPTESQKSTSEVHDDVDQEASSSS 147

[Close]

BLAST of Tan0000862 vs. ExPASy TrEMBL
Match: A0A1S3C2L9 (high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.5e-52
Identity = 119/149 (79.87%), Postives = 127/149 (85.23%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRALRN VVTHKKPNA+ LKQRKAEMKS    K+ KKDQNAPKRPAT FF+FMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKS---TKSKKKDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASA 120
           KE+FPD KAG  VGKAGGEKWKS+SDAEKAPYAEKAL+RKAEYEIALEAYK   NC   A
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAEKAPYAEKALKRKAEYEIALEAYKNNFNCYTVA 120

Query: 121 EAEVEMSTESQKSTSEVHDDAEQEASSSS 150
           E E+EM TESQKSTSEV+DD EQEASSSS
Sbjct: 121 EPELEMPTESQKSTSEVNDDTEQEASSSS 146

[Close]

BLAST of Tan0000862 vs. ExPASy TrEMBL
Match: A0A1S3C1W5 (HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 119/157 (75.80%), Postives = 127/157 (80.89%), Query Frame = 0


Query: 1   MRALRNVVVTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTF 60
           MRALRN VVTHKKPNA+ LKQRKAEMKS    K+ KKDQNAPKRPAT FF+FMEEFR  F
Sbjct: 1   MRALRNAVVTHKKPNAQKLKQRKAEMKS---TKSKKKDQNAPKRPATAFFVFMEEFRMMF 60

Query: 61  KEKFPDVKAGSAVGKAGGEKWKSLSDA--------EKAPYAEKALRRKAEYEIALEAYKK 120
           KE+FPD KAG  VGKAGGEKWKS+SDA        EKAPYAEKAL+RKAEYEIALEAYK 
Sbjct: 61  KEQFPDAKAGPVVGKAGGEKWKSMSDAVRLRFLILEKAPYAEKALKRKAEYEIALEAYKN 120

Query: 121 KLNCCASAEAEVEMSTESQKSTSEVHDDAEQEASSSS 150
             NC   AE E+EM TESQKSTSEV+DD EQEASSSS
Sbjct: 121 NFNCYTVAEPELEMPTESQKSTSEVNDDTEQEASSSS 154

[Close]

BLAST of Tan0000862 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-24
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 27  KSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGSAVGKAGGEKWKSLSD 86
           K  KG K   KD N PKRP++ FF+FME+FR T+KE+ P  K+ +AVGKAGGEKWKSLSD
Sbjct: 20  KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79

Query: 87  AEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMSTESQKSTSEVHDDAEQEAS 146
           +EKAPY  KA +RK EYE  ++AY KKL      E   +   ES KS SEV+D+ + E  
Sbjct: 80  SEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDG 134

Query: 147 S 148
           S
Sbjct: 140 S 134

[Close]

BLAST of Tan0000862 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 108.6 bits (270), Expect = 4.4e-24
Identity = 66/121 (54.55%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 27  KSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVKAGSAVGKAGGEKWKSLSD 86
           K  KG K   KD N PKRP++ FF+FME+FR T+KE+ P  K+ +AVGKAGGEKWKSLSD
Sbjct: 20  KPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSD 79

Query: 87  AEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMSTESQKSTSEVHDDAEQEAS 146
           +EKAPY  KA +RK EYE  ++AY KKL      E   +   ES KS SEV+D+ + E  
Sbjct: 80  SEKAPYVAKADKRKVEYEKNMKAYNKKL------EEGPKEDEESDKSVSEVNDEDDAEDG 134

Query: 147 S 148
           S
Sbjct: 140 S 134

[Close]

BLAST of Tan0000862 vs. TAIR 10
Match: AT3G51880.1 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 9   VTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVK 68
           V  +K         K   +  +  K  KKD N PKR  + FF+F+E+FR TFK++ P+VK
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMST 128
           A SAVGKAGG+KWKS+S AEKAPY EKA +RKAEYE  ++AY K L          E S 
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSD 139

