Tan0000861 (gene) Snake gourd v1

Overview
NameTan0000861
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 22664335 .. 22664670 (-)
RNA-Seq ExpressionTan0000861
SyntenyTan0000861
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAAATGGAGGGGAGATTGGCGAAAGTTAGGTGGAGAGAGGCACAAATTGGGGCTATTACTCGTTTGAACCAAGTAATTAGTACCTTGACAGATCAGATGGATCAAATTGAAGTAGCTTTAGGAAATCCTCCAGGTAGGGAAGTTAATGACGGGGTTGAAAATGAAGAAGAAGATGACAATGTAACCCTTTTAGCCGGGCACAATCCAAGGAGAGGGAGGGGTGTAGGTCGGGGAAGAAGAAGGGGAAGAAGAGCAGGAAGAGAATTGTTACCACCGAGAAGGGTTGAGAGGGAGTACCAATATGAGAGGAGCAGGGGGTGTGAAACTTAA

mRNA sequence

ATGGGGGAAATGGAGGGGAGATTGGCGAAAGTTAGGTGGAGAGAGGCACAAATTGGGGCTATTACTCGTTTGAACCAAGTAATTAGTACCTTGACAGATCAGATGGATCAAATTGAAGTAGCTTTAGGAAATCCTCCAGGTAGGGAAGTTAATGACGGGGTTGAAAATGAAGAAGAAGATGACAATGTAACCCTTTTAGCCGGGCACAATCCAAGGAGAGGGAGGGGTGTAGGTCGGGGAAGAAGAAGGGGAAGAAGAGCAGGAAGAGAATTGTTACCACCGAGAAGGGTTGAGAGGGAGTACCAATATGAGAGGAGCAGGGGGTGTGAAACTTAA

Coding sequence (CDS)

ATGGGGGAAATGGAGGGGAGATTGGCGAAAGTTAGGTGGAGAGAGGCACAAATTGGGGCTATTACTCGTTTGAACCAAGTAATTAGTACCTTGACAGATCAGATGGATCAAATTGAAGTAGCTTTAGGAAATCCTCCAGGTAGGGAAGTTAATGACGGGGTTGAAAATGAAGAAGAAGATGACAATGTAACCCTTTTAGCCGGGCACAATCCAAGGAGAGGGAGGGGTGTAGGTCGGGGAAGAAGAAGGGGAAGAAGAGCAGGAAGAGAATTGTTACCACCGAGAAGGGTTGAGAGGGAGTACCAATATGAGAGGAGCAGGGGGTGTGAAACTTAA

Protein sequence

MGEMEGRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGNPPGREVNDGVENEEEDDNVTLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREYQYERSRGCET
Homology
BLAST of Tan0000861 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 75/102 (73.53%), Postives = 87/102 (85.29%), Query Frame = 0

Query: 6   GRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGNPPGREV--NDGVENEEEDDNV 65
           G + + RWREAQ+G ITRLNQVISTLTD+M++IE+ALGN  GREV  N+GVEN EEDDNV
Sbjct: 9   GEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLNEGVEN-EEDDNV 68

Query: 66  TLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREYQYER 106
           TLLAGH+PR GR VGRGR R RR GRE+L P+R+EREYQYER
Sbjct: 69  TLLAGHSPRGGRDVGRGRGRVRRRGREILAPKRIEREYQYER 109

BLAST of Tan0000861 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-20
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 6   GRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGNPPGREV--NDGVENEEEDDNV 65
           G + + RWREAQ+G ITRLNQVISTLTD+M++I++ALGN  GREV  N+GVEN EEDDNV
Sbjct: 9   GEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVEN-EEDDNV 68

Query: 66  TLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREY 102
           TLLAGH+PR GR VGRGR R RR    L    ++E  +
Sbjct: 69  TLLAGHSPRGGRDVGRGRGRVRRREEYLQYESKIEHVF 105

BLAST of Tan0000861 vs. NCBI nr
Match: KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 2.5e-18
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 0

Query: 6   GRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGN-PPGREVNDGVENEEEDDNVT 65
           G +++ R  EAQ GAI RL QVI+ LTD++D+IEVAL N   G+ +N+GVENEE++DN T
Sbjct: 9   GEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLNEGVENEEDEDNET 68

Query: 66  LLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREYQYER 106
           LLA  N R  R +G+GRRR RR GR++LP RRVEREYQ ER
Sbjct: 69  LLAIQNLRGRRVLGQGRRRERREGRDMLPERRVEREYQNER 109

BLAST of Tan0000861 vs. NCBI nr
Match: XP_022929948.1 (uncharacterized protein LOC111436410 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-16
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 10 KVRWREAQIGAITRLNQVISTLTDQMDQIEVALGNPPGREV--NDGVENEEEDDNVTLLA 69
          + RWREAQ+G IT LNQVISTLTD+M++IE+ALGN  GREV  N+GVEN EEDDNVTLLA
Sbjct: 13 EARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVEN-EEDDNVTLLA 72