Query: 129 ESQKSTSEVHDDAE 143
           ES+KS SE++D+ E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of Tan0000862 vs. TAIR 10
Match: AT3G51880.2 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 9   VTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVK 68
           V  +K         K   +  +  K  KKD N PKR  + FF+F+E+FR TFK++ P+VK
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMST 128
           A SAVGKAGG+KWKS+S AEKAPY EKA +RKAEYE  ++AY K L          E S 
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSD 139

Query: 129 ESQKSTSEVHDDAE 143
           ES+KS SE++D+ E
Sbjct: 140 ESEKSRSEINDEDE 144

[Close]

BLAST of Tan0000862 vs. TAIR 10
Match: AT3G51880.3 (high mobility group B1 )

HSP 1 Score: 108.2 bits (269), Expect = 5.7e-24
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 0


Query: 9   VTHKKPNAEMLKQRKAEMKSKKGNKAMKKDQNAPKRPATTFFIFMEEFRKTFKEKFPDVK 68
           V  +K         K   +  +  K  KKD N PKR  + FF+F+E+FR TFK++ P+VK
Sbjct: 20  VDDRKVGKRKAPAEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVK 79

Query: 69  AGSAVGKAGGEKWKSLSDAEKAPYAEKALRRKAEYEIALEAYKKKLNCCASAEAEVEMST 128
           A SAVGKAGG+KWKS+S AEKAPY EKA +RKAEYE  ++AY K L          E S 
Sbjct: 80  AVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLE---------EGSD 139

Query: 129 ESQKSTSEVHDDAE 143
           ES+KS SE++D+ E
Sbjct: 140 ESEKSRSEINDEDE 144

The following BLAST results are available for this feature:

BLAST of Tan0000862 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93047	6.1e-23	54.55	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49595	8.0e-23	49.25	High mobility group B protein 1 OS=Arabidopsis thaliana OX=3702 GN=HMGB1 PE=1 SV...	[more]
P40619	3.4e-21	51.47	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
O49596	9.8e-21	50.39	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	8.3e-20	45.99	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of Tan0000862 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947100.1	6.0e-60	88.59	high mobility group B protein 3-like [Cucurbita moschata]	[more]
XP_023533147.1	6.0e-60	88.59	high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971125.1	1.3e-59	87.92	high mobility group B protein 3-like [Cucurbita maxima]	[more]
KAG7034971.1	1.9e-58	87.42	High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038902242.1	4.8e-57	84.56	high mobility group B protein 1-like [Benincasa hispida]	[more]

BLAST of Tan0000862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G5W3	2.9e-60	88.59	high mobility group B protein 3-like OS=Cucurbita moschata OX=3662 GN=LOC1114510...	[more]
A0A6J1I4V5	6.5e-60	87.92	high mobility group B protein 3-like OS=Cucurbita maxima OX=3661 GN=LOC111469891...	[more]
A0A6J1CIL2	7.4e-56	85.23	high mobility group B protein 3-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A1S3C2L9	8.5e-52	79.87	high mobility group B protein 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C1W5	1.4e-49	75.80	HMG1/2-like protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495957 PE=3 SV=1	[more]

BLAST of Tan0000862 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	4.4e-24	54.55	high mobility group B3	[more]
AT1G20696.3	4.4e-24	54.55	high mobility group B3	[more]
AT3G51880.1	5.7e-24	49.25	high mobility group B1	[more]
AT3G51880.2	5.7e-24	49.25	high mobility group B1	[more]
AT3G51880.3	5.7e-24	49.25	high mobility group B1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..42
None	No IPR available	PANTHER	PTHR46261:SF10	HIGH MOBILITY GROUP B PROTEIN 3-LIKE	coord: 1..147
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 42..108 e-value: 4.85687E-14 score: 61.1045
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 41..112 e-value: 1.1E-22 score: 91.3
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 42..111 e-value: 2.7E-20 score: 72.5
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 42..111 score: 18.157223
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 37..144 e-value: 1.3E-23 score: 85.4
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 33..114
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0000862.1	Tan0000862.1	mRNA
Tan0000862.2	Tan0000862.2	mRNA
Tan0000862.3	Tan0000862.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0030527	structural constituent of chromatin