Query: 70 GHNPRRGR 76
          GH+PR GR
Sbjct: 73 GHSPRGGR 79

BLAST of Tan0000861 vs. NCBI nr
Match: KGN47250.1 (hypothetical protein Csa_016986 [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 0

Query: 5   EGRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGN-PPGREVNDGVENEEEDDNV 64
           +G++++ +  EAQ GAI RL QVI+ LT+++D++EVAL N   G  +N+GVENEE++DN 
Sbjct: 8   DGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVENEEDEDNE 67

Query: 65  TLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREYQYER 106
           T LAG NPR  R +G+GRRR RR  R +LP RRVE E+Q ER
Sbjct: 68  TFLAGQNPRGRRVLGQGRRRERRDVRGMLPERRVEVEHQNER 109

BLAST of Tan0000861 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.3e-20
Identity = 62/98 (63.27%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 6   GRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGNPPGREV--NDGVENEEEDDNV 65
           G + + RWREAQ+G ITRLNQVISTLTD+M++I++ALGN  GREV  N+GVEN EEDDNV
Sbjct: 9   GEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLNEGVEN-EEDDNV 68

Query: 66  TLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREY 102
           TLLAGH+PR GR VGRGR R RR    L    ++E  +
Sbjct: 69  TLLAGHSPRGGRDVGRGRGRVRRREEYLQYESKIEHVF 105

BLAST of Tan0000861 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-17
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 0

Query: 10 KVRWREAQIGAITRLNQVISTLTDQMDQIEVALGNPPGREV--NDGVENEEEDDNVTLLA 69
          + RWREAQ+G IT LNQVISTLTD+M++IE+ALGN  GREV  N+GVEN EEDDNVTLLA
Sbjct: 13 EARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLNEGVEN-EEDDNVTLLA 72

Query: 70 GHNPRRGR 76
          GH+PR GR
Sbjct: 73 GHSPRGGR 79

BLAST of Tan0000861 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 56/102 (54.90%), Postives = 76/102 (74.51%), Query Frame = 0

Query: 5   EGRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGN-PPGREVNDGVENEEEDDNV 64
           +G++++ +  EAQ GAI RL QVI+ LT+++D++EVAL N   G  +N+GVENEE++DN 
Sbjct: 8   DGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLNEGVENEEDEDNE 67

Query: 65  TLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRRVEREYQYER 106
           T LAG NPR  R +G+GRRR RR  R +LP RRVE E+Q ER
Sbjct: 68  TFLAGQNPRGRRVLGQGRRRERRDVRGMLPERRVEVEHQNER 109

BLAST of Tan0000861 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.3e-08
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 5  EGRLAKVRWREAQIGAITRLNQVISTLTDQMDQIEVALGN-PPGREVNDGVENEEEDDNV 64
          +G +++ R  EAQ GAI RL QVI+ LTD++D++ VAL N   G  +N+GVENE+++DN 
Sbjct: 8  DGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLNEGVENEKDEDNE 67

Query: 65 TLLAGHNPRRGR 76
          TLLA  NP   R
Sbjct: 68 TLLARQNPTERR 79

BLAST of Tan0000861 vs. ExPASy TrEMBL
Match: A0A5A7UDQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27G00150 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 0

Query: 38  IEVALGN-PPGREVNDGVENEEEDDNVTLLAGHNPRRGRGVGRGRRRGRRAGRELLPPRR 97
           ++VAL N   G  +N+GVEN+E++DN T+L G NP+  R +G+ RRR RR G  +LP RR
Sbjct: 1   MKVALRNHHQGEVLNEGVENKEDEDNETILVGQNPKGRRVLGQDRRRERREGMGMLPERR 60

Query: 98  VEREYQYERSRG 109
           VEREY+ ER  G
Sbjct: 61  VEREYENERREG 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023534142.11.8e-2973.53uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo][more]
XP_022925325.12.7e-2063.27uncharacterized protein LOC111432615 [Cucurbita moschata][more]
KAE8646857.12.5e-1860.40hypothetical protein Csa_020829, partial [Cucumis sativus][more]
XP_022929948.11.8e-1675.00uncharacterized protein LOC111436410 [Cucurbita moschata][more]
KGN47250.14.0e-1654.90hypothetical protein Csa_016986 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
A0A6J1EHL91.3e-2063.27uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A6J1ETN18.7e-1775.00uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A0A0KC001.9e-1654.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1[more]
A0A0A0L0S37.3e-0851.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1[more]
A0A5A7UDQ91.3e-0752.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 21..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0000861.1Tan0000861.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding